Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010843

Physical Location & Seq

Genomic Coordinates Reverse (-)

10176150 .. 10176638

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18422.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTTAGATCAGAATTAGGAAGAATAAGATTCTTATTAGGAGCTGAAATGGCGCCGGCGCCGGTGATTTCTCGCCGGAGTTGTTCAATGTCTCCGACACTTGAGACCATTTTTGAAGAAAGATCCGATGATTTTTGTCATCAAGATCGTTATCACACTGTCGTCGTGGGACAAAGAAATCGTTTGTTTCTTCTTGTTCCGGCGATCATATCAGCCGTATCTTGTGTTTTGTTGTATAGACAGGATCGTGTTGTTCGATTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.11

Weight (kDa)

9.14

Isoelectric Point (pI)

75.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18422
prunus_persica	Prupe.4G084500_v2.0.a1 Prupe.4G084700_v2.0.a1 Prupe.6G298100_v2.0.a1
pyrus_communis	pycom10g21540
rosa_chinensis	RchiOBHm_Chr5g0014601 RchiOBHm_Chr5g0014611
rosa_roxburghii	Rroxscaffold_1G00061840 Rroxscaffold_1G00061870 Rroxscaffold_1G00061880
rosa_samantha	Rh5AG115000 Rh5AG115200 Rh5AG115300 Rh5BG111900 Rh5BG112000 Rh5CG123400 Rh5CG123500 Rh5CG123600 Rh5DG111400 Rh5DG111600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	52, 58
AclWI	GGATC	2 cut(s)	117, 252
AcyI	GRCGYC	2 cut(s)	53, 59
AgsI	TTSAA	2 cut(s)	87, 116
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	96, 98
AlwI	GGATC	2 cut(s)	117, 252
AspLEI	GCGC	2 cut(s)	55, 61
AsuHPI	GGTGA	1 cut(s)	76
BanI	GGYRCC	2 cut(s)	52, 58
BceAI	ACGGC	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	96, 98
BfoI	RGCGCY	2 cut(s)	56, 62
BmiI	GGNNCC	2 cut(s)	54, 60
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	53, 59
BsaI	GGTCTC	1 cut(s)	98
Bse118I	RCCGGY	2 cut(s)	55, 61
Bse8I	GATNNNNATC	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	150
BshNI	GGYRCC	2 cut(s)	52, 58
BsiSI	CCGG	4 cut(s)	56, 62, 76, 200
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	96, 98
BsmFI	GGGAC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	98
Bsp143I	GATC	5 cut(s)	8, 122, 145, 204, 244
BspLI	GGNNCC	2 cut(s)	54, 60
BspPI	GGATC	2 cut(s)	117, 252
BspT107I	GGYRCC	2 cut(s)	52, 58
BspTNI	GGTCTC	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	55, 61
BssAI	RCCGGY	2 cut(s)	55, 61
BssMI	GATC	5 cut(s)	8, 122, 145, 204, 244
BssNI	GRCGYC	2 cut(s)	53, 59
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	2 cut(s)	53, 59
BstC8I	GCNNGC	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	56, 62
BstHHI	GCGC	2 cut(s)	55, 61
BstKTI	GATC	5 cut(s)	11, 125, 148, 207, 247
BstMAI	GTCTC	2 cut(s)	96, 98
BstMBI	GATC	5 cut(s)	8, 122, 145, 204, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	2 cut(s)	55, 61
Cfr10I	RCCGGY	2 cut(s)	55, 61
CviJI	RGCY	2 cut(s)	44, 215
CviKI_1	RGCY	2 cut(s)	44, 215
DinI	GGCGCC	2 cut(s)	54, 60
DpnI	GATC	5 cut(s)	10, 124, 147, 206, 246
DpnII	GATC	5 cut(s)	8, 122, 145, 204, 244
Eco31I	GGTCTC	1 cut(s)	98
EgeI	GGCGCC	2 cut(s)	54, 60
EheI	GGCGCC	2 cut(s)	54, 60
FaiI	YATR	2 cut(s)	209, 237
FaqI	GGGAC	1 cut(s)	183
GlaI	GCGC	2 cut(s)	54, 60
HaeII	RGCGCY	2 cut(s)	56, 62
HapII	CCGG	4 cut(s)	56, 62, 76, 200
HhaI	GCGC	2 cut(s)	55, 61
Hin1I	GRCGYC	2 cut(s)	53, 59
Hin6I	GCGC	2 cut(s)	53, 59
HinP1I	GCGC	2 cut(s)	53, 59
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	4 cut(s)	56, 62, 76, 200
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	13, 96, 127
Hpy188III	TCNNGA	2 cut(s)	143, 264
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92I	GRCGYC	2 cut(s)	53, 59
HspAI	GCGC	2 cut(s)	53, 59
KasI	GGCGCC	2 cut(s)	52, 58
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	8, 122, 145, 204, 244
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	5 cut(s)	69, 75, 89, 213, 227
MalI	GATC	5 cut(s)	10, 124, 147, 206, 246
MboI	GATC	5 cut(s)	8, 122, 145, 204, 244
MboII	GAAGA	3 cut(s)	33, 128, 182
MflI	RGATCY	1 cut(s)	122
MluCI	AATT	1 cut(s)	14
Mly113I	GGCGCC	2 cut(s)	53, 59
MmeI	TCCRAC	1 cut(s)	119
MreI	CGCCGGCG	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	55
MspI	CCGG	4 cut(s)	56, 62, 76, 200
MwoI	GCNNNNNNNGC	1 cut(s)	50
NaeI	GCCGGC	1 cut(s)	57
NarI	GGCGCC	2 cut(s)	53, 59
NdeII	GATC	5 cut(s)	8, 122, 145, 204, 244
NgoMIV	GCCGGC	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	54, 60
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	30
PluTI	GGCGCC	2 cut(s)	56, 62
PspN4I	GGNNCC	2 cut(s)	54, 60
PsuI	RGATCY	1 cut(s)	122
Sau3AI	GATC	5 cut(s)	8, 122, 145, 204, 244
SetI	ASST	1 cut(s)	46
SfoI	GGCGCC	2 cut(s)	54, 60
SgrAI	CRCCGGYG	2 cut(s)	55, 61
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	14
SspDI	GGCGCC	2 cut(s)	52, 58
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.