Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Forward (+)

9803624 .. 9805410

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGTTGTTCTCCCCGCCAATCTCTTCTTCATCTCTTCAAAATCCCAATTTCATTCCCAAATTTTCATTCTCCCTCCTCTCCAGTAACCGCTTCTCTCTCCTCTCCGTCACTCGAGCTTCCTCCGACAGTGGATCAACCTCTCCCACCGCCGCCGTCTCCGTGGAGGCTCCTGAGCCCGTGGAAGTGATAGTTAAAGAGCCTCCGCAATCAACACCGGCGGTTAAAAAGGAAGAAACCGCCACCGCTAAAAATGTCGCCGTCGAAGGTGAAGAGATGAAAACAACGGAGAGTGTTGTCAAATTCCAGGATGCGAGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTAGAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTTCGATACATCGATTATTCCATGGTGGGCTTGGATTAAGAGATACCACTTACCTGAAGCTGAACTCTTAAATGGTCGTGCGGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGACTTGTTGATCAAATGGGGAATTTCTTCTGCAAGACACTATTGTTTGTGGCTGTGGCTGGAGTTTTGTTTATTCGTAAGAATGAGGATGTGGATAAACTCAAGAACTTGTTTGATGAGACTACATTGTATGATAAGCAATGGCAAGCAGCTTGGAAAAATGATGATGATGAGTCATTGGGTTCTAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

262

Amino Acids

29.4

Weight (kDa)

4.94

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	17, 91, 150, 153, 206, 221, 240, 246, 539
AclWI	GGATC	2 cut(s)	142, 345
AcsI	RAATTY	3 cut(s)	62, 302, 613
AcuI	CTGAAG	1 cut(s)	534
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	306
AjuI	GAANNNNNNNTTGG	6 cut(s)	13, 45, 53, 85, 355, 387
AluBI	AGCT	3 cut(s)	119, 518, 743
AluI	AGCT	3 cut(s)	119, 518, 743
Alw26I	GTCTC	2 cut(s)	163, 704
AlwI	GGATC	2 cut(s)	142, 345
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	3 cut(s)	62, 302, 613
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	2 cut(s)	347, 617
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	752
BccI	CCATC	2 cut(s)	312, 353
BceAI	ACGGC	2 cut(s)	140, 245
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	163, 704
BfaI	CTAG	1 cut(s)	416
BisI	GCNGC	3 cut(s)	153, 540, 741
BlsI	GCNGC	3 cut(s)	154, 541, 742
Bme1390I	CCNGG	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	2 cut(s)	67, 672
Bpu10I	CCTNAGC	2 cut(s)	174, 393
BpuEI	CTTGAG	1 cut(s)	677
Bsa29I	ATCGAT	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	162, 180, 479
BsaWI	WCCGGW	1 cut(s)	584
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	84, 452
Bse3DI	GCAATG	1 cut(s)	737
BseBI	CCWGG	1 cut(s)	308
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	3 cut(s)	162, 180, 479
BseGI	GGATG	2 cut(s)	316, 685
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	2 cut(s)	165, 384
BseNI	ACTGG	2 cut(s)	84, 452
BseRI	GAGGAG	2 cut(s)	68, 92
BseXI	GCAGC	1 cut(s)	752
BshVI	ATCGAT	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	218, 585
BsmAI	GTCTC	2 cut(s)	163, 704
BsmBI	CGTCTC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	134, 337, 601
Bsp19I	CCATGG	1 cut(s)	479
BspACI	CCGC	9 cut(s)	17, 91, 150, 153, 206, 221, 240, 246, 539
BspCNI	CTCAG	2 cut(s)	166, 385
BspDI	ATCGAT	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	142, 345
BsrDI	GCAATG	1 cut(s)	737
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	84, 452
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	162, 180, 479
BssMI	GATC	3 cut(s)	134, 337, 601
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	131, 348
Bst6I	CTCTTC	4 cut(s)	31, 42, 267, 414
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	3 cut(s)	174, 393, 777
BstDSI	CCRYGG	3 cut(s)	162, 180, 479
BstF5I	GGATG	2 cut(s)	316, 685
BstKTI	GATC	3 cut(s)	137, 340, 604
BstMAI	GTCTC	2 cut(s)	163, 704
BstMBI	GATC	3 cut(s)	134, 337, 601
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	470
BsuTUI	ATCGAT	1 cut(s)	470
BtgI	CCRYGG	3 cut(s)	162, 180, 479
BtgZI	GCGATG	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	316, 685
BtsIMutI	CAGTG	2 cut(s)	136, 459
Cac8I	GCNNGC	1 cut(s)	738
Cfr10I	RCCGGY	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	470
CviAII	CATG	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	174, 393, 777
DpnI	GATC	3 cut(s)	136, 339, 603
DpnII	GATC	3 cut(s)	134, 337, 601
Eam1104I	CTCTTC	4 cut(s)	31, 42, 267, 414
EarI	CTCTTC	4 cut(s)	31, 42, 267, 414
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	479
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	483
FaiI	YATR	3 cut(s)	481, 560, 723
FatI	CATG	1 cut(s)	479
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	153, 540, 741
FokI	GGATG	2 cut(s)	323, 692
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	153, 540, 741
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	3 cut(s)	153, 540, 741
GsuI	CTGGAG	2 cut(s)	67, 672
HapII	CCGG	2 cut(s)	218, 585
Hin1II	CATG	1 cut(s)	483
HinfI	GANTC	4 cut(s)	377, 424, 552, 764
HpaII	CCGG	2 cut(s)	218, 585
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	127, 342
Hpy188III	TCNNGA	4 cut(s)	173, 352, 428, 694
Hpy99I	CGWCG	2 cut(s)	266, 449
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	131, 348
HpyCH4V	TGCA	1 cut(s)	624
HpyF3I	CTNAG	3 cut(s)	174, 393, 777
Hsp92II	CATG	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	134, 337, 601
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	1 cut(s)	752
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	3 cut(s)	86, 109, 440
MalI	GATC	3 cut(s)	136, 339, 603
MboI	GATC	3 cut(s)	134, 337, 601
MboII	GAAGA	8 cut(s)	18, 21, 29, 245, 284, 417, 431, 610
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	4 cut(s)	49, 62, 302, 613
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	9 cut(s)	86, 89, 113, 133, 151, 160, 213, 388, 670
MroXI	GAANNNNTTC	2 cut(s)	347, 617
MseI	TTAA	5 cut(s)	195, 225, 324, 495, 527
MspI	CCGG	2 cut(s)	218, 585
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	479
NdeII	GATC	3 cut(s)	134, 337, 601
NlaIII	CATG	1 cut(s)	483
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	114
PdmI	GAANNNNTTC	2 cut(s)	347, 617
PfeI	GAWTC	3 cut(s)	377, 424, 552
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	154, 541, 742
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	337
SaqAI	TTAA	5 cut(s)	195, 225, 324, 495, 527
SatI	GCNGC	3 cut(s)	153, 540, 741
Sau3AI	GATC	3 cut(s)	134, 337, 601
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	121, 143, 271, 514, 520, 745
SfaNI	GCATC	1 cut(s)	301
Sfr274I	CTCGAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	114, 692
SmoI	CTYRAG	2 cut(s)	114, 692
Sse9I	AATT	4 cut(s)	49, 62, 302, 613
SsiI	CCGC	9 cut(s)	17, 91, 150, 153, 206, 221, 240, 246, 539
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	2 cut(s)	131, 348
TaqI	TCGA	6 cut(s)	115, 264, 351, 462, 470, 573
TasI	AATT	4 cut(s)	49, 62, 302, 613
TauI	GCSGC	2 cut(s)	155, 542
TfiI	GAWTC	3 cut(s)	377, 424, 552
Tru1I	TTAA	5 cut(s)	195, 225, 324, 495, 527
Tru9I	TTAA	5 cut(s)	195, 225, 324, 495, 527
TscAI	CASTG	2 cut(s)	136, 459
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	21, 43, 57, 293
TspGWI	ACGGA	3 cut(s)	97, 151, 302
TspRI	CASTG	2 cut(s)	136, 459
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	3 cut(s)	62, 302, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XhoI	CTCGAG	1 cut(s)	114
XmnI	GAANNNNTTC	2 cut(s)	347, 617
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.