Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Reverse (-)

43241938 .. 43242198

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1299000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGATTGCGAAAGGTTTGAGTGAAACTGGGGAGATGAATAGGGAAGTGGAGGAGGCCCTGGATGAGCATGGCAAAGCCATGGTTAGGGTTATGGAGAAGGCTGATCAGTTGAGGCTGAGCACGCTTAAGGAGCTTGTTAAAATATTGACACCTCTTCAGGCTATTGATTTCATGGTGGCGAGTAAGAAGCTTCATCTGTGTGTGCATAAGTGGGGTAGGAAGAGAGACCAATCGCATGGGAGGGAAAATATGGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

87

Amino Acids

9.87

Weight (kDa)

6.91

Isoelectric Point (pI)

21.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	133, 190
AluI	AGCT	2 cut(s)	133, 190
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	57, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	57, 78
BseGI	GGATG	2 cut(s)	67, 259
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	103
Bsp1720I	GCTNAGC	1 cut(s)	116
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	57, 78
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	159, 215
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	67, 259
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 130
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	67, 259
Cac8I	GCNNGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	4 cut(s)	68, 79, 172, 236
CviJI	RGCY	7 cut(s)	56, 77, 101, 115, 133, 161, 190
CviKI_1	RGCY	7 cut(s)	56, 77, 101, 115, 133, 161, 190
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	159, 215
EarI	CTCTTC	2 cut(s)	159, 215
Eco130I	CCWWGG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	4 cut(s)	71, 82, 175, 239
FaiI	YATR	7 cut(s)	69, 80, 92, 173, 207, 237, 251
FatI	CATG	4 cut(s)	67, 78, 171, 235
FbaI	TGATCA	1 cut(s)	103
FokI	GGATG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	71, 82, 175, 239
HindIII	AAGCTT	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 130
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	71, 82, 175, 239
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	12, 44, 71, 143
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	146, 232
MhlI	GDGCHC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	43, 46, 105, 162, 234
MseI	TTAA	3 cut(s)	126, 138, 259
MslI	CAYNNNNRTG	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	121, 130
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	71, 82, 175, 239
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	126, 138, 259
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	4 cut(s)	16, 135, 154, 192
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SspI	AATATT	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	78
Tru1I	TTAA	3 cut(s)	126, 138, 259
Tru9I	TTAA	3 cut(s)	126, 138, 259
TspDTI	ATGAA	3 cut(s)	50, 160, 182
Vha464I	CTTAAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.