Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

10273480 .. 10274872

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGTTGGGTGAGACACGTGGTGGAATCGGAGGAGGAGAGTCGATGAGTGATCTTACGGCTGAACAGTTATTCAAGATCAACGAGCTTCATCTAAAAACGGTGGAGGCAGAGAACAAGCTGACTAAGGTATCCGCGAGCTTACAAGAAGACACGGCGGATACGCCTATCGCCGTTGCAGCGTTTTACAAAGAAGTAATCGGACAAGCTGACGTGGTGGTCGAGCGTGCGCTTGATAAGCATGAGGAGGACATGGGTGGTTTATTGGTTGAAGCAGATAAGCTGAGGATGACCACGTTGACCAAAATTGTTGACATTTTAACGGCGGTTCAAGCTGCGGATTTTCTTCTTGCCGGGAAAAAACTTCATTTGGCGATGCATGAGTGGGGAAAATCAAGAGAACATCGACGGCTTGAAGCTAGTGGTGGTGATTCCGGTGGAAATGTTACCAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

152

Amino Acids

16.41

Weight (kDa)

5.15

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	137
AciI	CCGC	4 cut(s)	135, 158, 326, 338
AcvI	CACGTG	1 cut(s)	20
AdeI	CACNNNGTG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	76, 272, 332, 416
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	7 cut(s)	88, 121, 141, 209, 283, 335, 419
AluI	AGCT	7 cut(s)	88, 121, 141, 209, 283, 335, 419
Alw26I	GTCTC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	179, 335
AspLEI	GCGC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	23, 440
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	191, 322
BceAI	ACGGC	5 cut(s)	75, 158, 171, 339, 425
BciVI	GTATCC	2 cut(s)	142, 154
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	420
BfuI	GTATCC	2 cut(s)	142, 154
BisI	GCNGC	2 cut(s)	180, 336
BlsI	GCNGC	2 cut(s)	181, 337
Bme1390I	CCNGG	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	434
BseGI	GGATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	3 cut(s)	48, 51, 260
BseXI	GCAGC	2 cut(s)	191, 322
Bsh1236I	CGCG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	354, 435
BsmAI	GTCTC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	52, 78
BspACI	CCGC	4 cut(s)	135, 158, 326, 338
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	137
BssMI	GATC	2 cut(s)	52, 78
Bst4CI	ACNGT	2 cut(s)	69, 103
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	139, 228
BstDEI	CTNAG	2 cut(s)	126, 284
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	2 cut(s)	55, 81
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	52, 78
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 238, 332
BstSCI	CCNGG	1 cut(s)	353
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	191, 322
BstV2I	GAAGAC	1 cut(s)	156
BsuI	GTATCC	2 cut(s)	142, 154
BtgZI	GCGATG	1 cut(s)	389
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	139, 228
CfoI	GCGC	1 cut(s)	232
CviAII	CATG	3 cut(s)	242, 253, 380
CviJI	RGCY	9 cut(s)	62, 88, 121, 141, 209, 283, 335, 412, 419
CviKI_1	RGCY	9 cut(s)	62, 88, 121, 141, 209, 283, 335, 412, 419
DdeI	CTNAG	2 cut(s)	126, 284
DpnI	GATC	2 cut(s)	54, 80
DpnII	GATC	2 cut(s)	52, 78
DraIII	CACNNNGTG	1 cut(s)	23
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	381
FaeI	CATG	3 cut(s)	245, 256, 383
FaiI	YATR	3 cut(s)	243, 254, 381
FatI	CATG	3 cut(s)	241, 252, 379
Fnu4HI	GCNGC	2 cut(s)	180, 336
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	180, 336
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	180, 336
HapII	CCGG	2 cut(s)	354, 435
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	245, 256, 383
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	300, 313
HindII	GTYRAC	2 cut(s)	300, 313
HinfI	GANTC	3 cut(s)	27, 41, 431
HpaII	CCGG	2 cut(s)	354, 435
HphI	GGTGA	2 cut(s)	23, 440
Hpy166II	GTNNAC	2 cut(s)	300, 313
Hpy188I	TCNGA	2 cut(s)	32, 203
Hpy188III	TCNNGA	2 cut(s)	76, 396
Hpy8I	GTNNAC	2 cut(s)	300, 313
Hpy99I	CGWCG	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	69, 103
HpyCH4IV	ACGT	3 cut(s)	19, 213, 296
HpyCH4V	TGCA	2 cut(s)	179, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 238, 332
HpyF3I	CTNAG	2 cut(s)	126, 284
HpySE526I	ACGT	3 cut(s)	19, 213, 296
Hsp92II	CATG	3 cut(s)	245, 256, 383
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	52, 78
LpnPI	CCDG	2 cut(s)	367, 448
Lsp1109I	GCAGC	2 cut(s)	191, 322
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	3 cut(s)	19, 213, 296
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	2 cut(s)	54, 80
MboI	GATC	2 cut(s)	52, 78
MboII	GAAGA	2 cut(s)	161, 338
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	26, 29, 100, 238, 241, 279
Mph1103I	ATGCAT	1 cut(s)	381
MseI	TTAA	1 cut(s)	320
MspI	CCGG	2 cut(s)	354, 435
MspR9I	CCNGG	1 cut(s)	355
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	179, 238, 332
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	2 cut(s)	52, 78
NlaIII	CATG	3 cut(s)	245, 256, 383
NsiI	ATGCAT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	27, 431
PkrI	GCNGC	2 cut(s)	181, 337
PleI	GAGTC	1 cut(s)	49
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	20
PspCI	CACGTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	2 cut(s)	180, 336
Sau3AI	GATC	2 cut(s)	52, 78
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	355
SfaNI	GCATC	1 cut(s)	366
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	4 cut(s)	135, 158, 326, 338
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	69, 103
TaiI	ACGT	3 cut(s)	22, 216, 299
TaqI	TCGA	3 cut(s)	44, 222, 406
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	27, 431
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	2 cut(s)	179, 335
TspDTI	ATGAA	2 cut(s)	80, 356
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.