Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

19133986 .. 19135414

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTATATCCATGGCGTTATTCTCTCCGCCGATCTCTTCCTCACTTCAGAACCCTAATCTCATCCCCAAGATCTCAACCTCTCTTCTCTCCACCAAGCGTTTCTCTCTAATCTCCGTCCCTAGAGCTTCCTCCGACAATGGTACGACTTCCCCCGTCGTGGAGATTCCGAAGCCTGCTTCTGTGGCTGTAGAGGAAGTTCCAGTTAAATCTCCAGCCGAAAGCTCCTCCGCTTCTGAAAACGGCGCCGTTGGAGGTGAAGCGACTGATTCGAGTACTGAGACGGTAATCAAATATCAGAATGCGAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCAAAACTGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAACAACGAGTAACGACGAGCTTGTTGTCTTCGATACTTCGATTATTCCATGGTGGGCATGGATGAAGAGATACCATCTACCTGAAGCTGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTGATCAAATGGGAAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCTTCATCCGTAAGAATGAAGATTTAGACAAACTTAAGGATCTGTTCGATGAGACTACGTTATATGACAAACAATGGCAAGCTGCATGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

258

Amino Acids

28.6

Weight (kDa)

4.94

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	2 cut(s)	29, 231
AclWI	GGATC	2 cut(s)	336, 696
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	2 cut(s)	32, 525
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	145, 277
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	2 cut(s)	410, 768
AluBI	AGCT	6 cut(s)	128, 225, 442, 509, 641, 731
AluI	AGCT	6 cut(s)	128, 225, 442, 509, 641, 731
Alw26I	GTCTC	2 cut(s)	275, 695
AlwI	GGATC	2 cut(s)	336, 696
ApeKI	GCWGC	2 cut(s)	530, 731
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	517, 718
BccI	CCATC	2 cut(s)	344, 504
BceAI	ACGGC	2 cut(s)	233, 259
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	275, 695
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	189, 636
BfoI	RGCGCY	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	683
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	2 cut(s)	531, 732
BlsI	GCNGC	2 cut(s)	532, 733
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	442
BpmI	CTGGAG	2 cut(s)	198, 663
BpuMI	CCSGG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	12, 470
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	12, 470
BseGI	GGATG	3 cut(s)	63, 489, 654
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	270, 375
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	217, 409
BseXI	GCAGC	2 cut(s)	517, 718
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	419, 576
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	275, 695
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	33, 72, 328, 592, 688
Bsp19I	CCATGG	2 cut(s)	12, 470
BspACI	CCGC	2 cut(s)	29, 231
BspCNI	CTCAG	2 cut(s)	271, 376
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	336, 696
BspT107I	GGYRCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	12, 470
BssMI	GATC	5 cut(s)	33, 72, 328, 592, 688
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	12, 470
Bst4CI	ACNGT	3 cut(s)	286, 339, 760
Bst6I	CTCTTC	4 cut(s)	43, 90, 482, 656
BstACI	GRCGYC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	683
BstC8I	GCNNGC	2 cut(s)	177, 729
BstDEI	CTNAG	2 cut(s)	279, 384
BstDSI	CCRYGG	2 cut(s)	12, 470
BstF5I	GGATG	3 cut(s)	63, 489, 654
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	5 cut(s)	36, 75, 331, 595, 691
BstMAI	GTCTC	2 cut(s)	275, 695
BstMBI	GATC	5 cut(s)	33, 72, 328, 592, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	2 cut(s)	189, 636
BstV1I	GCAGC	2 cut(s)	517, 718
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	3 cut(s)	72, 328, 688
BstYI	RGATCY	3 cut(s)	72, 328, 688
BtgI	CCRYGG	2 cut(s)	12, 470
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	3 cut(s)	63, 489, 654
Cac8I	GCNNGC	2 cut(s)	177, 729
CfoI	GCGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	144, 276
CviAII	CATG	5 cut(s)	13, 471, 480, 550, 735
CviQI	GTAC	2 cut(s)	144, 276
DdeI	CTNAG	2 cut(s)	279, 384
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	5 cut(s)	35, 74, 330, 594, 690
DpnII	GATC	5 cut(s)	33, 72, 328, 592, 688
Eam1104I	CTCTTC	4 cut(s)	43, 90, 482, 656
EarI	CTCTTC	4 cut(s)	43, 90, 482, 656
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	12, 470
Eco57I	CTGAAG	2 cut(s)	32, 525
EcoT14I	CCWWGG	2 cut(s)	12, 470
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	12, 470
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	5 cut(s)	16, 474, 483, 553, 738
FaiI	YATR	8 cut(s)	8, 14, 472, 481, 551, 712, 714, 736
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	5 cut(s)	12, 470, 479, 549, 734
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	531, 732
FokI	GGATG	3 cut(s)	50, 496, 641
Fsp4HI	GCNGC	2 cut(s)	531, 732
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	531, 732
GsuI	CTGGAG	2 cut(s)	198, 663
HaeII	RGCGCY	1 cut(s)	249
HapII	CCGG	2 cut(s)	419, 576
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	16, 474, 483, 553, 738
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	166, 269, 368, 749
HpaII	CCGG	2 cut(s)	419, 576
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	7 cut(s)	51, 136, 171, 238, 300, 333, 385
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	161, 440
HpyCH4III	ACNGT	3 cut(s)	286, 339, 760
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	2 cut(s)	615, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	279, 384
HpySE526I	ACGT	1 cut(s)	707
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	16, 474, 483, 553, 738
HspAI	GCGC	1 cut(s)	246
KasI	GGCGCC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	33, 72, 328, 592, 688
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	8 cut(s)	189, 216, 228, 432, 516, 589, 627, 759
Lsp1109I	GCAGC	2 cut(s)	517, 718
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	5 cut(s)	35, 74, 330, 594, 690
MboI	GATC	5 cut(s)	33, 72, 328, 592, 688
MflI	RGATCY	3 cut(s)	72, 328, 688
MluCI	AATT	1 cut(s)	604
Mly113I	GGCGCC	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	159, 232
MnlI	CCTC	8 cut(s)	52, 91, 142, 187, 238, 248, 379, 387
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	3 cut(s)	207, 315, 684
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	2 cut(s)	419, 576
MspR9I	CCNGG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	185
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	419
NcoI	CCATGG	2 cut(s)	12, 470
NdeII	GATC	5 cut(s)	33, 72, 328, 592, 688
NlaIII	CATG	5 cut(s)	16, 474, 483, 553, 738
NlaIV	GGNNCC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	4 cut(s)	166, 269, 368, 749
PkrI	GCNGC	2 cut(s)	532, 733
PluTI	GGCGCC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	247
PsrI	GAACNNNNNNTAC	4 cut(s)	183, 215, 630, 662
PsuI	RGATCY	3 cut(s)	72, 328, 688
RsaI	GTAC	2 cut(s)	145, 277
RsaNI	GTAC	2 cut(s)	144, 276
SaqAI	TTAA	3 cut(s)	207, 315, 684
SatI	GCNGC	2 cut(s)	531, 732
Sau3AI	GATC	5 cut(s)	33, 72, 328, 592, 688
ScaI	AGTACT	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	419
SfcI	CTRYAG	2 cut(s)	189, 636
SfoI	GGCGCC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	1 cut(s)	604
SsiI	CCGC	2 cut(s)	29, 231
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	12, 470
TaaI	ACNGT	3 cut(s)	286, 339, 760
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	5 cut(s)	272, 342, 453, 461, 696
TasI	AATT	1 cut(s)	604
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	4 cut(s)	166, 269, 368, 749
Tru1I	TTAA	3 cut(s)	207, 315, 684
Tru9I	TTAA	3 cut(s)	207, 315, 684
TseI	GCWGC	2 cut(s)	530, 731
TspDTI	ATGAA	5 cut(s)	500, 538, 643, 681, 741
TspGWI	ACGGA	2 cut(s)	106, 647
Vha464I	CTTAAG	1 cut(s)	683
XapI	RAATTY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.