Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Forward (+)

18606300 .. 18608436

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG217800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCATTTCCATGTCCTTGTTCTCTCCGTCAACCCATCTCTCAACTCTCTCTCCCTCCTCCTCATACCCAAAACCCCATTTCACCCTCAAGCCTTGTCTCTCTCTCAGACCCAAGACCCCTCTCTTCACCACCAGAGCCTCAGCTGAAAATGGTGCAGGAGCTGCTGCCACAGTTGTGGAGGCAGAGCCCAAGGTCCCCGAGCCGGTTGCGGCCAAGAATGAGAGCTCTAATGGGTCAGCTGGGCCGGCTGAGGAGGAGGTGAAGGTGGTCAGTTTGTTTGAGGACGCCAGATGGGTCAATGGGACTTGGGACTTGAAGCAGTTTGAGAAAAGTGGCAAGACTGACTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGAAAATGGCTCCAGGATAACCCAGAATCGTCCAGTAATGATAACCCTATACTTTTCGACACCTCAATTGTACCTTGGTGGGCATGGGTAAAGAGATACCATTTACCTGAAGCTGAGCTACTCAATGGTTTGTTCAGATCCACTTATGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

178

Amino Acids

19.72

Weight (kDa)

5.66

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	393
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	6 cut(s)	146, 164, 228, 242, 494, 499
AluI	AGCT	6 cut(s)	146, 164, 228, 242, 494, 499
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	213, 245
ApeKI	GCWGC	2 cut(s)	164, 167
AspS9I	GGNCC	2 cut(s)	196, 245
AsuHPI	GGTGA	3 cut(s)	76, 121, 274
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	192, 230
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
Bbv12I	GWGCWC	1 cut(s)	230
BbvCI	CCTCAGC	3 cut(s)	142, 252, 369
BbvI	GCAGC	2 cut(s)	151, 154
BccI	CCATC	2 cut(s)	45, 288
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	375
BisI	GCNGC	3 cut(s)	165, 168, 213
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	3 cut(s)	166, 169, 214
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	196, 245
BmiI	GGNNCC	2 cut(s)	198, 392
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	2 cut(s)	343, 355
BmuI	ACTGGG	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	3 cut(s)	142, 252, 369
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	192, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	2 cut(s)	205, 247
Bse1I	ACTGG	2 cut(s)	353, 414
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	192, 455
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	5 cut(s)	121, 156, 243, 360, 486
BseNI	ACTGG	2 cut(s)	353, 414
BseRI	GAGGAG	5 cut(s)	49, 52, 269, 272, 394
BseXI	GCAGC	2 cut(s)	151, 154
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	215, 247
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	206, 248
BslFI	GGGAC	3 cut(s)	182, 319, 326
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	3 cut(s)	182, 319, 326
BsnI	GGCC	2 cut(s)	215, 247
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	192, 230
Bsp143I	GATC	1 cut(s)	518
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	215, 247
BspCNI	CTCAG	5 cut(s)	120, 155, 244, 361, 487
BspLI	GGNNCC	2 cut(s)	198, 392
BspPI	GGATC	1 cut(s)	513
BsrFI	RCCGGY	2 cut(s)	205, 247
BsrI	ACTGG	2 cut(s)	353, 414
BssAI	RCCGGY	2 cut(s)	205, 247
BssECI	CCNNGG	2 cut(s)	192, 455
BssMI	GATC	1 cut(s)	518
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	192, 455
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	5 cut(s)	107, 142, 252, 369, 495
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 248
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	151, 154
BstX2I	RGATCY	1 cut(s)	518
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	215, 247
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	205, 247
Cfr13I	GGNCC	2 cut(s)	196, 245
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	2 cut(s)	13, 465
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	5 cut(s)	107, 142, 252, 369, 495
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	192, 455
Eco24I	GRGCYC	2 cut(s)	192, 230
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	192, 455
EcoT38I	GRGCYC	2 cut(s)	192, 230
ErhI	CCWWGG	2 cut(s)	192, 455
FaeI	CATG	2 cut(s)	16, 468
FaiI	YATR	5 cut(s)	14, 67, 431, 466, 528
FaqI	GGGAC	3 cut(s)	182, 319, 326
FatI	CATG	2 cut(s)	12, 464
Fnu4HI	GCNGC	3 cut(s)	165, 168, 213
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	2 cut(s)	192, 230
Fsp4HI	GCNGC	3 cut(s)	165, 168, 213
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	3 cut(s)	165, 168, 213
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	215, 247
HapII	CCGG	2 cut(s)	206, 248
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	16, 468
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	206, 248
HphI	GGTGA	3 cut(s)	76, 121, 274
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	110, 518
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 248
HpyF3I	CTNAG	5 cut(s)	107, 142, 252, 369, 495
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	16, 468
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	518
LmnI	GCTCC	2 cut(s)	161, 396
Lsp1109I	GCAGC	2 cut(s)	151, 154
LweI	GCATC	2 cut(s)	343, 355
MaeI	CTAG	1 cut(s)	375
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	1 cut(s)	118
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	192, 230
MluCI	AATT	1 cut(s)	447
MroNI	GCCGGC	1 cut(s)	247
MslI	CAYNNNNRTG	2 cut(s)	11, 176
MspA1I	CMGCKG	2 cut(s)	146, 242
MspI	CCGG	2 cut(s)	206, 248
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	164, 248
NaeI	GCCGGC	1 cut(s)	249
NdeII	GATC	1 cut(s)	518
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	16, 468
NlaIV	GGNNCC	2 cut(s)	198, 392
OliI	CACNNNNGTG	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	166, 169, 214
PpuMI	RGGWCCY	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	198, 392
PspPI	GGNCC	2 cut(s)	196, 245
PspPPI	RGGWCCY	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	518
PvuII	CAGCTG	2 cut(s)	146, 242
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	2 cut(s)	11, 176
SacI	GAGCTC	1 cut(s)	230
SatI	GCNGC	3 cut(s)	165, 168, 213
Sau3AI	GATC	1 cut(s)	518
Sau96I	GGNCC	2 cut(s)	196, 245
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	192, 230
SfaNI	GCATC	2 cut(s)	343, 355
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	11, 176
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	192, 455
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	447
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	164, 167
TspGWI	ACGGA	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	196
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.