Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

10281033 .. 10281740

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGTTTACAAACTAAACACATAGATGATCTCAAAGAAGCACTCATGTGTCAACGAAACAACGATGACAAACTCGAAGACCTCGTTGGTAAAATCGTCAATGACTACCACACATATGCGGGAAAACGATCAGAGCTCTCGTACCGATGCTGCGCTCACTACTTTGCACCGTCGTGGAACACTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGACTTATATACGCACTTTGTGGATCCCAGGCCGAAACTCAGCTTTCTCAATATCTTCTTAAGATCGATGACGACTTCGATATAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAGCTTGGAAAACTCAATGACTTGCATTTGGAGGTAATAAAGAAAGAAGACAAGATTACGAAGACATCTGCGAATTTTCAAGACGATGTGGCGGATTTGCCAATCGCGGATGTGGTGCATGCTGATGTAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGAATGGCGGTTTTACTGGCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGACGTTGTCACACCGCTTCAAGCGGTGGAGTTTTTGCTTGCCGGAAAAAGATTACAGCTGTCGTTGCACGACCGGGGAAGAGTTAGAGCAGATGTTTGTGGAGGAGTGGGGGGCGCCGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

235

Amino Acids

26.15

Weight (kDa)

5.14

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	7 - 84	4.5e-26	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	695
AccII	CGCG	2 cut(s)	353, 464
AclWI	GGATC	2 cut(s)	255, 268
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	696
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	437, 602
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AleI	CACNNNNGTG	2 cut(s)	46, 172
AluBI	AGCT	4 cut(s)	136, 280, 361, 640
AluI	AGCT	4 cut(s)	136, 280, 361, 640
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	2 cut(s)	255, 268
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	2 cut(s)	155, 698
AsuC2I	CCSGG	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	3 cut(s)	84, 411, 425
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	557
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	699
BfrI	CTTAAG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	151, 699
BlsI	GCNGC	2 cut(s)	152, 700
Bme1390I	CCNGG	2 cut(s)	266, 656
BmiI	GGNNCC	2 cut(s)	262, 697
BmrFI	CCNGG	2 cut(s)	266, 656
BmsI	GCATC	2 cut(s)	137, 487
BpiI	GAAGAC	3 cut(s)	84, 411, 425
Bpu10I	CCTNAGC	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	656
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	264, 325, 655
Bse1I	ACTGG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	266
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	264, 325, 655
BseGI	GGATG	4 cut(s)	213, 221, 472, 502
BseMII	CTCAG	2 cut(s)	290, 545
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	353, 464
Bsh1285I	CGRYCG	1 cut(s)	655
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	624, 655
BsmAI	GTCTC	1 cut(s)	557
BsmBI	CGTCTC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	28, 128, 260, 300, 343
Bsp19I	CCATGG	1 cut(s)	325
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	289, 546
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	2 cut(s)	353, 464
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	262, 697
BspPI	GGATC	2 cut(s)	255, 268
BspT107I	GGYRCC	1 cut(s)	695
BspTI	CTTAAG	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	264, 325, 655
BssMI	GATC	5 cut(s)	28, 128, 260, 300, 343
BssNI	GRCGYC	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	171, 197
Bst6I	CTCTTC	2 cut(s)	510, 655
BstACI	GRCGYC	1 cut(s)	696
BstAFI	CTTAAG	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	477, 621
BstDEI	CTNAG	3 cut(s)	276, 554, 569
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	4 cut(s)	213, 221, 472, 502
BstFNI	CGCG	2 cut(s)	353, 464
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	2 cut(s)	155, 698
BstKTI	GATC	5 cut(s)	31, 131, 263, 303, 346
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	5 cut(s)	28, 128, 260, 300, 343
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 646
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	264, 654
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	2 cut(s)	353, 464
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	3 cut(s)	84, 411, 425
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	269
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	4 cut(s)	213, 221, 472, 502
Cac8I	GCNNGC	2 cut(s)	477, 621
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	155, 698
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	5 cut(s)	46, 326, 337, 476, 512
CviJI	RGCY	6 cut(s)	136, 269, 280, 361, 545, 640
CviKI_1	RGCY	6 cut(s)	136, 269, 280, 361, 545, 640
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	276, 554, 569
DinI	GGCGCC	1 cut(s)	697
DpnI	GATC	5 cut(s)	30, 130, 262, 302, 345
DpnII	GATC	5 cut(s)	28, 128, 260, 300, 343
DraIII	CACNNNGTG	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	510, 655
EarI	CTCTTC	2 cut(s)	510, 655
EciI	GGCGGA	2 cut(s)	464, 554
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	697
EheI	GGCGCC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	5 cut(s)	49, 329, 340, 479, 515
FatI	CATG	5 cut(s)	45, 325, 336, 475, 511
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	151, 699
FokI	GGATG	4 cut(s)	220, 228, 479, 509
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	151, 699
GlaI	GCGC	2 cut(s)	154, 697
GluI	GCNGC	2 cut(s)	151, 699
HaeII	RGCGCY	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	624, 655
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	2 cut(s)	155, 698
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	5 cut(s)	49, 329, 340, 479, 515
Hin6I	GCGC	2 cut(s)	153, 696
HinP1I	GCGC	2 cut(s)	153, 696
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HpaII	CCGG	2 cut(s)	624, 655
Hpy166II	GTNNAC	3 cut(s)	8, 53, 583
Hpy188I	TCNGA	2 cut(s)	133, 707
Hpy188III	TCNNGA	2 cut(s)	337, 437
Hpy8I	GTNNAC	3 cut(s)	8, 53, 583
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	171, 197
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	4 cut(s)	167, 382, 475, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 646
HpyF3I	CTNAG	3 cut(s)	276, 554, 569
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	5 cut(s)	49, 329, 340, 479, 515
HspAI	GCGC	2 cut(s)	153, 696
KasI	GGCGCC	1 cut(s)	695
Kzo9I	GATC	5 cut(s)	28, 128, 260, 300, 343
LpnPI	CCDG	5 cut(s)	251, 278, 521, 637, 668
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	137, 487
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	5 cut(s)	30, 130, 262, 302, 345
MboI	GATC	5 cut(s)	28, 128, 260, 300, 343
MboII	GAAGA	8 cut(s)	89, 219, 284, 416, 430, 527, 586, 672
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	430
Mly113I	GGCGCC	1 cut(s)	696
MnlI	CCTC	8 cut(s)	92, 206, 382, 487, 511, 535, 549, 677
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	5 cut(s)	24, 46, 114, 172, 480
MspA1I	CMGCKG	2 cut(s)	640, 701
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	2 cut(s)	624, 655
MspR9I	CCNGG	2 cut(s)	266, 656
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	353, 464
MwoI	GCNNNNNNNGC	2 cut(s)	485, 646
NarI	GGCGCC	1 cut(s)	696
NciI	CCSGG	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	5 cut(s)	28, 128, 260, 300, 343
NlaIII	CATG	5 cut(s)	49, 329, 340, 479, 515
NlaIV	GGNNCC	2 cut(s)	262, 697
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	479
OliI	CACNNNNGTG	2 cut(s)	46, 172
PaeI	GCATGC	1 cut(s)	479
PagI	TCATGA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	152, 700
PluTI	GGCGCC	1 cut(s)	699
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	262, 697
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	5 cut(s)	24, 46, 114, 172, 480
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	151, 699
Sau3AI	GATC	5 cut(s)	28, 128, 260, 300, 343
ScrFI	CCNGG	2 cut(s)	266, 656
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	84, 138, 282, 363, 393, 560, 588, 642
SfaNI	GCATC	2 cut(s)	137, 487
SfcI	CTRYAG	1 cut(s)	186
SfoI	GGCGCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	5 cut(s)	24, 46, 114, 172, 480
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	1 cut(s)	430
SspDI	GGCGCC	1 cut(s)	695
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	264, 654
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	171, 197
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	75, 303, 315
TasI	AATT	1 cut(s)	430
TauI	GCSGC	1 cut(s)	701
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	223, 325, 528
Tth111I	GACNNNGTC	1 cut(s)	587
Vha464I	CTTAAG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.