Rorug07G0091800

Lil3 protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
7191654 .. 7193624
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0091800.1

Sequence Viewer

Length: 1395 bp
ATGGGAGGAAAACGAACCAAGAACAAGAAAGGGAAGTTGGAGTTGGACAAATTAAGCAACTTACCAAGTGATGTTACAGAACAAATCTTATCATATTTGCCAATCAGAGATGCAGTGAGGTCAAGTGTTTTATCAAGTAAATGGAGGCACAAATGGGCCACGCTTCGGCGTCTTGTGTTTGATGATAAAACAGCTATACGCTGCGTTATTGAAAGAGTTATCGATCATGTTCTGTTACTTCATGAAGGTCCCGTAGACACTTTCAAGTTGTCTACAGGCAAATATATAAAGACTGCTGAATTTGATAGATGGATTCTTTATCTATCAAGATTCTCTGTCAAAGAGTTCATACTGGAAAAAGGGACTTCCTCTTGCATTGACAATATCTCTTCCCATTTGTTTTCTTATAAAGATTTGACTCACTTGGGGTTAAAAAATTGTTCGCTAAAGCCCCCTTTGACATTCAAAGGCTTTGCGATGTTGAAGAGCCTTGATATTCGAAATGTCATTGTGGCAAAAGATGTTTTGGAAAAAATTATTGTTGGCTGTCCACTGCTCGAGACAATGAGGATTTTATGTGACTTAGTGAGCAACACCCATCTCAAGATTGATGCACCGAATCTCCAATTCCTTAAAGTTAGAGGTGTTTTTGAAGAAATTAAACTTCAGAATACCCCAAATCTTGTTGATGTTTCAATCGACCCAAAAATGGCTTCTAGAAGTAGAAGTTATAGCAAATTGCTCTTGTATTTTCTTAGCCTGCCTCGTATTGAAAGGCTCACAATTGATGGTTGCCTTTTAGAGGTTCGCAAAGAGAATAAGGCTGCTGCTGGAGAACAAGCTACCAATTGGTTAAATAACAATCGGCTTTGGGAATTCACTCAACTGCGACGTTTGAAAGTAACCGGCCTCTATGGTGTTACTGGAGAAGTAGACTTACTTGAATATCTGTTTTTAAGCTCCCCTGCTCTTCAAGAACTAGAAATTTCGTTTAGAGACAAAATGGGGATGGGATTAGATGCTGCTGCTGTGGGAGATTATAGCAATCGAAATTGCACATTCAACCAACTGAGAGTTATAAAAGTAACCAAATTTCGTGGTGTCAAAGCTGAAGCAGGTTTCATCGGATTTCTGCTTTCAAGTTCACCTATGCTCAAGACGATGACTCTTCAGCCTGCTTCTACTGAAGTTTCTTGGGAAGTACTTAAGGTGGTGACCGAGTTCAAGCGCGATTCAGGGCATGCTGAGTTAAAGTTGTTGGACCCATTAAGTCCTTTGAGGGAGTCTTATAATGGCTCCTATACTGACCGGTACCTCCGCACCAAGGCCTCTTCTTATGACTCTTCTGATGAGTCCCTTGATGACTCTTCTGATGAGTCCCTTGATGACGACTGA

Protein Analysis

464

Amino Acids

52.64

Weight (kDa)

8.83

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 57 2.8e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 85 - 234 5e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 102 - 233 6.2e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012136)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 408, 1079, 1290
Acc36I ACCTGC 1 cut(s) 1106
Acc65I GGTACC 1 cut(s) 1311
AccB1I GGYRCC 1 cut(s) 1311
AccI GTMKAC 3 cut(s) 255, 272, 933
AccII CGCG 1 cut(s) 1230
AciI CCGC 1 cut(s) 1318
AcsI RAATTY 4 cut(s) 299, 875, 984, 1091
AcuI CTGAAG 4 cut(s) 650, 1131, 1154, 1206
AcyI GRCGYC 1 cut(s) 169
AfaI GTAC 2 cut(s) 1203, 1313
AfiI CCNNNNNNNGG 4 cut(s) 165, 709, 802, 1324
AflII CTTAAG 1 cut(s) 1205
AgeI ACCGGT 1 cut(s) 1308
AjuI GAANNNNNNNTTGG 6 cut(s) 20, 26, 52, 58, 697, 729
AluBI AGCT 4 cut(s) 194, 842, 960, 1109
AluI AGCT 4 cut(s) 194, 842, 960, 1109
Alw26I GTCTC 2 cut(s) 554, 990
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 3 cut(s) 156, 907, 1326
ApeKI GCWGC 5 cut(s) 201, 824, 827, 1022, 1025
ApoI RAATTY 4 cut(s) 299, 875, 984, 1091
AsiGI ACCGGT 1 cut(s) 1308
Asp718I GGTACC 1 cut(s) 1311
AspLEI GCGC 1 cut(s) 1230
AspS9I GGNCC 3 cut(s) 156, 248, 1261
AsuHPI GGTGA 2 cut(s) 1137, 1225
AsuII TTCGAA 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 557
AvaII GGWCC 2 cut(s) 248, 1261
BanI GGYRCC 1 cut(s) 1311
BarI GAAGNNNNNNTAC 2 cut(s) 921, 953
BbvI GCAGC 5 cut(s) 188, 811, 814, 1009, 1012
BccI CCATC 4 cut(s) 303, 606, 782, 1003
BcoDI GTCTC 2 cut(s) 554, 990
BfaI CTAG 2 cut(s) 717, 980
BfmI CTRYAG 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 1205
BfuAI ACCTGC 1 cut(s) 1106
BisI GCNGC 5 cut(s) 202, 825, 828, 1023, 1026
BlsI GCNGC 5 cut(s) 203, 826, 829, 1024, 1027
BmcAI AGTACT 1 cut(s) 1203
Bme18I GGWCC 2 cut(s) 248, 1261
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 3 cut(s) 156, 248, 1261
BmiI GGNNCC 4 cut(s) 250, 1263, 1297, 1313
BmsI GCATC 3 cut(s) 100, 601, 1009
BpmI CTGGAG 2 cut(s) 852, 945
Bpu14I TTCGAA 1 cut(s) 499
BpuEI CTTGAG 2 cut(s) 587, 1139
Bsa29I ATCGAT 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 1323
BsaWI WCCGGW 1 cut(s) 1308
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 709, 802, 1324
Bse118I RCCGGY 2 cut(s) 905, 1308
Bse1I ACTGG 2 cut(s) 357, 928
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 1323
BseGI GGATG 1 cut(s) 1014
BseLI CCNNNNNNNGG 4 cut(s) 165, 709, 802, 1324
BseMII CTCAG 2 cut(s) 1061, 1236
BseNI ACTGG 2 cut(s) 357, 928
BseXI GCAGC 5 cut(s) 188, 811, 814, 1009, 1012
Bsh1236I CGCG 1 cut(s) 1230
BshFI GGCC 3 cut(s) 158, 909, 1328
BshNI GGYRCC 1 cut(s) 1311
BshTI ACCGGT 1 cut(s) 1308
BshVI ATCGAT 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 2 cut(s) 906, 1309
BslFI GGGAC 4 cut(s) 234, 376, 1339, 1363
BslI CCNNNNNNNGG 4 cut(s) 165, 709, 802, 1324
BsmAI GTCTC 2 cut(s) 554, 990
BsmFI GGGAC 4 cut(s) 234, 376, 1339, 1363
BsnI GGCC 3 cut(s) 158, 909, 1328
BsoBI CYCGRG 1 cut(s) 557
Bsp119I TTCGAA 1 cut(s) 499
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 1 cut(s) 1318
BspANI GGCC 3 cut(s) 158, 909, 1328
BspCNI CTCAG 2 cut(s) 1062, 1237
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 1230
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 250, 1263, 1297, 1313
BspMI ACCTGC 1 cut(s) 1106
BspQI GCTCTTC 2 cut(s) 479, 975
BspT104I TTCGAA 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 1311
BspTI CTTAAG 1 cut(s) 1205
BsrFI RCCGGY 2 cut(s) 905, 1308
BsrI ACTGG 2 cut(s) 357, 928
BssAI RCCGGY 2 cut(s) 905, 1308
BssECI CCNNGG 1 cut(s) 1323
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 1323
Bst6I CTCTTC 7 cut(s) 394, 479, 975, 1173, 1336, 1348, 1372
BstACI GRCGYC 1 cut(s) 169
BstAFI CTTAAG 1 cut(s) 1205
BstBI TTCGAA 1 cut(s) 499
BstC8I GCNNGC 3 cut(s) 761, 1176, 1242
BstDEI CTNAG 4 cut(s) 583, 755, 1070, 1245
BstEII GGTNACC 1 cut(s) 1213
BstENI CCTNNNNNAGG 1 cut(s) 800
BstF5I GGATG 1 cut(s) 1014
BstFNI CGCG 1 cut(s) 1230
BstHHI GCGC 1 cut(s) 1230
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 554, 990
BstMBI GATC 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 1244
BstPI GGTNACC 1 cut(s) 1213
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 1230
BstV1I GCAGC 5 cut(s) 188, 811, 814, 1009, 1012
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 3 cut(s) 158, 909, 1328
BsuTUI ATCGAT 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 491
BtsCI GGATG 1 cut(s) 1014
BtsI GCAGTG 2 cut(s) 120, 551
BtsIMutI CAGTG 2 cut(s) 120, 551
BveI ACCTGC 1 cut(s) 1106
Cac8I GCNNGC 3 cut(s) 761, 1176, 1242
CciI TCATGA 1 cut(s) 241
CfoI GCGC 1 cut(s) 1230
Cfr10I RCCGGY 2 cut(s) 905, 1308
Cfr13I GGNCC 3 cut(s) 156, 248, 1261
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 1202, 1312
CspAI ACCGGT 1 cut(s) 1308
CspCI CAANNNNNGTGG 2 cut(s) 1078, 1113
CviAII CATG 3 cut(s) 227, 242, 1241
CviQI GTAC 2 cut(s) 1202, 1312
DdeI CTNAG 4 cut(s) 583, 755, 1070, 1245
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 7 cut(s) 394, 479, 975, 1173, 1336, 1348, 1372
EarI CTCTTC 7 cut(s) 394, 479, 975, 1173, 1336, 1348, 1372
Eco130I CCWWGG 1 cut(s) 1323
Eco147I AGGCCT 1 cut(s) 1328
Eco47I GGWCC 2 cut(s) 248, 1261
Eco57I CTGAAG 4 cut(s) 650, 1131, 1154, 1206
Eco88I CYCGRG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 1213
EcoNI CCTNNNNNAGG 1 cut(s) 800
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 1213
EcoRI GAATTC 1 cut(s) 875
EcoT14I CCWWGG 1 cut(s) 1323
ErhI CCWWGG 1 cut(s) 1323
FaeI CATG 3 cut(s) 230, 245, 1244
FaqI GGGAC 4 cut(s) 234, 376, 1339, 1363
FatI CATG 3 cut(s) 226, 241, 1240
FblI GTMKAC 3 cut(s) 255, 272, 933
Fnu4HI GCNGC 5 cut(s) 202, 825, 828, 1023, 1026
FokI GGATG 1 cut(s) 1021
Fsp4HI GCNGC 5 cut(s) 202, 825, 828, 1023, 1026
FspBI CTAG 2 cut(s) 717, 980
GlaI GCGC 1 cut(s) 1229
GluI GCNGC 5 cut(s) 202, 825, 828, 1023, 1026
GsuI CTGGAG 2 cut(s) 852, 945
HaeIII GGCC 3 cut(s) 158, 909, 1328
HapII CCGG 2 cut(s) 906, 1309
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 1230
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 3 cut(s) 230, 245, 1244
Hin6I GCGC 1 cut(s) 1228
HinP1I GCGC 1 cut(s) 1228
HpaII CCGG 2 cut(s) 906, 1309
HphI GGTGA 2 cut(s) 1137, 1225
Hpy166II GTNNAC 5 cut(s) 256, 273, 551, 934, 1145
Hpy188I TCNGA 5 cut(s) 107, 669, 1127, 1348, 1372
Hpy188III TCNNGA 7 cut(s) 242, 327, 559, 604, 717, 974, 1156
Hpy8I GTNNAC 5 cut(s) 256, 273, 551, 934, 1145
Hpy99I CGWCG 1 cut(s) 894
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 4 cut(s) 113, 375, 614, 1056
HpyF3I CTNAG 4 cut(s) 583, 755, 1070, 1245
HpySE526I ACGT 1 cut(s) 892
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 3 cut(s) 230, 245, 1244
HspAI GCGC 1 cut(s) 1228
KpnI GGTACC 1 cut(s) 1315
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 2 cut(s) 479, 975
LmnI GCTCC 2 cut(s) 965, 1301
Lsp1109I GCAGC 5 cut(s) 188, 811, 814, 1009, 1012
LweI GCATC 3 cut(s) 100, 601, 1009
MaeI CTAG 2 cut(s) 717, 980
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 7 cut(s) 73, 234, 578, 901, 919, 1084, 1213
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 8 cut(s) 381, 496, 665, 962, 1160, 1323, 1335, 1359
MfeI CAATTG 2 cut(s) 783, 847
MlyI GAGTC 7 cut(s) 412, 1159, 1292, 1334, 1358, 1361, 1385
MmeI TCCRAC 3 cut(s) 18, 24, 1239
MseI TTAA 9 cut(s) 53, 431, 633, 660, 854, 956, 1206, 1250, 1268
MspCI CTTAAG 1 cut(s) 1205
MspI CCGG 2 cut(s) 906, 1309
MunI CAATTG 2 cut(s) 783, 847
MvnI CGCG 1 cut(s) 1230
NdeII GATC 1 cut(s) 223
NlaIII CATG 3 cut(s) 230, 245, 1244
NlaIV GGNNCC 4 cut(s) 250, 1263, 1297, 1313
NmuCI GTSAC 2 cut(s) 578, 1213
NspI RCATGY 1 cut(s) 1244
NspV TTCGAA 1 cut(s) 499
PaeI GCATGC 1 cut(s) 1244
PaeR7I CTCGAG 1 cut(s) 557
PagI TCATGA 1 cut(s) 241
PceI AGGCCT 1 cut(s) 1328
PciSI GCTCTTC 2 cut(s) 479, 975
PfeI GAWTC 4 cut(s) 313, 330, 619, 1232
PinAI ACCGGT 1 cut(s) 1308
PkrI GCNGC 5 cut(s) 203, 826, 829, 1024, 1027
PleI GAGTC 7 cut(s) 412, 1159, 1291, 1334, 1358, 1360, 1384
PpsI GAGTC 7 cut(s) 412, 1159, 1291, 1334, 1358, 1360, 1384
PpuMI RGGWCCY 1 cut(s) 248
PsiI TTATAA 3 cut(s) 408, 1079, 1290
Psp5II RGGWCCY 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 1213
PspN4I GGNNCC 4 cut(s) 250, 1263, 1297, 1313
PspPI GGNCC 3 cut(s) 156, 248, 1261
PspPPI RGGWCCY 1 cut(s) 248
RsaI GTAC 2 cut(s) 1203, 1313
RsaNI GTAC 2 cut(s) 1202, 1312
SapI GCTCTTC 2 cut(s) 479, 975
SaqAI TTAA 9 cut(s) 53, 431, 633, 660, 854, 956, 1206, 1250, 1268
SatI GCNGC 5 cut(s) 202, 825, 828, 1023, 1026
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 3 cut(s) 156, 248, 1261
ScaI AGTACT 1 cut(s) 1203
SchI GAGTC 7 cut(s) 412, 1159, 1292, 1334, 1358, 1361, 1385
SfaNI GCATC 3 cut(s) 100, 601, 1009
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 557
SfuI TTCGAA 1 cut(s) 499
SinI GGWCC 2 cut(s) 248, 1261
SlaI CTCGAG 1 cut(s) 557
SmlI CTYRAG 4 cut(s) 557, 602, 1154, 1205
SmoI CTYRAG 4 cut(s) 557, 602, 1154, 1205
SphI GCATGC 1 cut(s) 1244
SseBI AGGCCT 1 cut(s) 1328
SsiI CCGC 1 cut(s) 1318
SspMI CTAG 2 cut(s) 717, 980
StuI AGGCCT 1 cut(s) 1328
StyI CCWWGG 1 cut(s) 1323
TaiI ACGT 1 cut(s) 895
TaqI TCGA 5 cut(s) 222, 499, 558, 699, 1048
TaqII GACCGA 1 cut(s) 1232
TatI WGTACW 1 cut(s) 1201
TfiI GAWTC 4 cut(s) 313, 330, 619, 1232
Tru1I TTAA 9 cut(s) 53, 431, 633, 660, 854, 956, 1206, 1250, 1268
Tru9I TTAA 9 cut(s) 53, 431, 633, 660, 854, 956, 1206, 1250, 1268
TscAI CASTG 2 cut(s) 120, 558
TseFI GTSAC 2 cut(s) 578, 1213
TseI GCWGC 5 cut(s) 201, 824, 827, 1022, 1025
Tsp45I GTSAC 2 cut(s) 578, 1213
TspDTI ATGAA 4 cut(s) 230, 258, 337, 1111
TspRI CASTG 2 cut(s) 120, 558
Vha464I CTTAAG 1 cut(s) 1205
VpaK11BI GGWCC 2 cut(s) 248, 1261
XagI CCTNNNNNAGG 1 cut(s) 800
XapI RAATTY 4 cut(s) 299, 875, 984, 1091
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 1 cut(s) 1244
XhoI CTCGAG 1 cut(s) 557
XmiI GTMKAC 3 cut(s) 255, 272, 933
XspI CTAG 2 cut(s) 717, 980
ZrmI AGTACT 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.