Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Forward (+)

22561133 .. 22563310

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG228800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCCATTTCCATGTCCTTGTTCTCTCCGTCAACCCATCTCCCAACTCTCTCTCCCTCCTCCTCATACCCAAAACCCCATTTCACCCTCAAGCCTTGTCTCTCTCTCAGACCCAAGACCCCTCTCTTCACCACCAGAGCCTCAGCTGAAAATGGTGCAGGAGCTGCTGCTGCTGCCACAGCTGTGGAGGCAGAGCCCAAGGTCCCCGAGCCGGTTGCGGCCAAGAGTGAGAGCTCTAATGGGTCAGCTGGGCCGGCTGAGGAGGAGGTGAAGGTGGTCAGTTTGTTTGAGGACGCCAGATGGGTCAATGGGACTTGGGACTTGAAGCAGTTTGAGAAAAGTGGCAAGACTGACTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGAAAATGGCTCCAGGATAACCCAGAATCGTCCAGTAATGATAACCCTATACTTTTCGACACCTCAATTGTACCTTGGTGGGCATGGGTAAAGAGATACCATTTACCTGAAGCTGAGCTACTCAATGGTTTGTTCAGATCCACTTTTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

180

Amino Acids

19.8

Weight (kDa)

5.66

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	519
AcoI	YGGCCR	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	399
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	7 cut(s)	146, 164, 182, 234, 248, 500, 505
AluI	AGCT	7 cut(s)	146, 164, 182, 234, 248, 500, 505
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	519
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	219, 251
ApeKI	GCWGC	4 cut(s)	164, 167, 170, 173
AspS9I	GGNCC	2 cut(s)	202, 251
AsuHPI	GGTGA	3 cut(s)	76, 121, 280
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	198, 236
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
Bbv12I	GWGCWC	1 cut(s)	236
BbvCI	CCTCAGC	3 cut(s)	142, 258, 375
BbvI	GCAGC	4 cut(s)	151, 154, 157, 160
BccI	CCATC	2 cut(s)	45, 294
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	5 cut(s)	165, 168, 171, 174, 219
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	5 cut(s)	166, 169, 172, 175, 220
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	202, 251
BmiI	GGNNCC	2 cut(s)	204, 398
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	349, 361
BmuI	ACTGGG	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	383
Bpu10I	CCTNAGC	3 cut(s)	142, 258, 375
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	198, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	2 cut(s)	211, 253
Bse1I	ACTGG	2 cut(s)	359, 420
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	198, 461
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	5 cut(s)	121, 156, 249, 366, 492
BseNI	ACTGG	2 cut(s)	359, 420
BseRI	GAGGAG	5 cut(s)	49, 52, 275, 278, 400
BseXI	GCAGC	4 cut(s)	151, 154, 157, 160
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	221, 253
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	212, 254
BslFI	GGGAC	3 cut(s)	188, 325, 332
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	3 cut(s)	188, 325, 332
BsnI	GGCC	2 cut(s)	221, 253
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	198, 236
Bsp143I	GATC	1 cut(s)	524
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	2 cut(s)	221, 253
BspCNI	CTCAG	5 cut(s)	120, 155, 250, 367, 493
BspLI	GGNNCC	2 cut(s)	204, 398
BspPI	GGATC	1 cut(s)	519
BsrFI	RCCGGY	2 cut(s)	211, 253
BsrI	ACTGG	2 cut(s)	359, 420
BssAI	RCCGGY	2 cut(s)	211, 253
BssECI	CCNNGG	2 cut(s)	198, 461
BssMI	GATC	1 cut(s)	524
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	198, 461
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	5 cut(s)	107, 142, 258, 375, 501
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	1 cut(s)	527
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 170, 173, 179, 188, 254
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	4 cut(s)	151, 154, 157, 160
BstX2I	RGATCY	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	221, 253
BtsCI	GGATG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	211, 253
Cfr13I	GGNCC	2 cut(s)	202, 251
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	2 cut(s)	13, 471
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	5 cut(s)	107, 142, 258, 375, 501
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	198, 461
Eco24I	GRGCYC	2 cut(s)	198, 236
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	198, 461
EcoT38I	GRGCYC	2 cut(s)	198, 236
ErhI	CCWWGG	2 cut(s)	198, 461
FaeI	CATG	2 cut(s)	16, 474
FaiI	YATR	6 cut(s)	14, 67, 437, 472, 539, 541
FaqI	GGGAC	3 cut(s)	188, 325, 332
FatI	CATG	2 cut(s)	12, 470
Fnu4HI	GCNGC	5 cut(s)	165, 168, 171, 174, 219
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	2 cut(s)	198, 236
Fsp4HI	GCNGC	5 cut(s)	165, 168, 171, 174, 219
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	5 cut(s)	165, 168, 171, 174, 219
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	221, 253
HapII	CCGG	2 cut(s)	212, 254
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	16, 474
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	2 cut(s)	212, 254
HphI	GGTGA	3 cut(s)	76, 121, 280
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	110, 524
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 170, 173, 179, 188, 254
HpyF3I	CTNAG	5 cut(s)	107, 142, 258, 375, 501
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	16, 474
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	524
LmnI	GCTCC	2 cut(s)	161, 402
Lsp1109I	GCAGC	4 cut(s)	151, 154, 157, 160
LweI	GCATC	2 cut(s)	349, 361
MaeI	CTAG	1 cut(s)	381
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	1 cut(s)	118
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	198, 236
MluCI	AATT	1 cut(s)	453
MroNI	GCCGGC	1 cut(s)	253
MslI	CAYNNNNRTG	2 cut(s)	11, 182
MspA1I	CMGCKG	3 cut(s)	146, 182, 248
MspI	CCGG	2 cut(s)	212, 254
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	6 cut(s)	164, 170, 173, 179, 188, 254
NaeI	GCCGGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	524
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	16, 474
NlaIV	GGNNCC	2 cut(s)	204, 398
OliI	CACNNNNGTG	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	5 cut(s)	166, 169, 172, 175, 220
PpuMI	RGGWCCY	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	204, 398
PspPI	GGNCC	2 cut(s)	202, 251
PspPPI	RGGWCCY	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	3 cut(s)	146, 182, 248
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	2 cut(s)	11, 182
SacI	GAGCTC	1 cut(s)	236
SatI	GCNGC	5 cut(s)	165, 168, 171, 174, 219
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	2 cut(s)	202, 251
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	198, 236
SfaNI	GCATC	2 cut(s)	349, 361
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	11, 182
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	198, 461
TaqI	TCGA	1 cut(s)	444
TasI	AATT	1 cut(s)	453
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	413
TseI	GCWGC	4 cut(s)	164, 167, 170, 173
TspGWI	ACGGA	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	202
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.