Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010843

Physical Location & Seq

Genomic Coordinates Reverse (-)

10470500 .. 10488628

Gene Structure 18129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG112000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGTCTGATGGGAAGGGAAATGAGGATCATGCAGGACTTGGGCGAAGTTGCACCAGCACTTATGATTCCCCACGAGAAGCCTTCGAATAACATTTCGAAAATGGAGACCATCGTTGAAGATGAAGGGCTATTTTCTGATTATTATAGCTTTCAGATTGTGCCAAAGCGAGTGGTGTTTCTTCTTCCGGAGTTTCTAGAAGAGGTTGCTCATTTCCTCGACATTGTAGATCAGCGGTTTTCAACATGTGGTTTTGTCAAATTTACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

90

Amino Acids

10.39

Weight (kDa)

4.65

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18422
prunus_persica	Prupe.4G084500_v2.0.a1 Prupe.4G084700_v2.0.a1 Prupe.6G298100_v2.0.a1
pyrus_communis	pycom10g21540
rosa_chinensis	RchiOBHm_Chr5g0014601 RchiOBHm_Chr5g0014611
rosa_roxburghii	Rroxscaffold_1G00061840 Rroxscaffold_1G00061870 Rroxscaffold_1G00061880
rosa_samantha	Rh5AG115000 Rh5AG115200 Rh5AG115300 Rh5BG111900 Rh5BG112000 Rh5CG123400 Rh5CG123500 Rh5CG123600 Rh5DG111400 Rh5DG111600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	119, 243
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	260
AsuII	TTCGAA	2 cut(s)	86, 98
BauI	CACGAG	1 cut(s)	74
BccI	CCATC	2 cut(s)	4, 119
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	197
Bpu14I	TTCGAA	2 cut(s)	86, 98
BsaI	GGTCTC	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	101
Bsp119I	TTCGAA	2 cut(s)	86, 98
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	27, 229
BspACI	CCGC	1 cut(s)	235
BspEI	TCCGGA	1 cut(s)	187
BspPI	GGATC	1 cut(s)	35
BspT104I	TTCGAA	2 cut(s)	86, 98
BspTNI	GGTCTC	1 cut(s)	101
BssMI	GATC	2 cut(s)	27, 229
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	195
BstBI	TTCGAA	2 cut(s)	86, 98
BstKTI	GATC	2 cut(s)	30, 232
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	27, 229
BstNSI	RCATGY	1 cut(s)	249
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	2 cut(s)	31, 246
CviJI	RGCY	3 cut(s)	82, 130, 150
CviKI_1	RGCY	3 cut(s)	82, 130, 150
DpnI	GATC	2 cut(s)	29, 231
DpnII	GATC	2 cut(s)	27, 229
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	34, 249
FaiI	YATR	4 cut(s)	32, 65, 147, 247
FatI	CATG	2 cut(s)	30, 245
FspBI	CTAG	1 cut(s)	197
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	2 cut(s)	34, 249
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	9, 139, 156
Hpy188III	TCNNGA	2 cut(s)	188, 197
HpyAV	CCTTC	3 cut(s)	9, 93, 119
HpyCH4V	TGCA	2 cut(s)	34, 53
Hsp92II	CATG	2 cut(s)	34, 249
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	27, 229
LpnPI	CCDG	3 cut(s)	20, 69, 201
MaeI	CTAG	1 cut(s)	197
MalI	GATC	2 cut(s)	29, 231
MboI	GATC	2 cut(s)	27, 229
MboII	GAAGA	4 cut(s)	131, 173, 176, 212
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	3 cut(s)	18, 196, 227
MroI	TCCGGA	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	27, 229
NlaIII	CATG	2 cut(s)	34, 249
NspI	RCATGY	1 cut(s)	249
NspV	TTCGAA	2 cut(s)	86, 98
PciI	ACATGT	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	27, 229
SetI	ASST	2 cut(s)	152, 207
SfuI	TTCGAA	2 cut(s)	86, 98
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	197
TaqI	TCGA	3 cut(s)	86, 98, 219
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	138
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	249
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.