Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

6161810 .. 6164118

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCCATTTCCATGGCCTTGTTTTCTCCCACAACCCACATCCCAACCCTCTCTCCCTCTTCATCTTACTCCAAACCCAACTTGATCCACAAGCCTTATCTCTCTCTCAGACCCAAGAACCCTCTCTTCACCGCCAGAGCTTCAGCTGAAAATGGAGCAGGAGCTCTCGCCTCAGCTGCCACTGCTGTGAAGTCAGAAGCAGAGCCCAAGGTCCCCGAACCCGTCGAGCCTGTTCCGGTGAAGACTGAGAGTTCTGCTGGGGCTAATGGGTCAGCTGCTGCACCGGCTGAGGAGGTGAAGGTGGTCGGCTTGTTTGAGGACAGCAGATGGGTCAATGGGACTTGGGATTTGAAACAGTTTGAGAAAAGTGGCAAAACTGACTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGAAAATGGCTACAGGACAACCCGGAATCTTCCAGTAATGAGAACCCTGTATTCTTTGATACCTCCATTGTACCTTGGTGGGCATGGATAAAGAGATACCATTTACCTGAAGCTGAACTACTCAATGGTCGTGCTGCTATGGTAGGATTTTTTATGGCTTATCTGGTTGATAGCTTGACTGGAGTAGGTCTAGTTGACCAAATGGGCAATTTCTTCTGCAAAACATTATTGTTCGTGGCTGTGTCGGGAGTGCTTCTGATCCGCAAAAATGAGGATGTTGAAAACCTAAAGAAGCTACTGGACGAGACAACATTTTATGACAAGCAATGGCAAGCAACCTGGCAGGATGAGACCCCAGCTAGCAGTCCCAAGAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

265

Amino Acids

29.14

Weight (kDa)

5.54

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	132, 676
AclWI	GGATC	2 cut(s)	79, 667
AcuI	CTGAAG	2 cut(s)	126, 543
AfaI	GTAC	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	352, 695
AjnI	CCWGG	1 cut(s)	752
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	9 cut(s)	140, 146, 164, 176, 275, 527, 588, 709, 773
AluI	AGCT	9 cut(s)	140, 146, 164, 176, 275, 527, 588, 709, 773
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	713, 758
AlwI	GGATC	2 cut(s)	79, 667
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	176, 275, 278, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	121, 250, 307
AsuNHI	GCTAGC	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	166, 207
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	3 cut(s)	172, 288, 402
BbvI	GCAGC	4 cut(s)	163, 262, 265, 535
BccI	CCATC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	2 cut(s)	713, 758
BfaI	CTAG	3 cut(s)	408, 605, 774
BfmI	CTRYAG	1 cut(s)	425
BisI	GCNGC	4 cut(s)	177, 276, 279, 549
BlsI	GCNGC	4 cut(s)	178, 277, 280, 550
Bme1390I	CCNGG	2 cut(s)	437, 754
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	437, 754
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	376, 388
BmtI	GCTAGC	1 cut(s)	777
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	3 cut(s)	172, 288, 402
BpuMI	CCSGG	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	758
BsaJI	CCNNGG	3 cut(s)	12, 207, 488
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	4 cut(s)	386, 447, 598, 717
Bse3DI	GCAATG	1 cut(s)	746
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	3 cut(s)	12, 207, 488
BseGI	GGATG	4 cut(s)	39, 391, 694, 766
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	5 cut(s)	121, 186, 237, 279, 393
BseNI	ACTGG	4 cut(s)	386, 447, 598, 717
BseRI	GAGGAG	2 cut(s)	305, 427
BseXI	GCAGC	4 cut(s)	163, 262, 265, 535
BseYI	CCCAGC	2 cut(s)	257, 769
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	236, 284, 437
BslFI	GGGAC	3 cut(s)	197, 352, 765
BsmAI	GTCTC	2 cut(s)	713, 758
BsmFI	GGGAC	3 cut(s)	197, 352, 765
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	758
Bsp1286I	GDGCHC	2 cut(s)	166, 207
Bsp143I	GATC	2 cut(s)	84, 672
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	132, 676
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	5 cut(s)	120, 185, 238, 280, 394
BspLI	GGNNCC	1 cut(s)	213
BspOI	GCTAGC	1 cut(s)	777
BspPI	GGATC	2 cut(s)	79, 667
BspTNI	GGTCTC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	4 cut(s)	386, 447, 598, 717
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	12, 207, 488
BssMI	GATC	2 cut(s)	84, 672
BssT1I	CCWWGG	3 cut(s)	12, 207, 488
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	64, 131
BstC8I	GCNNGC	2 cut(s)	747, 775
BstDEI	CTNAG	5 cut(s)	107, 172, 246, 288, 402
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	39, 391, 694, 766
BstKTI	GATC	2 cut(s)	87, 675
BstMAI	GTCTC	2 cut(s)	713, 758
BstMBI	GATC	2 cut(s)	84, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 182, 284
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	435, 752
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	4 cut(s)	163, 262, 265, 535
BstV2I	GAAGAC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	39, 391, 694, 766
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	747, 775
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	2 cut(s)	13, 498
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	5 cut(s)	107, 172, 246, 288, 402
DpnI	GATC	2 cut(s)	86, 674
DpnII	GATC	2 cut(s)	84, 672
Eam1104I	CTCTTC	2 cut(s)	64, 131
EarI	CTCTTC	2 cut(s)	64, 131
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	3 cut(s)	12, 207, 488
Eco24I	GRGCYC	2 cut(s)	166, 207
Eco31I	GGTCTC	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	126, 543
EcoICRI	GAGCTC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	752
EcoT14I	CCWWGG	3 cut(s)	12, 207, 488
EcoT38I	GRGCYC	2 cut(s)	166, 207
ErhI	CCWWGG	3 cut(s)	12, 207, 488
FaeI	CATG	2 cut(s)	16, 501
FaiI	YATR	5 cut(s)	14, 499, 554, 569, 732
FaqI	GGGAC	3 cut(s)	197, 352, 765
FatI	CATG	2 cut(s)	12, 497
Fnu4HI	GCNGC	4 cut(s)	177, 276, 279, 549
FokI	GGATG	4 cut(s)	26, 398, 701, 773
FriOI	GRGCYC	2 cut(s)	166, 207
Fsp4HI	GCNGC	4 cut(s)	177, 276, 279, 549
FspBI	CTAG	3 cut(s)	408, 605, 774
GluI	GCNGC	4 cut(s)	177, 276, 279, 549
GsaI	CCCAGC	2 cut(s)	261, 773
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	236, 284, 437
Hin1II	CATG	2 cut(s)	16, 501
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	3 cut(s)	236, 284, 437
HphI	GGTGA	3 cut(s)	121, 250, 307
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	3 cut(s)	110, 196, 672
Hpy188III	TCNNGA	1 cut(s)	660
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	281, 633
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 182, 284
HpyF3I	CTNAG	5 cut(s)	107, 172, 246, 288, 402
Hsp92II	CATG	2 cut(s)	16, 501
Kzo9I	GATC	2 cut(s)	84, 672
LmnI	GCTCC	2 cut(s)	155, 161
Lsp1109I	GCAGC	4 cut(s)	163, 262, 265, 535
LweI	GCATC	2 cut(s)	376, 388
MaeI	CTAG	3 cut(s)	408, 605, 774
MalI	GATC	2 cut(s)	86, 674
MboI	GATC	2 cut(s)	84, 672
MboII	GAAGA	5 cut(s)	51, 118, 253, 435, 619
MhlI	GDGCHC	2 cut(s)	166, 207
MluCI	AATT	1 cut(s)	622
MslI	CAYNNNNRTG	2 cut(s)	11, 185
MspA1I	CMGCKG	3 cut(s)	146, 176, 275
MspI	CCGG	3 cut(s)	236, 284, 437
MspR9I	CCNGG	2 cut(s)	437, 754
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	3 cut(s)	176, 182, 284
NciI	CCSGG	1 cut(s)	437
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	84, 672
NheI	GCTAGC	1 cut(s)	773
NlaIII	CATG	2 cut(s)	16, 501
NlaIV	GGNNCC	1 cut(s)	213
OliI	CACNNNNGTG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	178, 277, 280, 550
PpuMI	RGGWCCY	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	2 cut(s)	257, 769
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	3 cut(s)	146, 176, 275
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	2 cut(s)	11, 185
SacI	GAGCTC	1 cut(s)	166
SatI	GCNGC	4 cut(s)	177, 276, 279, 549
Sau3AI	GATC	2 cut(s)	84, 672
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	437, 754
SduI	GDGCHC	2 cut(s)	166, 207
SfaNI	GCATC	2 cut(s)	376, 388
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	11, 185
Sse9I	AATT	1 cut(s)	622
SsiI	CCGC	2 cut(s)	132, 676
SspMI	CTAG	3 cut(s)	408, 605, 774
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	435, 752
StyI	CCWWGG	3 cut(s)	12, 207, 488
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	622
TfiI	GAWTC	1 cut(s)	440
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	4 cut(s)	176, 275, 278, 548
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	211
XspI	CTAG	3 cut(s)	408, 605, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.