Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

4545384 .. 4547147

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCCATTTCCATGACCTTGTTTTCTCCCACAACCCATCTCCCAACCTTCTCTCCTTCCTCCTCATCACACTTCAAACCCCTCCTGACCCACAAGCCTTATCTCTCTCTCAGACCCAAGAACCTCCACAGAGCCTCAGCTGAGAATGGAGCTGGAAGCTCAGCTGCCACTACCGTGGAGCCCAAAGCAGAGCCCGATGTCCCGGAACCCGGCGCCAAGGCGGTTCTTGAGAGCTCTGCTGGGGCTAACGGGTCAGCTGGACCAGCTGAGGAGGTGACGGTGGGGAATTTGTTTGCAGATGGGAGATGGGTCAATGGGACTTGGGATTTGAAGCAGTTTGAGAAAAGTGGCAAAACTGACTGGGATGCTGTTATTGATGCTGAGGCCAGGAGGAGAAAATGGCTCCAGGACAACCCGGAATCATCCAGTAATGAGAACCCTGTGTTTTTTGACACCTCCATTGTACCTTGGTGGGCATGGATAAAGAGATACCATTTACCTGAAGCTGAACTACTTAACGGACGTGCCGCTATGATAGGTTTTTTCATGGCGTATTTTGTTGATAGCTTGACCGGCGTTGGCCTAGTTGACCAAATGGGCAATTTCTTATGCAAAACATTGTTGTTTGTAGCTGTTGGGGGAGTGCTTCTGATCCGCAAGAACGAGGATGTTGAAAACCTAAAGAAACTACTCGAAGAGACGACGTTTTATGATAAGCAATGGCAAGCAACCTGGCAGGACGAGACCCCGGCTAGCAGTAGCAAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

258

Amino Acids

28.38

Weight (kDa)

5.61

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	3 cut(s)	221, 528, 655
AclWI	GGATC	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	76, 331, 674
AjiI	CACGTC	1 cut(s)	524
AjnI	CCWGG	3 cut(s)	386, 405, 731
AleI	CACNNNNGTG	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	2 cut(s)	692, 737
AlwI	GGATC	1 cut(s)	646
AoxI	GGCC	2 cut(s)	384, 580
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	4 cut(s)	203, 210, 416, 749
AsuHPI	GGTGA	1 cut(s)	286
AsuNHI	GCTAGC	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	3 cut(s)	183, 195, 236
BarI	GAAGNNNNNNTAC	2 cut(s)	495, 527
Bbv12I	GWGCWC	1 cut(s)	236
BbvCI	CCTCAGC	3 cut(s)	136, 267, 381
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	3 cut(s)	45, 293, 300
BciT130I	CCWGG	3 cut(s)	388, 407, 733
BcnI	CCSGG	4 cut(s)	203, 210, 416, 749
BcoDI	GTCTC	2 cut(s)	692, 737
BfaI	CTAG	2 cut(s)	584, 753
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	2 cut(s)	165, 528
BlpI	GCTNAGC	1 cut(s)	160
BlsI	GCNGC	2 cut(s)	166, 529
Bme1390I	CCNGG	7 cut(s)	203, 210, 388, 407, 416, 733, 749
Bme18I	GGWCC	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	4 cut(s)	180, 207, 214, 404
BmrFI	CCNGG	7 cut(s)	203, 210, 388, 407, 416, 733, 749
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	355, 367
BmtI	GCTAGC	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	3 cut(s)	136, 267, 381
Bpu1102I	GCTNAGC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	4 cut(s)	203, 210, 416, 749
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	174, 216, 467, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	365, 426
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	3 cut(s)	388, 407, 733
BseDI	CCNNGG	4 cut(s)	174, 216, 467, 747
BseGI	GGATG	3 cut(s)	370, 422, 673
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	6 cut(s)	124, 132, 150, 174, 258, 372
BseNI	ACTGG	2 cut(s)	365, 426
BseRI	GAGGAG	3 cut(s)	52, 284, 406
BseXI	GCAGC	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	2 cut(s)	386, 582
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	5 cut(s)	203, 210, 416, 573, 749
BslFI	GGGAC	2 cut(s)	185, 331
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	692, 737
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	2 cut(s)	185, 331
BsnI	GGCC	2 cut(s)	386, 582
Bso31I	GGTCTC	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	183, 195, 236
Bsp143I	GATC	1 cut(s)	651
Bsp1720I	GCTNAGC	1 cut(s)	160
BspACI	CCGC	3 cut(s)	221, 528, 655
BspANI	GGCC	2 cut(s)	386, 582
BspCNI	CTCAG	6 cut(s)	123, 133, 149, 173, 259, 373
BspLI	GGNNCC	4 cut(s)	180, 207, 214, 404
BspOI	GCTAGC	1 cut(s)	756
BspPI	GGATC	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	725
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	365, 426
BssAI	RCCGGY	1 cut(s)	572
BssECI	CCNNGG	4 cut(s)	174, 216, 467, 747
BssMI	GATC	1 cut(s)	651
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	216, 467
Bst2UI	CCWGG	3 cut(s)	388, 407, 733
Bst4CI	ACNGT	2 cut(s)	175, 280
Bst6I	CTCTTC	1 cut(s)	690
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	726, 754
BstDEI	CTNAG	6 cut(s)	110, 136, 141, 160, 267, 381
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	370, 422, 673
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	654
BstMAI	GTCTC	2 cut(s)	692, 737
BstMBI	GATC	1 cut(s)	651
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 573
BstNI	CCWGG	3 cut(s)	388, 407, 733
BstSCI	CCNGG	7 cut(s)	201, 208, 386, 405, 414, 731, 747
BstV1I	GCAGC	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	386, 582
BtgI	CCRYGG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	3 cut(s)	370, 422, 673
Cac8I	GCNNGC	2 cut(s)	726, 754
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	3 cut(s)	13, 477, 547
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	6 cut(s)	110, 136, 141, 160, 267, 381
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	1 cut(s)	653
DpnII	GATC	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	216, 467
Eco24I	GRGCYC	3 cut(s)	183, 195, 236
Eco31I	GGTCTC	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	234
EcoRII	CCWGG	3 cut(s)	386, 405, 731
EcoT14I	CCWWGG	2 cut(s)	216, 467
EcoT38I	GRGCYC	3 cut(s)	183, 195, 236
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	216, 467
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	3 cut(s)	16, 480, 550
FaiI	YATR	6 cut(s)	14, 478, 533, 548, 610, 711
FaqI	GGGAC	2 cut(s)	185, 331
FatI	CATG	3 cut(s)	12, 476, 546
Fnu4HI	GCNGC	2 cut(s)	165, 528
FokI	GGATG	3 cut(s)	377, 409, 680
FriOI	GRGCYC	3 cut(s)	183, 195, 236
Fsp4HI	GCNGC	2 cut(s)	165, 528
FspBI	CTAG	2 cut(s)	584, 753
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	165, 528
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	386, 582
HapII	CCGG	5 cut(s)	203, 210, 416, 573, 749
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	16, 480, 550
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	5 cut(s)	203, 210, 416, 573, 749
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	113, 651
Hpy188III	TCNNGA	2 cut(s)	85, 227
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	2 cut(s)	58, 66
HpyCH4III	ACNGT	2 cut(s)	175, 280
HpyCH4IV	ACGT	2 cut(s)	523, 704
HpyCH4V	TGCA	2 cut(s)	296, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 573
HpyF3I	CTNAG	6 cut(s)	110, 136, 141, 160, 267, 381
HpySE526I	ACGT	2 cut(s)	523, 704
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	16, 480, 550
HspAI	GCGC	1 cut(s)	213
KasI	GGCGCC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	651
LmnI	GCTCC	3 cut(s)	149, 178, 408
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	355, 367
MaeI	CTAG	2 cut(s)	584, 753
MaeII	ACGT	2 cut(s)	523, 704
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	653
MboI	GATC	1 cut(s)	651
MboII	GAAGA	1 cut(s)	707
MhlI	GDGCHC	3 cut(s)	183, 195, 236
MluCI	AATT	2 cut(s)	286, 601
Mly113I	GGCGCC	1 cut(s)	213
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	2 cut(s)	11, 173
MspA1I	CMGCKG	4 cut(s)	140, 164, 257, 266
MspI	CCGG	5 cut(s)	203, 210, 416, 573, 749
MspR9I	CCNGG	7 cut(s)	203, 210, 388, 407, 416, 733, 749
MvaI	CCWGG	3 cut(s)	388, 407, 733
MwoI	GCNNNNNNNGC	2 cut(s)	263, 573
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	4 cut(s)	203, 210, 416, 749
NdeII	GATC	1 cut(s)	651
NheI	GCTAGC	1 cut(s)	752
NlaIII	CATG	3 cut(s)	16, 480, 550
NlaIV	GGNNCC	4 cut(s)	180, 207, 214, 404
NmuCI	GTSAC	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	2 cut(s)	201, 405
PkrI	GCNGC	2 cut(s)	166, 529
PluTI	GGCGCC	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	386, 405, 731
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	3 cut(s)	386, 405, 731
PspN4I	GGNNCC	4 cut(s)	180, 207, 214, 404
PspPI	GGNCC	1 cut(s)	260
PvuII	CAGCTG	4 cut(s)	140, 164, 257, 266
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	2 cut(s)	11, 173
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	165, 528
Sau3AI	GATC	1 cut(s)	651
Sau96I	GGNCC	1 cut(s)	260
ScrFI	CCNGG	7 cut(s)	203, 210, 388, 407, 416, 733, 749
SduI	GDGCHC	3 cut(s)	183, 195, 236
SfaNI	GCATC	2 cut(s)	355, 367
SfoI	GGCGCC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	11, 173
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	286, 601
SsiI	CCGC	3 cut(s)	221, 528, 655
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	584, 753
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	7 cut(s)	201, 208, 386, 405, 414, 731, 747
StyI	CCWWGG	2 cut(s)	216, 467
TaaI	ACNGT	2 cut(s)	175, 280
TaiI	ACGT	2 cut(s)	526, 707
TaqI	TCGA	1 cut(s)	693
TasI	AATT	2 cut(s)	286, 601
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	535
TspGWI	ACGGA	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	2 cut(s)	584, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.