Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Forward (+)

12006311 .. 12008367

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCCATTTCCATGGCCTTGTTTTCTCCTTCAACCCATCTCCCTACTCTCTCCCCCTCCTCCTCCTCCTCCTCCTCGTACCCAAAACCCCATTTCACCCTCAAGCCTTGTCTCTCTCTCAGACCCAACAAGGCCACTCTCCCCTTCACCACCAGAGCCTCAGCTGAAAATGGTGCTGGAGCTGCTGCTGCCATAGCTGTGGAGCCAGAGCCCAAGGTGGCTGAGCCGGTTGTGGTGAAGAGTGAGAGCTCTAATGGGTCAGCTGGAGCAGCTGAGGAGGTGAAGGTGGTCAACTTGTTTGAGGACTCCAGATGGGTCAATGGGACTTGGGACTTGAAGCAGTTTGAGAAGAGTGGCAAGACTGACTGGGATGCTGTTATTGATGCTGAGGCTAGGAGAAGAAAATGGCTCCAGGATAACCCAGAATCGTCCAGTAATGATAACCCTGTACTTTTCGACACCTCGATCGTACCTTGGTGGGCATGGGTAAAGAGATACCATTTACCTGAAGCTGAGCTACTCAATGGTCGAGCTGCTATGGTAGGTTTCTTCAGTGCTTATCTGGTTGATAGCTTGACTGGAGTAGGCCTAGTTGATCAAATGGGCAATTTCATCTGCAAAACATTACTGTTTGTAGCTGTGGCGGGAGTGCTTCTGATCCGCAAGAATGAGGATGTTGCAAAACTAAAGAAGCTGCTTGAGGAGACAACGTTTTACGACAAGCAATGGCAAGCAACCTGGCAGGATGAGACTCCTGGCACCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

257

Amino Acids

28.17

Weight (kDa)

6.0

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AciI	CCGC	2 cut(s)	644, 661
AclI	AACGTT	1 cut(s)	710
AclWI	GGATC	1 cut(s)	652
AcuI	CTGAAG	2 cut(s)	528, 535
AfaI	GTAC	3 cut(s)	80, 450, 471
AgsI	TTSAA	2 cut(s)	33, 337
AjnI	CCWGG	3 cut(s)	411, 737, 754
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	3 cut(s)	116, 698, 743
AlwI	GGATC	1 cut(s)	652
AoxI	GGCC	3 cut(s)	15, 132, 586
ApeKI	GCWGC	6 cut(s)	182, 185, 188, 269, 533, 694
AsuHPI	GGTGA	4 cut(s)	88, 139, 247, 292
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	213, 251
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
Bbv12I	GWGCWC	1 cut(s)	251
BbvCI	CCTCAGC	3 cut(s)	160, 273, 387
BbvI	GCAGC	6 cut(s)	169, 172, 175, 281, 520, 681
BccI	CCATC	2 cut(s)	45, 306
BciT130I	CCWGG	3 cut(s)	413, 739, 756
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	116, 698, 743
BfaI	CTAG	2 cut(s)	393, 590
BisI	GCNGC	6 cut(s)	183, 186, 189, 270, 534, 695
BlpI	GCTNAGC	2 cut(s)	222, 513
BlsI	GCNGC	6 cut(s)	184, 187, 190, 271, 535, 696
Bme1390I	CCNGG	3 cut(s)	413, 739, 756
BmiI	GGNNCC	3 cut(s)	204, 410, 760
BmrFI	CCNGG	3 cut(s)	413, 739, 756
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	361, 373
BmuI	ACTGGG	1 cut(s)	376
BpmI	CTGGAG	5 cut(s)	198, 285, 292, 395, 600
Bpu10I	CCTNAGC	3 cut(s)	160, 273, 387
Bpu1102I	GCTNAGC	2 cut(s)	222, 513
BpuEI	CTTGAG	2 cut(s)	86, 719
BsaJI	CCNNGG	3 cut(s)	12, 213, 473
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	371, 432, 583
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	3 cut(s)	413, 739, 756
BseDI	CCNNGG	3 cut(s)	12, 213, 473
BseGI	GGATG	3 cut(s)	376, 679, 751
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	6 cut(s)	133, 174, 213, 264, 378, 504
BseNI	ACTGG	3 cut(s)	371, 432, 583
BseRI	GAGGAG	8 cut(s)	49, 52, 55, 58, 61, 64, 290, 716
BseXI	GCAGC	6 cut(s)	169, 172, 175, 281, 520, 681
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	17, 134, 588
BshNI	GGYRCC	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	2 cut(s)	337, 344
BsmAI	GTCTC	3 cut(s)	116, 698, 743
BsmFI	GGGAC	2 cut(s)	337, 344
BsnI	GGCC	3 cut(s)	17, 134, 588
Bsp1286I	GDGCHC	2 cut(s)	213, 251
Bsp143I	GATC	3 cut(s)	465, 595, 657
Bsp1720I	GCTNAGC	2 cut(s)	222, 513
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	644, 661
BspANI	GGCC	3 cut(s)	17, 134, 588
BspCNI	CTCAG	6 cut(s)	132, 173, 214, 265, 379, 505
BspLI	GGNNCC	3 cut(s)	204, 410, 760
BspPI	GGATC	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	371, 432, 583
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	12, 213, 473
BssMI	GATC	3 cut(s)	465, 595, 657
BssT1I	CCWWGG	3 cut(s)	12, 213, 473
Bst2UI	CCWGG	3 cut(s)	413, 739, 756
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	2 cut(s)	233, 344
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	6 cut(s)	119, 160, 222, 273, 387, 513
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	376, 679, 751
BstKTI	GATC	3 cut(s)	468, 598, 660
BstMAI	GTCTC	3 cut(s)	116, 698, 743
BstMBI	GATC	3 cut(s)	465, 595, 657
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 188, 194, 269
BstNI	CCWGG	3 cut(s)	413, 739, 756
BstSCI	CCNGG	3 cut(s)	411, 737, 754
BstV1I	GCAGC	6 cut(s)	169, 172, 175, 281, 520, 681
BstXI	CCANNNNNNTGG	2 cut(s)	13, 199
BsuRI	GGCC	3 cut(s)	17, 134, 588
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	376, 679, 751
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	79, 449, 470
CviAII	CATG	2 cut(s)	13, 483
CviQI	GTAC	3 cut(s)	79, 449, 470
DdeI	CTNAG	6 cut(s)	119, 160, 222, 273, 387, 513
DpnI	GATC	3 cut(s)	467, 597, 659
DpnII	GATC	3 cut(s)	465, 595, 657
Eam1104I	CTCTTC	2 cut(s)	233, 344
EarI	CTCTTC	2 cut(s)	233, 344
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	3 cut(s)	12, 213, 473
Eco147I	AGGCCT	1 cut(s)	588
Eco24I	GRGCYC	2 cut(s)	213, 251
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	2 cut(s)	528, 535
EcoICRI	GAGCTC	1 cut(s)	249
EcoRII	CCWGG	3 cut(s)	411, 737, 754
EcoT14I	CCWWGG	3 cut(s)	12, 213, 473
EcoT38I	GRGCYC	2 cut(s)	213, 251
ErhI	CCWWGG	3 cut(s)	12, 213, 473
FaeI	CATG	2 cut(s)	16, 486
FaiI	YATR	4 cut(s)	14, 194, 484, 539
FaqI	GGGAC	2 cut(s)	337, 344
FatI	CATG	2 cut(s)	12, 482
FauI	CCCGC	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	6 cut(s)	183, 186, 189, 270, 534, 695
FokI	GGATG	3 cut(s)	383, 686, 758
FriOI	GRGCYC	2 cut(s)	213, 251
Fsp4HI	GCNGC	6 cut(s)	183, 186, 189, 270, 534, 695
FspBI	CTAG	2 cut(s)	393, 590
GluI	GCNGC	6 cut(s)	183, 186, 189, 270, 534, 695
GsuI	CTGGAG	5 cut(s)	198, 285, 292, 395, 600
HaeIII	GGCC	3 cut(s)	17, 134, 588
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	2 cut(s)	16, 486
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	305, 425, 751
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	4 cut(s)	88, 139, 247, 292
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	122, 657
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	3 cut(s)	39, 154, 277
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4IV	ACGT	1 cut(s)	710
HpyCH4V	TGCA	2 cut(s)	618, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 188, 194, 269
HpyF3I	CTNAG	6 cut(s)	119, 160, 222, 273, 387, 513
HpySE526I	ACGT	1 cut(s)	710
Hsp92II	CATG	2 cut(s)	16, 486
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	465, 595, 657
LmnI	GCTCC	4 cut(s)	179, 202, 266, 414
Lsp1109I	GCAGC	6 cut(s)	169, 172, 175, 281, 520, 681
LweI	GCATC	2 cut(s)	361, 373
MaeI	CTAG	2 cut(s)	393, 590
MaeII	ACGT	1 cut(s)	710
MalI	GATC	3 cut(s)	467, 597, 659
MboI	GATC	3 cut(s)	465, 595, 657
MboII	GAAGA	4 cut(s)	250, 361, 411, 541
MhlI	GDGCHC	2 cut(s)	213, 251
MluCI	AATT	1 cut(s)	607
MlyI	GAGTC	2 cut(s)	299, 745
MslI	CAYNNNNRTG	2 cut(s)	11, 197
MspA1I	CMGCKG	3 cut(s)	164, 263, 272
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	413, 739, 756
MvaI	CCWGG	3 cut(s)	413, 739, 756
MwoI	GCNNNNNNNGC	4 cut(s)	182, 188, 194, 269
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	3 cut(s)	465, 595, 657
NlaIII	CATG	2 cut(s)	16, 486
NlaIV	GGNNCC	3 cut(s)	204, 410, 760
PceI	AGGCCT	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	6 cut(s)	184, 187, 190, 271, 535, 696
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	2 cut(s)	299, 745
PpsI	GAGTC	2 cut(s)	299, 745
Psp124BI	GAGCTC	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	411, 737, 754
PspGI	CCWGG	3 cut(s)	411, 737, 754
PspN4I	GGNNCC	3 cut(s)	204, 410, 760
PvuI	CGATCG	1 cut(s)	468
PvuII	CAGCTG	3 cut(s)	164, 263, 272
RsaI	GTAC	3 cut(s)	80, 450, 471
RsaNI	GTAC	3 cut(s)	79, 449, 470
RseI	CAYNNNNRTG	2 cut(s)	11, 197
SacI	GAGCTC	1 cut(s)	251
SatI	GCNGC	6 cut(s)	183, 186, 189, 270, 534, 695
Sau3AI	GATC	3 cut(s)	465, 595, 657
SchI	GAGTC	2 cut(s)	299, 745
ScrFI	CCNGG	3 cut(s)	413, 739, 756
SduI	GDGCHC	2 cut(s)	213, 251
SfaNI	GCATC	2 cut(s)	361, 373
SmiMI	CAYNNNNRTG	2 cut(s)	11, 197
SmlI	CTYRAG	2 cut(s)	101, 698
SmoI	CTYRAG	2 cut(s)	101, 698
Sse9I	AATT	1 cut(s)	607
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	2 cut(s)	644, 661
SspMI	CTAG	2 cut(s)	393, 590
SstI	GAGCTC	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	3 cut(s)	411, 737, 754
StyI	CCWWGG	3 cut(s)	12, 213, 473
TaaI	ACNGT	1 cut(s)	630
TaiI	ACGT	1 cut(s)	713
TaqI	TCGA	3 cut(s)	456, 464, 529
TasI	AATT	1 cut(s)	607
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	425
TscAI	CASTG	1 cut(s)	559
TseI	GCWGC	6 cut(s)	182, 185, 188, 269, 533, 694
TspDTI	ATGAA	1 cut(s)	601
TspRI	CASTG	1 cut(s)	559
XspI	CTAG	2 cut(s)	393, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.