Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000243.1

Orthogroup ID

OG0004756

Physical Location & Seq

Genomic Coordinates Reverse (-)

88578 .. 95881

Gene Structure 7304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000243.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atgattgatcaattcataaattttgtgattcgccctcccagggcagactataacccagatcagtacctatgggaaagggatttcactcttgcaggcagagcatacagacgacaagacttggagcttaggaatgctagaggccataccttgcagtgtagtcattatcttccttcacctttgccagaggattcttctcttccttgtgttgtatactgccatggaaacagtggatgtagggcagatgcaaatgaagccgctgtaattcttcttccatcaaatatcactgttttcactcttgatttttcgggttcaggcttatctgatggtgactatgtcagccttggttggcatgagagagatgacctcaagatcgtggtttcatatctaagaagcaacaaacaaatctcgcgtataggtctatgggggcgatctatgggagcagtcacttgccttctttatggagcagaagacccttccattgctggaatggtgttggatagtgccttttcaaacttgtatgttctaatgatggagctagtggatgtgtacaagatccggcttcctaaattcaccgttaagatggcagtacaatacatgcgtcggataattgagaagaaggcaaagtttgatatcatggatcttaattccttacaggttgcatccaaaacattcattcctgctttatttggacacgccaaggacgacaagttcatccaaaccagccattctgatctcatctacaagtcctatgcaggggacaaaaatattatattttttgatggtgatcacaattcctctcggccacagttttattatgattcagtttcaattttcttttacaatgttcttcatcccccgcaaatatcttcttctcattcatgtaagcctgagaaatattatgatctagaggatttgaaggttggcgctggtttggatgagggcctgttacataagataatcagtggtgttcattctgctggtactgatgctgcaagttcttcttatgctcctgcagccattgcaaccgaaaaatctgtgggagaccttctctctgaaatcgcaccaatggctactatagttgactctgcacatgatgaagatggcacacttaattgtcacgatacaccaaatctacaggatcggccaaatggtcagaatgaagaatgctgttcatatacaagctcaaatagagagagttggggaagatgctcttcactagaaggcagtgatgaagaatcttctgattgcacagctgttgacaatagtcatcagaaggtgtatgcagcaacccttcaatgtgagcaacaaaaatcaccggacctgaagaaagaggtgaagaaaaagaagaaagttccaattgctccaaagaagcccaaaagtgagaaatttgaaaagttagaggcccttggcaaaagattgcgtctttgcatcctgaagcgagtaaaccataggaggcaccacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

488

Amino Acids

54.71

Weight (kDa)

6.5

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17150 AT4G17150 AT4G17150 AT4G17150 AT4G17150
fragaria_vesca	FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060 FvH4_3g00060
malus_domestica	MD05G1364500.v1.1
prunus_persica	Prupe.4G000500_v2.0.a1 Prupe.4G000500_v2.0.a1
pyrus_communis	pycom05g33060 pycom10g29160
rosa_chinensis	RchiOBHm_Chr5g0000061
rosa_laevigata	RLG00000030840
rosa_multiflora	Rmu_ssc0000243.1_g000025
rosa_roxburghii	Rroxscaffold_1G00076010
rosa_rugosa	Rorug04G0381000 Rorug04G0381100 Rorug04G0381200
rosa_samantha	Rh5AG000500 Rh5BG001700 Rh5CG000600 Rh5DG000500
rosa_wichuraiana	Rw5G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1455
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	255, 857
AclWI	GGATC	3 cut(s)	547, 645, 1146
AcoI	YGGCCR	2 cut(s)	800, 1142
AcsI	RAATTY	3 cut(s)	19, 566, 1385
AcuI	CTGAAG	2 cut(s)	1343, 1454
AfaI	GTAC	4 cut(s)	65, 548, 588, 982
AfiI	CCNNNNNNNGG	2 cut(s)	40, 753
AgsI	TTSAA	5 cut(s)	510, 828, 916, 1295, 1391
AjnI	CCWGG	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	4 cut(s)	124, 535, 1182, 1253
AluI	AGCT	4 cut(s)	124, 535, 1182, 1253
Alw26I	GTCTC	1 cut(s)	1035
AlwI	GGATC	3 cut(s)	547, 645, 1146
AoxI	GGCC	5 cut(s)	139, 800, 940, 1142, 1401
ApeKI	GCWGC	3 cut(s)	989, 1013, 1283
ApoI	RAATTY	3 cut(s)	19, 566, 1385
AspLEI	GCGC	1 cut(s)	926
AspS9I	GGNCC	3 cut(s)	940, 1318, 1402
AsuHPI	GGTGA	6 cut(s)	165, 338, 562, 794, 1305, 1345
AvaII	GGWCC	1 cut(s)	1318
BanI	GGYRCC	1 cut(s)	1455
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	976, 1025, 1295
BccI	CCATC	6 cut(s)	280, 317, 523, 574, 773, 1094
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	2 cut(s)	7, 784
BcoDI	GTCTC	1 cut(s)	1035
BfaI	CTAG	4 cut(s)	135, 536, 905, 1217
BfmI	CTRYAG	3 cut(s)	1011, 1074, 1133
BfoI	RGCGCY	1 cut(s)	927
BisI	GCNGC	4 cut(s)	255, 990, 1014, 1284
BlsI	GCNGC	4 cut(s)	256, 991, 1015, 1285
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	1318
BmgT120I	GGNCC	3 cut(s)	940, 1318, 1402
BmiI	GGNNCC	1 cut(s)	1457
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	5 cut(s)	232, 668, 976, 1196, 1437
BoxI	GACNNNNGTC	1 cut(s)	1263
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	4 cut(s)	348, 380, 1032, 1064
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	1035
BsaJI	CCNNGG	6 cut(s)	38, 39, 217, 340, 696, 1405
BsaWI	WCCGGW	1 cut(s)	1315
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 753
Bse3DI	GCAATG	2 cut(s)	477, 1017
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	6 cut(s)	38, 39, 217, 340, 696, 1405
BseGI	GGATG	7 cut(s)	236, 547, 659, 711, 850, 940, 1428
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	2 cut(s)	40, 753
BseMI	GCAATG	2 cut(s)	477, 1017
BseMII	CTCAG	1 cut(s)	879
BseXI	GCAGC	3 cut(s)	976, 1025, 1295
BsgI	GTGCAG	1 cut(s)	1071
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
BshNI	GGYRCC	1 cut(s)	1455
BsiSI	CCGG	2 cut(s)	556, 1316
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	2 cut(s)	40, 753
BsmAI	GTCTC	1 cut(s)	1035
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	2 cut(s)	136, 1169
BsnI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
Bso31I	GGTCTC	1 cut(s)	1035
Bsp1407I	TGTACA	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	2 cut(s)	255, 857
BspANI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	1457
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	3 cut(s)	547, 645, 1146
BspQI	GCTCTTC	1 cut(s)	1216
BspT107I	GGYRCC	1 cut(s)	1455
BspTNI	GGTCTC	1 cut(s)	1035
BsrDI	GCAATG	2 cut(s)	477, 1017
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	6 cut(s)	38, 39, 217, 340, 696, 1405
BssNAI	GTATAC	1 cut(s)	211
BssT1I	CCWWGG	4 cut(s)	217, 340, 696, 1405
Bst1107I	GTATAC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	4 cut(s)	227, 286, 574, 807
Bst6I	CTCTTC	2 cut(s)	201, 1216
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	125, 386, 888
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	7 cut(s)	236, 547, 659, 711, 850, 940, 1428
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	1 cut(s)	927
BstHHI	GCGC	1 cut(s)	926
BstMAI	GTCTC	1 cut(s)	1035
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 251, 1013, 1019, 1067
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	598
BstPAI	GACNNNNGTC	1 cut(s)	1263
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	3 cut(s)	1011, 1074, 1133
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	976, 1025, 1295
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	552, 637
BstYI	RGATCY	2 cut(s)	552, 637
BstZ17I	GTATAC	1 cut(s)	211
BsuRI	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	7 cut(s)	236, 547, 659, 711, 850, 940, 1428
BtsI	GCAGTG	2 cut(s)	158, 1231
BtsIMutI	CAGTG	5 cut(s)	158, 232, 282, 967, 1231
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	926
Cfr13I	GGNCC	3 cut(s)	940, 1318, 1402
CseI	GACGC	2 cut(s)	587, 1409
Csp6I	GTAC	4 cut(s)	64, 547, 587, 981
CviAII	CATG	7 cut(s)	218, 350, 595, 634, 879, 1091, 1464
CviQI	GTAC	4 cut(s)	64, 547, 587, 981
DdeI	CTNAG	3 cut(s)	125, 386, 888
EaeI	YGGCCR	2 cut(s)	800, 1142
Eam1104I	CTCTTC	2 cut(s)	201, 1216
EarI	CTCTTC	2 cut(s)	201, 1216
Eco130I	CCWWGG	4 cut(s)	217, 340, 696, 1405
Eco31I	GGTCTC	1 cut(s)	1035
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1318
Eco57I	CTGAAG	2 cut(s)	1343, 1454
EcoO109I	RGGNCCY	2 cut(s)	940, 1402
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	4 cut(s)	217, 340, 696, 1405
ErhI	CCWWGG	4 cut(s)	217, 340, 696, 1405
FaeI	CATG	7 cut(s)	221, 353, 598, 637, 882, 1094, 1467
FalI	AAGNNNNNCTT	4 cut(s)	985, 1017, 1195, 1227
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	7 cut(s)	217, 349, 594, 633, 878, 1090, 1463
FauI	CCCGC	1 cut(s)	864
FbaI	TGATCA	2 cut(s)	7, 784
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	255, 990, 1014, 1284
FokI	GGATG	7 cut(s)	243, 554, 646, 698, 837, 947, 1415
Fsp4HI	GCNGC	4 cut(s)	255, 990, 1014, 1284
FspBI	CTAG	4 cut(s)	135, 536, 905, 1217
GlaI	GCGC	1 cut(s)	925
GluI	GCNGC	4 cut(s)	255, 990, 1014, 1284
HaeII	RGCGCY	1 cut(s)	927
HaeIII	GGCC	5 cut(s)	141, 802, 942, 1144, 1403
HapII	CCGG	2 cut(s)	556, 1316
HgaI	GACGC	2 cut(s)	587, 1409
HhaI	GCGC	1 cut(s)	926
Hin1II	CATG	7 cut(s)	221, 353, 598, 637, 882, 1094, 1467
Hin6I	GCGC	1 cut(s)	924
HinP1I	GCGC	1 cut(s)	924
HincII	GTYRAC	2 cut(s)	1081, 1258
HindII	GTYRAC	2 cut(s)	1081, 1258
HinfI	GANTC	5 cut(s)	28, 188, 818, 1082, 1235
HpaII	CCGG	2 cut(s)	556, 1316
HphI	GGTGA	6 cut(s)	165, 338, 562, 794, 1305, 1345
Hpy166II	GTNNAC	5 cut(s)	211, 547, 1081, 1258, 1444
Hpy188I	TCNGA	7 cut(s)	322, 603, 730, 1054, 1155, 1243, 1272
Hpy188III	TCNNGA	5 cut(s)	296, 367, 905, 1118, 1432
Hpy8I	GTNNAC	5 cut(s)	211, 547, 1081, 1258, 1444
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	9 cut(s)	180, 461, 483, 610, 910, 1055, 1214, 1267, 1301
HpyCH4III	ACNGT	4 cut(s)	227, 286, 574, 807
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 251, 1013, 1019, 1067
HpyF3I	CTNAG	3 cut(s)	125, 386, 888
Hsp92II	CATG	7 cut(s)	221, 353, 598, 637, 882, 1094, 1467
HspAI	GCGC	1 cut(s)	924
Ksp22I	TGATCA	2 cut(s)	7, 784
LguI	GCTCTTC	1 cut(s)	1216
LmnI	GCTCC	6 cut(s)	121, 437, 461, 532, 1012, 1366
Lsp1109I	GCAGC	3 cut(s)	976, 1025, 1295
LweI	GCATC	5 cut(s)	232, 668, 976, 1196, 1437
MaeI	CTAG	4 cut(s)	135, 536, 905, 1217
MaeIII	GTNAC	4 cut(s)	326, 442, 945, 1115
MfeI	CAATTG	1 cut(s)	1356
MflI	RGATCY	2 cut(s)	552, 637
MlyI	GAGTC	1 cut(s)	1076
MmeI	TCCRAC	2 cut(s)	474, 581
MseI	TTAA	3 cut(s)	576, 642, 1110
MspA1I	CMGCKG	2 cut(s)	257, 1253
MspI	CCGG	2 cut(s)	556, 1316
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	1356
Mva1269I	GAATGC	2 cut(s)	136, 1169
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	5 cut(s)	98, 251, 1013, 1019, 1067
NcoI	CCATGG	1 cut(s)	217
NlaIII	CATG	7 cut(s)	221, 353, 598, 637, 882, 1094, 1467
NlaIV	GGNNCC	1 cut(s)	1457
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	3 cut(s)	326, 442, 1115
NspI	RCATGY	1 cut(s)	598
PasI	CCCWGGG	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	1216
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PctI	GAATGC	2 cut(s)	136, 1169
PfeI	GAWTC	4 cut(s)	28, 188, 818, 1235
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	256, 991, 1015, 1285
PleI	GAGTC	1 cut(s)	1076
PpsI	GAGTC	1 cut(s)	1076
PshAI	GACNNNNGTC	1 cut(s)	1263
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	1457
PspPI	GGNCC	3 cut(s)	940, 1318, 1402
PstI	CTGCAG	1 cut(s)	1015
PsuI	RGATCY	2 cut(s)	552, 637
PsyI	GACNNNGTC	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	4 cut(s)	65, 548, 588, 982
RsaNI	GTAC	4 cut(s)	64, 547, 587, 981
SapI	GCTCTTC	1 cut(s)	1216
SaqAI	TTAA	3 cut(s)	576, 642, 1110
SatI	GCNGC	4 cut(s)	255, 990, 1014, 1284
Sau96I	GGNCC	3 cut(s)	940, 1318, 1402
SchI	GAGTC	1 cut(s)	1076
ScrFI	CCNGG	1 cut(s)	40
SfaNI	GCATC	5 cut(s)	232, 668, 976, 1196, 1437
SfcI	CTRYAG	3 cut(s)	1011, 1074, 1133
SinI	GGWCC	1 cut(s)	1318
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	2 cut(s)	255, 857
SspI	AATATT	2 cut(s)	766, 896
SspMI	CTAG	4 cut(s)	135, 536, 905, 1217
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	4 cut(s)	217, 340, 696, 1405
TaaI	ACNGT	4 cut(s)	227, 286, 574, 807
TatI	WGTACW	2 cut(s)	546, 586
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	4 cut(s)	28, 188, 818, 1235
Tru1I	TTAA	3 cut(s)	576, 642, 1110
Tru9I	TTAA	3 cut(s)	576, 642, 1110
TscAI	CASTG	5 cut(s)	158, 232, 289, 967, 1231
TseFI	GTSAC	3 cut(s)	326, 442, 1115
TseI	GCWGC	3 cut(s)	989, 1013, 1283
Tsp45I	GTSAC	3 cut(s)	326, 442, 1115
TspRI	CASTG	5 cut(s)	158, 232, 289, 967, 1231
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	1318
XapI	RAATTY	3 cut(s)	19, 566, 1385
XbaI	TCTAGA	1 cut(s)	904
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 484
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	4 cut(s)	135, 536, 905, 1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.