Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

6430304 .. 6432006

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1047300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCTTGTTTTCTCCCACAACCCATCTCCCAACCCTCTCACCTTCCTCATCACACTTCAAACCCCTCCTAACCCACAAGCCTTTTCTCTCTCTCAGACCCAAGAACCACCTCTTCACCACCAGAGCCTCGGCTGAGAATGGAGCTGGAGCTCTCGGCTCAGTTGCCACAGCCGTGGAGCCCAAAGCAGAGCCCGAGGTCCCCGTGCCCGCCGCTGAGGCTGTTCCGGTGAAGAGTCAGAGCTCTGCCGGGGCTAATGGATCAGCTGGAACTGCTGAGGAGGTAAGCGTGGTGAATTTATTTGAAGATGGGAGATGGGTCAATGGGACTTGGTATTTGAAGCAGTTTGAGAAAAATGGAAAAACTGATTGGGATGCTGTTATTGATGCTGAGGCCAGGAGGAGAAAATGGCTCCAGGACAACCCGGAATCATCCAGTAATGAGAACCCTGTGTTTTTTGACACGTCCATTGTACCTTGGTGGGCATGGATAAAGAGATACCATTTACCTGAAGCTGAACTACTCAACGGTCGTGCTGCTATGGTAGGTTTTTTCATGGCGTATTTTGTTGATAGCTTGACTGGAGTAGGCCTAGTTGACCAAATGGGCAATTTCTTCTGCAAAACGTTATTGTTCATAGCTGTAGGGGGAGTGCTTCTGATCCGCAAGAACGAGGATGTTGAAAACCTAAAGAAACTACTTGAAGAGACGACGTTTTATGATAAGCAATGGCAAGCAACCTGGCAAGAAAAGACACCGGCTAGCAGTAGCAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

261

Amino Acids

28.82

Weight (kDa)

6.54

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	210, 213, 664
AclI	AACGTT	1 cut(s)	626
AclWI	GGATC	2 cut(s)	268, 655
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	474
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	5 cut(s)	61, 305, 340, 683, 704
AjiI	CACGTC	1 cut(s)	465
AjnI	CCWGG	3 cut(s)	395, 414, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	7 cut(s)	146, 152, 243, 266, 515, 576, 641
AluI	AGCT	7 cut(s)	146, 152, 243, 266, 515, 576, 641
Alw21I	GWGCWC	2 cut(s)	154, 245
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	268, 655
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	3, 393, 589
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	2 cut(s)	250, 425
AsuHPI	GGTGA	4 cut(s)	33, 109, 241, 304
AsuNHI	GCTAGC	1 cut(s)	761
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	4 cut(s)	154, 183, 195, 245
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
Bbv12I	GWGCWC	2 cut(s)	154, 245
BbvCI	CCTCAGC	3 cut(s)	216, 276, 390
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	3 cut(s)	33, 302, 309
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	3 cut(s)	397, 416, 742
BcnI	CCSGG	2 cut(s)	250, 425
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	2 cut(s)	593, 762
BfmI	CTRYAG	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	213, 537
BlsI	GCNGC	2 cut(s)	214, 538
Bme1390I	CCNGG	5 cut(s)	250, 397, 416, 425, 742
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	3 cut(s)	180, 201, 413
BmrFI	CCNGG	5 cut(s)	250, 397, 416, 425, 742
BmsI	GCATC	2 cut(s)	364, 376
BmtI	GCTAGC	1 cut(s)	765
BpmI	CTGGAG	3 cut(s)	168, 398, 603
Bpu10I	CCTNAGC	3 cut(s)	216, 276, 390
BpuMI	CCSGG	2 cut(s)	250, 425
BsaJI	CCNNGG	5 cut(s)	129, 174, 195, 249, 476
BsaWI	WCCGGW	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	2 cut(s)	435, 586
Bse3DI	GCAATG	1 cut(s)	734
BseBI	CCWGG	3 cut(s)	397, 416, 742
BseDI	CCNNGG	5 cut(s)	129, 174, 195, 249, 476
BseGI	GGATG	3 cut(s)	379, 431, 682
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	6 cut(s)	109, 126, 174, 207, 267, 381
BseNI	ACTGG	2 cut(s)	435, 586
BseRI	GAGGAG	2 cut(s)	293, 415
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	523
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	3 cut(s)	5, 395, 591
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	2 cut(s)	154, 245
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	4 cut(s)	227, 249, 425, 758
BslFI	GGGAC	2 cut(s)	185, 340
BsmAI	GTCTC	1 cut(s)	701
BsmBI	CGTCTC	1 cut(s)	701
BsmFI	GGGAC	2 cut(s)	185, 340
BsnI	GGCC	3 cut(s)	5, 395, 591
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	154, 183, 195, 210, 245
Bsp143I	GATC	2 cut(s)	260, 660
BspACI	CCGC	3 cut(s)	210, 213, 664
BspANI	GGCC	3 cut(s)	5, 395, 591
BspCNI	CTCAG	6 cut(s)	108, 127, 173, 208, 268, 382
BspLI	GGNNCC	3 cut(s)	180, 201, 413
BspOI	GCTAGC	1 cut(s)	765
BspPI	GGATC	2 cut(s)	268, 655
BsrDI	GCAATG	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	435, 586
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	5 cut(s)	129, 174, 195, 249, 476
BssMI	GATC	2 cut(s)	260, 660
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	3 cut(s)	397, 416, 742
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	3 cut(s)	119, 227, 699
BstC8I	GCNNGC	3 cut(s)	210, 735, 763
BstDEI	CTNAG	6 cut(s)	95, 135, 160, 216, 276, 390
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	379, 431, 682
BstKTI	GATC	2 cut(s)	263, 663
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	2 cut(s)	260, 660
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 272
BstNI	CCWGG	3 cut(s)	397, 416, 742
BstSCI	CCNGG	5 cut(s)	248, 395, 414, 423, 740
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	5, 395, 591
BtgI	CCRYGG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	379, 431, 682
Cac8I	GCNNGC	3 cut(s)	210, 735, 763
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	2 cut(s)	486, 556
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	6 cut(s)	95, 135, 160, 216, 276, 390
DpnI	GATC	2 cut(s)	262, 662
DpnII	GATC	2 cut(s)	260, 660
Eam1104I	CTCTTC	3 cut(s)	119, 227, 699
EarI	CTCTTC	3 cut(s)	119, 227, 699
Ecl136II	GAGCTC	2 cut(s)	152, 243
Eco130I	CCWWGG	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	591
Eco24I	GRGCYC	4 cut(s)	154, 183, 195, 245
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	2 cut(s)	152, 243
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	2 cut(s)	152, 243
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	3 cut(s)	395, 414, 740
EcoT14I	CCWWGG	1 cut(s)	476
EcoT38I	GRGCYC	4 cut(s)	154, 183, 195, 245
ErhI	CCWWGG	1 cut(s)	476
Esp3I	CGTCTC	1 cut(s)	701
FaeI	CATG	2 cut(s)	489, 559
FaiI	YATR	5 cut(s)	487, 542, 557, 638, 720
FaqI	GGGAC	2 cut(s)	185, 340
FatI	CATG	2 cut(s)	485, 555
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	213, 537
FokI	GGATG	3 cut(s)	386, 418, 689
FriOI	GRGCYC	4 cut(s)	154, 183, 195, 245
Fsp4HI	GCNGC	2 cut(s)	213, 537
FspBI	CTAG	2 cut(s)	593, 762
GluI	GCNGC	2 cut(s)	213, 537
GsuI	CTGGAG	3 cut(s)	168, 398, 603
HaeIII	GGCC	3 cut(s)	5, 395, 591
HapII	CCGG	4 cut(s)	227, 249, 425, 758
Hin1II	CATG	2 cut(s)	489, 559
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	235, 428
HpaII	CCGG	4 cut(s)	227, 249, 425, 758
HphI	GGTGA	4 cut(s)	33, 109, 241, 304
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	3 cut(s)	98, 240, 660
Hpy8I	GTNNAC	1 cut(s)	598
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	3 cut(s)	464, 626, 713
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 272
HpyF3I	CTNAG	6 cut(s)	95, 135, 160, 216, 276, 390
HpySE526I	ACGT	3 cut(s)	464, 626, 713
Hsp92II	CATG	2 cut(s)	489, 559
Kzo9I	GATC	2 cut(s)	260, 660
LmnI	GCTCC	4 cut(s)	143, 149, 178, 417
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	2 cut(s)	364, 376
MaeI	CTAG	2 cut(s)	593, 762
MaeII	ACGT	3 cut(s)	464, 626, 713
MalI	GATC	2 cut(s)	262, 662
MboI	GATC	2 cut(s)	260, 660
MboII	GAAGA	5 cut(s)	106, 244, 317, 607, 716
MhlI	GDGCHC	5 cut(s)	154, 183, 195, 210, 245
MluCI	AATT	2 cut(s)	295, 610
MlyI	GAGTC	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	215, 266
MspI	CCGG	4 cut(s)	227, 249, 425, 758
MspR9I	CCNGG	5 cut(s)	250, 397, 416, 425, 742
MvaI	CCWGG	3 cut(s)	397, 416, 742
MwoI	GCNNNNNNNGC	2 cut(s)	218, 272
NciI	CCSGG	2 cut(s)	250, 425
NdeII	GATC	2 cut(s)	260, 660
NheI	GCTAGC	1 cut(s)	761
NlaIII	CATG	2 cut(s)	489, 559
NlaIV	GGNNCC	3 cut(s)	180, 201, 413
NmeAIII	GCCGAG	2 cut(s)	110, 135
OliI	CACNNNNGTG	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	214, 538
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	199
Psp124BI	GAGCTC	2 cut(s)	154, 245
Psp1406I	AACGTT	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	395, 414, 740
PspGI	CCWGG	3 cut(s)	395, 414, 740
PspN4I	GGNNCC	3 cut(s)	180, 201, 413
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	2 cut(s)	154, 245
SatI	GCNGC	2 cut(s)	213, 537
Sau3AI	GATC	2 cut(s)	260, 660
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	5 cut(s)	250, 397, 416, 425, 742
SduI	GDGCHC	5 cut(s)	154, 183, 195, 210, 245
SfaNI	GCATC	2 cut(s)	364, 376
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	295, 610
SseBI	AGGCCT	1 cut(s)	591
SsiI	CCGC	3 cut(s)	210, 213, 664
SspMI	CTAG	2 cut(s)	593, 762
SstI	GAGCTC	2 cut(s)	154, 245
StuI	AGGCCT	1 cut(s)	591
StyD4I	CCNGG	5 cut(s)	248, 395, 414, 423, 740
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	3 cut(s)	467, 629, 716
TasI	AATT	2 cut(s)	295, 610
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	544, 625
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	295
XspI	CTAG	2 cut(s)	593, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.