Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

46219835 .. 46221792

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCCATTTCCATGTCCTTGTTCTCTCCGTCAACCCATCTCCCAACTCTCTCTCCCTCCTCCTCCTCCTCATACCCAAAACCCCATTTCACCCTCAAGCCTTGTCTCTCTCTCAGACCCAAGACCCCTCTCTTCACCACCAGAGCCTCAGCTGAAAATGGTGCAGGAGCTGCTGCTGCCACAGCTGTGGAGGCGGAGCCCAAGGTCCCCGAGCCGGTTGCGGCCAAGAGTGAGAGCTCTAATGGGTCAGCTGGGCCGGCTGTGGAGGAGGTGAAGGTGGTCAGTTTGTTTGAGGACGCCAGATGGGTCAATGGGACTTGGGACTTGAAGCAGTTTGAGAAAAGTGGCAAGACTGACTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGAAAATGGCTCCAGGATAACCCAGAATCGTCCAGTAATGATAACCCTATACTTTTCGACACCTCAATTGTACCTTGGTGGGCATGGGTAAAGAGATACCATTTACCTGAAGCTGAGCTACTCAATGGTCGTGCTGCCATGGTAGGTTTCTTCAGTGCTTATCTGGTTGATAGCTTGACTGGAGTGGGCCTAGTTGATCAAATGGGCAATTTCATCTGCAAAACATTACTGTTCGTAGCTGTGGCGGGAGTACTTCTGATCCGCAAGAACGAGGATGTTGAAAAACTAAAGAAACTGCTGGATGAGACAACGTTTTACGACAAGCAATGGCAGGCAACCTGGCAGGATGAGACTCCTGGCAATCCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

253

Amino Acids

27.88

Weight (kDa)

5.52

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	194, 221, 635, 652
AclI	AACGTT	1 cut(s)	701
AclWI	GGATC	1 cut(s)	643
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	2 cut(s)	519, 526
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	462, 642
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	328, 671
AjnI	CCWGG	3 cut(s)	402, 728, 745
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	9 cut(s)	152, 170, 185, 237, 251, 503, 508, 564, 629
AluI	AGCT	9 cut(s)	152, 170, 185, 237, 251, 503, 508, 564, 629
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	3 cut(s)	110, 689, 734
AlwI	GGATC	1 cut(s)	643
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	222, 254, 577
ApeKI	GCWGC	4 cut(s)	170, 173, 176, 524
AspS9I	GGNCC	3 cut(s)	205, 254, 577
AsuHPI	GGTGA	3 cut(s)	82, 127, 283
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	2 cut(s)	201, 239
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
Bbv12I	GWGCWC	1 cut(s)	239
BbvCI	CCTCAGC	2 cut(s)	148, 378
BbvI	GCAGC	4 cut(s)	157, 160, 163, 511
BccI	CCATC	2 cut(s)	45, 297
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	3 cut(s)	404, 730, 747
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	3 cut(s)	110, 689, 734
BfaI	CTAG	2 cut(s)	384, 581
BisI	GCNGC	5 cut(s)	171, 174, 177, 222, 525
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	5 cut(s)	172, 175, 178, 223, 526
BmcAI	AGTACT	1 cut(s)	642
Bme1390I	CCNGG	3 cut(s)	404, 730, 747
Bme18I	GGWCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	205, 254, 577
BmiI	GGNNCC	3 cut(s)	198, 207, 401
BmrFI	CCNGG	3 cut(s)	404, 730, 747
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	352, 364
BmuI	ACTGGG	1 cut(s)	367
BpmI	CTGGAG	2 cut(s)	386, 591
Bpu10I	CCTNAGC	2 cut(s)	148, 378
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	201, 464, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	2 cut(s)	214, 256
Bse1I	ACTGG	3 cut(s)	362, 423, 574
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	3 cut(s)	404, 730, 747
BseDI	CCNNGG	3 cut(s)	201, 464, 528
BseGI	GGATG	4 cut(s)	367, 670, 697, 742
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	127, 162, 369, 495
BseNI	ACTGG	3 cut(s)	362, 423, 574
BseRI	GAGGAG	6 cut(s)	49, 52, 55, 58, 281, 403
BseXI	GCAGC	4 cut(s)	157, 160, 163, 511
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	224, 256, 579
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	215, 257
BslFI	GGGAC	3 cut(s)	191, 328, 335
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	3 cut(s)	110, 689, 734
BsmFI	GGGAC	3 cut(s)	191, 328, 335
BsnI	GGCC	3 cut(s)	224, 256, 579
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	201, 239
Bsp143I	GATC	2 cut(s)	586, 648
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	4 cut(s)	194, 221, 635, 652
BspANI	GGCC	3 cut(s)	224, 256, 579
BspCNI	CTCAG	4 cut(s)	126, 161, 370, 496
BspLI	GGNNCC	3 cut(s)	198, 207, 401
BspPI	GGATC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	722
BsrFI	RCCGGY	2 cut(s)	214, 256
BsrI	ACTGG	3 cut(s)	362, 423, 574
BssAI	RCCGGY	2 cut(s)	214, 256
BssECI	CCNNGG	3 cut(s)	201, 464, 528
BssMI	GATC	2 cut(s)	586, 648
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	3 cut(s)	201, 464, 528
Bst2UI	CCWGG	3 cut(s)	404, 730, 747
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	258, 723
BstDEI	CTNAG	4 cut(s)	113, 148, 378, 504
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	367, 670, 697, 742
BstKTI	GATC	2 cut(s)	589, 651
BstMAI	GTCTC	3 cut(s)	110, 689, 734
BstMBI	GATC	2 cut(s)	586, 648
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 176, 182, 191, 257
BstNI	CCWGG	3 cut(s)	404, 730, 747
BstSCI	CCNGG	3 cut(s)	402, 728, 745
BstV1I	GCAGC	4 cut(s)	157, 160, 163, 511
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	224, 256, 579
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	4 cut(s)	367, 670, 697, 742
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	258, 723
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	2 cut(s)	214, 256
Cfr13I	GGNCC	3 cut(s)	205, 254, 577
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	461, 641
CviAII	CATG	3 cut(s)	13, 474, 529
CviQI	GTAC	2 cut(s)	461, 641
DdeI	CTNAG	4 cut(s)	113, 148, 378, 504
DpnI	GATC	2 cut(s)	588, 650
DpnII	GATC	2 cut(s)	586, 648
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	3 cut(s)	201, 464, 528
Eco24I	GRGCYC	2 cut(s)	201, 239
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	519, 526
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	3 cut(s)	402, 728, 745
EcoT14I	CCWWGG	3 cut(s)	201, 464, 528
EcoT38I	GRGCYC	2 cut(s)	201, 239
ErhI	CCWWGG	3 cut(s)	201, 464, 528
FaeI	CATG	3 cut(s)	16, 477, 532
FaiI	YATR	5 cut(s)	14, 73, 440, 475, 530
FaqI	GGGAC	3 cut(s)	191, 328, 335
FatI	CATG	3 cut(s)	12, 473, 528
FauI	CCCGC	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	5 cut(s)	171, 174, 177, 222, 525
FokI	GGATG	4 cut(s)	374, 677, 704, 749
FriOI	GRGCYC	2 cut(s)	201, 239
Fsp4HI	GCNGC	5 cut(s)	171, 174, 177, 222, 525
FspBI	CTAG	2 cut(s)	384, 581
GluI	GCNGC	5 cut(s)	171, 174, 177, 222, 525
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	386, 591
HaeIII	GGCC	3 cut(s)	224, 256, 579
HapII	CCGG	2 cut(s)	215, 257
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	16, 477, 532
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	416, 742
HpaII	CCGG	2 cut(s)	215, 257
HphI	GGTGA	3 cut(s)	82, 127, 283
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	116, 648
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	2 cut(s)	164, 609
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 176, 182, 191, 257
HpyF3I	CTNAG	4 cut(s)	113, 148, 378, 504
HpySE526I	ACGT	1 cut(s)	701
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	16, 477, 532
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	586, 648
LmnI	GCTCC	3 cut(s)	167, 196, 405
Lsp1109I	GCAGC	4 cut(s)	157, 160, 163, 511
LweI	GCATC	2 cut(s)	352, 364
MaeI	CTAG	2 cut(s)	384, 581
MaeII	ACGT	1 cut(s)	701
MalI	GATC	2 cut(s)	588, 650
MboI	GATC	2 cut(s)	586, 648
MboII	GAAGA	2 cut(s)	124, 532
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	201, 239
MluCI	AATT	2 cut(s)	456, 598
MlyI	GAGTC	1 cut(s)	736
MroNI	GCCGGC	1 cut(s)	256
MslI	CAYNNNNRTG	2 cut(s)	11, 185
MspA1I	CMGCKG	3 cut(s)	152, 185, 251
MspI	CCGG	2 cut(s)	215, 257
MspR9I	CCNGG	3 cut(s)	404, 730, 747
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	3 cut(s)	404, 730, 747
MwoI	GCNNNNNNNGC	5 cut(s)	170, 176, 182, 191, 257
NaeI	GCCGGC	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	586, 648
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	16, 477, 532
NlaIV	GGNNCC	3 cut(s)	198, 207, 401
OliI	CACNNNNGTG	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	172, 175, 178, 223, 526
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	3 cut(s)	402, 728, 745
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	402, 728, 745
PspN4I	GGNNCC	3 cut(s)	198, 207, 401
PspPI	GGNCC	3 cut(s)	205, 254, 577
PspPPI	RGGWCCY	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	170
PvuII	CAGCTG	3 cut(s)	152, 185, 251
RsaI	GTAC	2 cut(s)	462, 642
RsaNI	GTAC	2 cut(s)	461, 641
RseI	CAYNNNNRTG	2 cut(s)	11, 185
SacI	GAGCTC	1 cut(s)	239
SatI	GCNGC	5 cut(s)	171, 174, 177, 222, 525
Sau3AI	GATC	2 cut(s)	586, 648
Sau96I	GGNCC	3 cut(s)	205, 254, 577
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	3 cut(s)	404, 730, 747
SduI	GDGCHC	2 cut(s)	201, 239
SfaNI	GCATC	2 cut(s)	352, 364
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	11, 185
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	456, 598
SsiI	CCGC	4 cut(s)	194, 221, 635, 652
SspMI	CTAG	2 cut(s)	384, 581
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	402, 728, 745
StyI	CCWWGG	3 cut(s)	201, 464, 528
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	1 cut(s)	447
TasI	AATT	2 cut(s)	456, 598
TatI	WGTACW	1 cut(s)	640
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	416
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	4 cut(s)	170, 173, 176, 524
TspDTI	ATGAA	1 cut(s)	592
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	205
XspI	CTAG	2 cut(s)	384, 581
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.