Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Forward (+)

133829 .. 141176

Gene Structure 7348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGATTGATCAATTCATAAATTTTGTGATTCGCCCTCCCAGGGCAGACTATAACCCAGATCAGTATCTATGGGAAAGGGATTTCACTCTTGCAGGCAGAGCATACAGACGACAAGACTTGGAGCTTAGGAATGCCAGAGGCCATACCTTGCAGTGTAGTCATTATCTTCCTTCACCGTTCCCAGACGATTCTTCTCTACCTTGTGTTGTATACTGCCATGGAAACAGTGGATGTAGGGCAGATGCAAATGAAGCCGCTGTAATTCTTCTTCCATCAAATATCACTGTTTTCACTCTTGATTTTTCGGGTTCAGGCTTATCTGATGGTGACTATGTCAGCCTTGGTTGGCATGAGAGAGATGACCTCAAGATCGTGGTTTCATATCTAAGAAGCAACAAACAAATCTCGCGTATAGGTCTATGGGGGCGATCTATGGGAGCAGTCACTTGCCTTCTTTATGGAGCAGAAGACCCTTCCATTGCTGGAATGGTGTTGGATAGTGCCTTTTCAAACTTGTATGTTCTAATGATGGAGCTAGTGGATGTGTACAAGATCCGGCTTCCTAAATTCACTGTTAAGATGGCAGTACAATACATGCGCCGGATAATTGAGAAGAAGGCAAAGTTTGATATCATGGATCTTAATTGCTTACAGGTTGCATCCAAAACATTCATTCCTGCTTTATTTGGACATGCCAAGGACGACAAGTTCATCCAAACCAGCCATTCTGATCTCATCTACAAGTCCTATGCAGGGGACAAAAATATTATATTTTTTGATGGTGATCACAATTCCTCTCGGCCACAGTTTTATTATGATTCAGTTTCAATTTTCTTTTACAATGTTCTTCATCCCCCGCAAATATCTTCTTCTCATTCATGTAAGCCTGAGAAATATTATGATCTAGAGGATTTGAAGGTTGGCCCTGGTTTGGATGAGGGCCTATTACATAAGATAATCAGTGGTGTTCATTCTGCTGGTACTGATGCTGCAAGTTCTTCTTATGCTCCTGCAGCCCTTGCAACCGAAAAATCTGTGGGAGACCTTCTCTCTGAAATCGCACCAATGGCTACTATAGTTGACTCTGCGCATGATGAAGATGGCACACTTAATTGTCACTATACATCAAATCTACAGGATCGGCCAAATGGTCAGAATGAAGAATGCTGTTCATATACAAGCTCAAATAGAGAGAGTTGGGGAAGATGCTCTTCACTAGAAGGCAGTGATGAAGAATCTTCTGATTGCACAGCTGTTGACAATAGTCATCAGAAGGTGTATGCAGCATCCCTTCAATGTGAGCAACAAAAATCACCGGACCCGAAGAAAGAGGTGAAGAAAAAGAAGAAAGTTCCAATTGCTCCCAAGAAGCCCAAAAGTGAGAAATTTGAAAAGTTAGAGGCCCTTGGCAAAAGATTGCGTCTCTGCATCCTGAAGCGAGTAAACCATAGGAGGCCCCACACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

489

Amino Acids

54.74

Weight (kDa)

6.6

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	67 - 172	5.2e-07	alpha/beta hydrolase fold
Hydrolase_4	PF12146	68 - 175	1.2e-09	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1089
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	255, 857
AclWI	GGATC	3 cut(s)	547, 645, 1146
AcoI	YGGCCR	2 cut(s)	800, 1142
AcsI	RAATTY	3 cut(s)	19, 566, 1385
AcuI	CTGAAG	1 cut(s)	1454
AcvI	CACGTG	1 cut(s)	1464
AfaI	GTAC	3 cut(s)	548, 588, 982
AfiI	CCNNNNNNNGG	3 cut(s)	40, 753, 931
AflIII	ACRYGT	1 cut(s)	1461
AgsI	TTSAA	5 cut(s)	510, 828, 916, 1295, 1391
AjnI	CCWGG	2 cut(s)	38, 925
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	4 cut(s)	124, 535, 1182, 1253
AluI	AGCT	4 cut(s)	124, 535, 1182, 1253
Alw26I	GTCTC	2 cut(s)	1035, 1427
AlwI	GGATC	3 cut(s)	547, 645, 1146
AoxI	GGCC	7 cut(s)	139, 800, 922, 940, 1142, 1401, 1454
ApeKI	GCWGC	3 cut(s)	989, 1013, 1283
ApoI	RAATTY	3 cut(s)	19, 566, 1385
AspLEI	GCGC	2 cut(s)	600, 1090
AspS9I	GGNCC	5 cut(s)	923, 940, 1318, 1402, 1455
AsuHPI	GGTGA	5 cut(s)	165, 338, 794, 1305, 1345
AvaII	GGWCC	1 cut(s)	1318
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbrPI	CACGTG	1 cut(s)	1464
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	976, 1025, 1295
BccI	CCATC	6 cut(s)	280, 317, 523, 574, 773, 1094
BciT130I	CCWGG	2 cut(s)	40, 927
BclI	TGATCA	2 cut(s)	7, 784
BcoDI	GTCTC	2 cut(s)	1035, 1427
BfaI	CTAG	3 cut(s)	536, 905, 1217
BfmI	CTRYAG	3 cut(s)	1011, 1074, 1133
BisI	GCNGC	4 cut(s)	255, 990, 1014, 1284
BlsI	GCNGC	4 cut(s)	256, 991, 1015, 1285
Bme1390I	CCNGG	2 cut(s)	40, 927
Bme18I	GGWCC	1 cut(s)	1318
BmgT120I	GGNCC	5 cut(s)	923, 940, 1318, 1402, 1455
BmiI	GGNNCC	2 cut(s)	1320, 1457
BmrFI	CCNGG	2 cut(s)	40, 927
BmsI	GCATC	6 cut(s)	232, 668, 976, 1196, 1295, 1437
BoxI	GACNNNNGTC	1 cut(s)	1263
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	4 cut(s)	348, 380, 1032, 1064
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	350
BsaAI	YACGTR	1 cut(s)	1464
BsaBI	GATNNNNATC	2 cut(s)	63, 783
BsaI	GGTCTC	1 cut(s)	1035
BsaJI	CCNNGG	7 cut(s)	38, 39, 217, 340, 696, 925, 1405
BsaWI	WCCGGW	1 cut(s)	1315
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 753, 931
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	2 cut(s)	63, 783
BseBI	CCWGG	2 cut(s)	40, 927
BseDI	CCNNGG	7 cut(s)	38, 39, 217, 340, 696, 925, 1405
BseGI	GGATG	8 cut(s)	236, 547, 659, 711, 850, 940, 1286, 1428
BseJI	GATNNNNATC	2 cut(s)	63, 783
BseLI	CCNNNNNNNGG	3 cut(s)	40, 753, 931
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	879
BseXI	GCAGC	3 cut(s)	976, 1025, 1295
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	7 cut(s)	141, 802, 924, 942, 1144, 1403, 1456
BsiSI	CCGG	3 cut(s)	556, 601, 1316
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	3 cut(s)	40, 753, 931
BsmAI	GTCTC	2 cut(s)	1035, 1427
BsmBI	CGTCTC	1 cut(s)	1427
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	2 cut(s)	136, 1169
BsnI	GGCC	7 cut(s)	141, 802, 924, 942, 1144, 1403, 1456
Bso31I	GGTCTC	1 cut(s)	1035
Bsp1407I	TGTACA	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	2 cut(s)	255, 857
BspANI	GGCC	7 cut(s)	141, 802, 924, 942, 1144, 1403, 1456
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	1320, 1457
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	3 cut(s)	547, 645, 1146
BspQI	GCTCTTC	1 cut(s)	1216
BspTNI	GGTCTC	1 cut(s)	1035
BsrDI	GCAATG	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	7 cut(s)	38, 39, 217, 340, 696, 925, 1405
BssNAI	GTATAC	1 cut(s)	211
BssT1I	CCWWGG	4 cut(s)	217, 340, 696, 1405
Bst1107I	GTATAC	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	40, 927
Bst4CI	ACNGT	5 cut(s)	177, 227, 286, 574, 807
Bst6I	CTCTTC	1 cut(s)	1216
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstAUI	TGTACA	1 cut(s)	546
BstBAI	YACGTR	1 cut(s)	1464
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	125, 386, 888
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	8 cut(s)	236, 547, 659, 711, 850, 940, 1286, 1428
BstFNI	CGCG	1 cut(s)	409
BstHHI	GCGC	2 cut(s)	600, 1090
BstMAI	GTCTC	2 cut(s)	1035, 1427
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 251, 1013, 1019, 1067
BstNI	CCWGG	2 cut(s)	40, 927
BstNSI	RCATGY	2 cut(s)	598, 695
BstPAI	GACNNNNGTC	1 cut(s)	1263
BstSCI	CCNGG	2 cut(s)	38, 925
BstSFI	CTRYAG	3 cut(s)	1011, 1074, 1133
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	976, 1025, 1295
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	552, 637
BstYI	RGATCY	2 cut(s)	552, 637
BstZ17I	GTATAC	1 cut(s)	211
BsuRI	GGCC	7 cut(s)	141, 802, 924, 942, 1144, 1403, 1456
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	8 cut(s)	236, 547, 659, 711, 850, 940, 1286, 1428
BtsI	GCAGTG	2 cut(s)	158, 1231
BtsIMutI	CAGTG	6 cut(s)	158, 232, 282, 570, 967, 1231
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	2 cut(s)	600, 1090
Cfr13I	GGNCC	5 cut(s)	923, 940, 1318, 1402, 1455
CseI	GACGC	1 cut(s)	1409
Csp6I	GTAC	3 cut(s)	547, 587, 981
CviAII	CATG	7 cut(s)	218, 350, 595, 634, 692, 879, 1091
CviQI	GTAC	3 cut(s)	547, 587, 981
DdeI	CTNAG	3 cut(s)	125, 386, 888
EaeI	YGGCCR	2 cut(s)	800, 1142
Eam1104I	CTCTTC	1 cut(s)	1216
EarI	CTCTTC	1 cut(s)	1216
Eco130I	CCWWGG	4 cut(s)	217, 340, 696, 1405
Eco31I	GGTCTC	1 cut(s)	1035
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1318
Eco57I	CTGAAG	1 cut(s)	1454
Eco72I	CACGTG	1 cut(s)	1464
EcoO109I	RGGNCCY	3 cut(s)	940, 1402, 1455
EcoRII	CCWGG	2 cut(s)	38, 925
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	4 cut(s)	217, 340, 696, 1405
ErhI	CCWWGG	4 cut(s)	217, 340, 696, 1405
Esp3I	CGTCTC	1 cut(s)	1427
FaeI	CATG	7 cut(s)	221, 353, 598, 637, 695, 882, 1094
FalI	AAGNNNNNCTT	4 cut(s)	985, 1017, 1195, 1227
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	7 cut(s)	217, 349, 594, 633, 691, 878, 1090
FauI	CCCGC	1 cut(s)	864
FbaI	TGATCA	2 cut(s)	7, 784
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	255, 990, 1014, 1284
FokI	GGATG	8 cut(s)	243, 554, 646, 698, 837, 947, 1273, 1415
Fsp4HI	GCNGC	4 cut(s)	255, 990, 1014, 1284
FspBI	CTAG	3 cut(s)	536, 905, 1217
FspI	TGCGCA	1 cut(s)	1089
GlaI	GCGC	2 cut(s)	599, 1089
GluI	GCNGC	4 cut(s)	255, 990, 1014, 1284
HaeIII	GGCC	7 cut(s)	141, 802, 924, 942, 1144, 1403, 1456
HapII	CCGG	3 cut(s)	556, 601, 1316
HgaI	GACGC	1 cut(s)	1409
HhaI	GCGC	2 cut(s)	600, 1090
Hin1II	CATG	7 cut(s)	221, 353, 598, 637, 695, 882, 1094
Hin6I	GCGC	2 cut(s)	598, 1088
HinP1I	GCGC	2 cut(s)	598, 1088
HincII	GTYRAC	2 cut(s)	1081, 1258
HindII	GTYRAC	2 cut(s)	1081, 1258
HinfI	GANTC	5 cut(s)	28, 188, 818, 1082, 1235
HpaII	CCGG	3 cut(s)	556, 601, 1316
HphI	GGTGA	5 cut(s)	165, 338, 794, 1305, 1345
Hpy166II	GTNNAC	5 cut(s)	211, 547, 1081, 1258, 1444
Hpy188I	TCNGA	6 cut(s)	322, 730, 1054, 1155, 1243, 1272
Hpy188III	TCNNGA	4 cut(s)	296, 367, 905, 1432
Hpy8I	GTNNAC	5 cut(s)	211, 547, 1081, 1258, 1444
HpyAV	CCTTC	9 cut(s)	180, 461, 483, 610, 910, 1055, 1214, 1267, 1301
HpyCH4III	ACNGT	5 cut(s)	177, 227, 286, 574, 807
HpyCH4IV	ACGT	1 cut(s)	1463
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 251, 1013, 1019, 1067
HpyF3I	CTNAG	3 cut(s)	125, 386, 888
HpySE526I	ACGT	1 cut(s)	1463
Hsp92II	CATG	7 cut(s)	221, 353, 598, 637, 695, 882, 1094
HspAI	GCGC	2 cut(s)	598, 1088
Ksp22I	TGATCA	2 cut(s)	7, 784
LguI	GCTCTTC	1 cut(s)	1216
LmnI	GCTCC	6 cut(s)	121, 437, 461, 532, 1012, 1366
Lsp1109I	GCAGC	3 cut(s)	976, 1025, 1295
LweI	GCATC	6 cut(s)	232, 668, 976, 1196, 1295, 1437
MaeI	CTAG	3 cut(s)	536, 905, 1217
MaeII	ACGT	1 cut(s)	1463
MaeIII	GTNAC	3 cut(s)	326, 442, 1115
MfeI	CAATTG	1 cut(s)	1356
MflI	RGATCY	2 cut(s)	552, 637
MlyI	GAGTC	1 cut(s)	1076
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	9 cut(s)	45, 131, 374, 805, 901, 931, 1324, 1393, 1446
MseI	TTAA	3 cut(s)	576, 642, 1110
MspA1I	CMGCKG	2 cut(s)	257, 1253
MspI	CCGG	3 cut(s)	556, 601, 1316
MspR9I	CCNGG	2 cut(s)	40, 927
MunI	CAATTG	1 cut(s)	1356
Mva1269I	GAATGC	2 cut(s)	136, 1169
MvaI	CCWGG	2 cut(s)	40, 927
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	5 cut(s)	98, 251, 1013, 1019, 1067
NcoI	CCATGG	1 cut(s)	217
NlaIII	CATG	7 cut(s)	221, 353, 598, 637, 695, 882, 1094
NlaIV	GGNNCC	2 cut(s)	1320, 1457
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	3 cut(s)	326, 442, 1115
NsbI	TGCGCA	1 cut(s)	1089
NspI	RCATGY	2 cut(s)	598, 695
PasI	CCCWGGG	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	1216
PctI	GAATGC	2 cut(s)	136, 1169
PfeI	GAWTC	4 cut(s)	28, 188, 818, 1235
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	256, 991, 1015, 1285
PleI	GAGTC	1 cut(s)	1076
PmaCI	CACGTG	1 cut(s)	1464
PmlI	CACGTG	1 cut(s)	1464
PpsI	GAGTC	1 cut(s)	1076
Ppu21I	YACGTR	1 cut(s)	1464
PshAI	GACNNNNGTC	1 cut(s)	1263
Psp6I	CCWGG	2 cut(s)	38, 925
PspCI	CACGTG	1 cut(s)	1464
PspGI	CCWGG	2 cut(s)	38, 925
PspN4I	GGNNCC	2 cut(s)	1320, 1457
PspPI	GGNCC	5 cut(s)	923, 940, 1318, 1402, 1455
PstI	CTGCAG	1 cut(s)	1015
PsuI	RGATCY	2 cut(s)	552, 637
PsyI	GACNNNGTC	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	3 cut(s)	548, 588, 982
RsaNI	GTAC	3 cut(s)	547, 587, 981
SapI	GCTCTTC	1 cut(s)	1216
SaqAI	TTAA	3 cut(s)	576, 642, 1110
SatI	GCNGC	4 cut(s)	255, 990, 1014, 1284
Sau96I	GGNCC	5 cut(s)	923, 940, 1318, 1402, 1455
SchI	GAGTC	1 cut(s)	1076
ScrFI	CCNGG	2 cut(s)	40, 927
SfaNI	GCATC	6 cut(s)	232, 668, 976, 1196, 1295, 1437
SfcI	CTRYAG	3 cut(s)	1011, 1074, 1133
SinI	GGWCC	1 cut(s)	1318
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	2 cut(s)	255, 857
SspI	AATATT	2 cut(s)	766, 896
SspMI	CTAG	3 cut(s)	536, 905, 1217
StyD4I	CCNGG	2 cut(s)	38, 925
StyI	CCWWGG	4 cut(s)	217, 340, 696, 1405
TaaI	ACNGT	5 cut(s)	177, 227, 286, 574, 807
TaiI	ACGT	1 cut(s)	1466
TatI	WGTACW	2 cut(s)	546, 586
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	4 cut(s)	28, 188, 818, 1235
Tru1I	TTAA	3 cut(s)	576, 642, 1110
Tru9I	TTAA	3 cut(s)	576, 642, 1110
TscAI	CASTG	6 cut(s)	158, 232, 289, 577, 967, 1231
TseFI	GTSAC	3 cut(s)	326, 442, 1115
TseI	GCWGC	3 cut(s)	989, 1013, 1283
Tsp45I	GTSAC	3 cut(s)	326, 442, 1115
TspRI	CASTG	6 cut(s)	158, 232, 289, 577, 967, 1231
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	1318
XapI	RAATTY	3 cut(s)	19, 566, 1385
XbaI	TCTAGA	1 cut(s)	904
XceI	RCATGY	2 cut(s)	598, 695
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 484
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	3 cut(s)	536, 905, 1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.