Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

6803128 .. 6805495

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCCATTTCCATGGCCTTGTTTTCTCCCACAACCCATCTCCCAACCCTCTCTCCTTCCTCCTCATCACACTTCAAACCCCTCCTGACCCACAAGCCTTATCTCTCTCTCAGACCCAAGAACCTCCTCAGAGCCTCGGCTGAGAATGGAGCTGGAAACTCAGCTGCCACTACCGTGGAGTCCAAAGCAGAGCCCGATGTCCCGGAACCCGGCGCCAAGGCGGTTCCCTTGAAGAGTGAGAGCTCTGCTGGGGCTAACGGGTCAGCTGGACCAGCTGAGGAGGTGACTGTGGGGAATTTGTTTGAAGATGGGAGATGGGTCAATGGGACTTGGGATTTGAAGCAGTTTGAGAAAAGTGGCAAAACTGACTGGGATGCTGTTATTGATGCTGAGGCCAGGAGGAGAAAATGGCTCCAGGACAACCCGGAATCATCCAGTAATGAGAACCCTGTGTTTTTTGACACCTCCATTGTACCTTGGTGGGCATGGATAAAGAGATACCATTTACCTGAAGCTGAACTACTTAACGGTCGTGCTGCCATGATAGGTTTTTTCATGGCGTATTTTGTTGATAGCTTGACTGGAGTTGGCCTAGTTGACCAAATGGGCAATTTCTTCTGCAAAACATTATTGTTTGTAGCTGTAGGGGGAGTGCTTCTGATCCGCAAGAACGAGGATGTTGAAAACCTAAAGAAACTACTTGAAGAGACGACGTTTTATGATAAGCAATGGCAAGCAACCTGGCAGGACGAGACGCCGGCTAGCAGTAGCAAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

261

Amino Acids

28.71

Weight (kDa)

5.5

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	2 cut(s)	221, 664
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	2 cut(s)	213, 755
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	76, 232, 305, 340, 683, 704
AjnI	CCWGG	3 cut(s)	395, 414, 740
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	8 cut(s)	152, 164, 243, 266, 275, 515, 576, 641
AluI	AGCT	8 cut(s)	152, 164, 243, 266, 275, 515, 576, 641
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	701, 746
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	3 cut(s)	15, 393, 589
ApeKI	GCWGC	2 cut(s)	164, 536
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	3 cut(s)	203, 210, 425
AsuHPI	GGTGA	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	761
AvaII	GGWCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	195, 245
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
Bbv12I	GWGCWC	1 cut(s)	245
BbvCI	CCTCAGC	2 cut(s)	276, 390
BbvI	GCAGC	2 cut(s)	151, 523
BccI	CCATC	3 cut(s)	45, 302, 309
BciT130I	CCWGG	3 cut(s)	397, 416, 742
BcnI	CCSGG	3 cut(s)	203, 210, 425
BcoDI	GTCTC	2 cut(s)	701, 746
BfaI	CTAG	2 cut(s)	593, 762
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	2 cut(s)	165, 537
BlsI	GCNGC	2 cut(s)	166, 538
Bme1390I	CCNGG	6 cut(s)	203, 210, 397, 416, 425, 742
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	4 cut(s)	207, 214, 225, 413
BmrFI	CCNGG	6 cut(s)	203, 210, 397, 416, 425, 742
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	364, 376
BmtI	GCTAGC	1 cut(s)	765
BmuI	ACTGGG	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	398, 603
Bpu10I	CCTNAGC	2 cut(s)	276, 390
BpuMI	CCSGG	3 cut(s)	203, 210, 425
BsaHI	GRCGYC	2 cut(s)	213, 755
BsaJI	CCNNGG	5 cut(s)	12, 135, 174, 216, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	3 cut(s)	374, 435, 586
Bse3DI	GCAATG	1 cut(s)	734
BseBI	CCWGG	3 cut(s)	397, 416, 742
BseDI	CCNNGG	5 cut(s)	12, 135, 174, 216, 476
BseGI	GGATG	3 cut(s)	379, 431, 682
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	6 cut(s)	124, 132, 142, 174, 267, 381
BseNI	ACTGG	3 cut(s)	374, 435, 586
BseRI	GAGGAG	4 cut(s)	52, 116, 293, 415
BseXI	GCAGC	2 cut(s)	151, 523
BseYI	CCCAGC	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	3 cut(s)	17, 395, 591
BshNI	GGYRCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	4 cut(s)	203, 210, 425, 758
BslFI	GGGAC	2 cut(s)	185, 340
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	701, 746
BsmBI	CGTCTC	2 cut(s)	701, 746
BsmFI	GGGAC	2 cut(s)	185, 340
BsnI	GGCC	3 cut(s)	17, 395, 591
Bsp1286I	GDGCHC	2 cut(s)	195, 245
Bsp143I	GATC	1 cut(s)	660
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	221, 664
BspANI	GGCC	3 cut(s)	17, 395, 591
BspCNI	CTCAG	6 cut(s)	123, 133, 141, 173, 268, 382
BspLI	GGNNCC	4 cut(s)	207, 214, 225, 413
BspOI	GCTAGC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	374, 435, 586
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	5 cut(s)	12, 135, 174, 216, 476
BssMI	GATC	1 cut(s)	660
BssNI	GRCGYC	2 cut(s)	213, 755
BssT1I	CCWWGG	3 cut(s)	12, 216, 476
Bst2UI	CCWGG	3 cut(s)	397, 416, 742
Bst4CI	ACNGT	3 cut(s)	175, 289, 530
Bst6I	CTCTTC	2 cut(s)	227, 699
BstACI	GRCGYC	2 cut(s)	213, 755
BstC8I	GCNNGC	3 cut(s)	735, 759, 763
BstDEI	CTNAG	6 cut(s)	110, 128, 141, 160, 276, 390
BstDSI	CCRYGG	2 cut(s)	12, 174
BstF5I	GGATG	3 cut(s)	379, 431, 682
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	2 cut(s)	701, 746
BstMBI	GATC	1 cut(s)	660
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	3 cut(s)	397, 416, 742
BstSCI	CCNGG	6 cut(s)	201, 208, 395, 414, 423, 740
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	151, 523
BstXI	CCANNNNNNTGG	2 cut(s)	13, 175
BsuRI	GGCC	3 cut(s)	17, 395, 591
BtgI	CCRYGG	2 cut(s)	12, 174
BtsCI	GGATG	3 cut(s)	379, 431, 682
Cac8I	GCNNGC	3 cut(s)	735, 759, 763
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	269
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	4 cut(s)	13, 486, 541, 556
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	6 cut(s)	110, 128, 141, 160, 276, 390
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
Eam1104I	CTCTTC	2 cut(s)	227, 699
EarI	CTCTTC	2 cut(s)	227, 699
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	3 cut(s)	12, 216, 476
Eco24I	GRGCYC	2 cut(s)	195, 245
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	243
EcoRII	CCWGG	3 cut(s)	395, 414, 740
EcoT14I	CCWWGG	3 cut(s)	12, 216, 476
EcoT38I	GRGCYC	2 cut(s)	195, 245
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	3 cut(s)	12, 216, 476
Esp3I	CGTCTC	2 cut(s)	701, 746
FaeI	CATG	4 cut(s)	16, 489, 544, 559
FaiI	YATR	5 cut(s)	14, 487, 542, 557, 720
FaqI	GGGAC	2 cut(s)	185, 340
FatI	CATG	4 cut(s)	12, 485, 540, 555
Fnu4HI	GCNGC	2 cut(s)	165, 537
FokI	GGATG	3 cut(s)	386, 418, 689
FriOI	GRGCYC	2 cut(s)	195, 245
Fsp4HI	GCNGC	2 cut(s)	165, 537
FspBI	CTAG	2 cut(s)	593, 762
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	165, 537
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	398, 603
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	17, 395, 591
HapII	CCGG	4 cut(s)	203, 210, 425, 758
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	2 cut(s)	213, 755
Hin1II	CATG	4 cut(s)	16, 489, 544, 559
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	179, 428
HpaII	CCGG	4 cut(s)	203, 210, 425, 758
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	3 cut(s)	113, 131, 660
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	598
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	3 cut(s)	175, 289, 530
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	6 cut(s)	110, 128, 141, 160, 276, 390
HpySE526I	ACGT	1 cut(s)	713
Hsp92I	GRCGYC	2 cut(s)	213, 755
Hsp92II	CATG	4 cut(s)	16, 489, 544, 559
HspAI	GCGC	1 cut(s)	213
KasI	GGCGCC	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	757
KroNI	GCCGGC	1 cut(s)	759
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	2 cut(s)	149, 417
Lsp1109I	GCAGC	2 cut(s)	151, 523
LweI	GCATC	2 cut(s)	364, 376
MaeI	CTAG	2 cut(s)	593, 762
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	4 cut(s)	244, 317, 607, 716
MhlI	GDGCHC	2 cut(s)	195, 245
MluCI	AATT	2 cut(s)	295, 610
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	757
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	2 cut(s)	11, 173
MspA1I	CMGCKG	3 cut(s)	164, 266, 275
MspI	CCGG	4 cut(s)	203, 210, 425, 758
MspR9I	CCNGG	6 cut(s)	203, 210, 397, 416, 425, 742
MvaI	CCWGG	3 cut(s)	397, 416, 742
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	1 cut(s)	759
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	3 cut(s)	203, 210, 425
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	660
NgoMIV	GCCGGC	1 cut(s)	757
NheI	GCTAGC	1 cut(s)	761
NlaIII	CATG	4 cut(s)	16, 489, 544, 559
NlaIV	GGNNCC	4 cut(s)	207, 214, 225, 413
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	428
PfoI	TCCNGGA	2 cut(s)	201, 414
PkrI	GCNGC	2 cut(s)	166, 538
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	395, 414, 740
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	3 cut(s)	395, 414, 740
PspN4I	GGNNCC	4 cut(s)	207, 214, 225, 413
PspPI	GGNCC	1 cut(s)	269
PvuII	CAGCTG	3 cut(s)	164, 266, 275
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	2 cut(s)	11, 173
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	165, 537
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	6 cut(s)	203, 210, 397, 416, 425, 742
SduI	GDGCHC	2 cut(s)	195, 245
SfaNI	GCATC	2 cut(s)	364, 376
SfcI	CTRYAG	1 cut(s)	642
SfoI	GGCGCC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	2 cut(s)	11, 173
Sse9I	AATT	2 cut(s)	295, 610
SsiI	CCGC	2 cut(s)	221, 664
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	593, 762
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	6 cut(s)	201, 208, 395, 414, 423, 740
StyI	CCWWGG	3 cut(s)	12, 216, 476
TaaI	ACNGT	3 cut(s)	175, 289, 530
TaiI	ACGT	1 cut(s)	716
TasI	AATT	2 cut(s)	295, 610
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	164, 536
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	295
XspI	CTAG	2 cut(s)	593, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.