Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

7005452 .. 7005832

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGCTCCACACAGCTTCTGATGATCAACGCCTTGCAGAGCAAGACAATAAGCGAGGAAGAGAGCCTGACGATGAAGCTGGCGGCTCTGCAGGAGGACATAGAGCCGATTGCGATGATTGCGAAAGGGCTGAGCAAAGTTGGGGAGATGAACGGGGTGGTGGAAAAGGTTCTGGATAATCATGGTCGACAAATGGTCAAGGTTTTGGAGGAGGCAGATGGGCTGAGGATCAACACGCTTAAGGAGCTTGTGAAGATATTGAGTCCTCTTCAGGCAGTGGATTTTCTGGTGGCGAGTAAGAAGCTTCATCTCTGTGTGCATAATTGGGGAAGGCAGAGGGATCAGAAGCATGGGAGGAAAGAAAGCGATGAGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

126

Amino Acids

14.11

Weight (kDa)

6.08

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	236, 348
AcuI	CTGAAG	1 cut(s)	254
AflII	CTTAAG	1 cut(s)	239
AhdI	GACNNNNNGTC	1 cut(s)	194
AluBI	AGCT	5 cut(s)	6, 16, 79, 247, 304
AluI	AGCT	5 cut(s)	6, 16, 79, 247, 304
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	236, 348
AlwNI	CAGNNNCTG	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	212
BclI	TGATCA	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	1 cut(s)	84
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	85
BmeRI	GACNNNNNGTC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	122, 215
BseRI	GAGGAG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	24, 228, 340
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	123, 216
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	2 cut(s)	236, 348
BspTI	CTTAAG	1 cut(s)	239
BssMI	GATC	3 cut(s)	24, 228, 340
Bst6I	CTCTTC	2 cut(s)	54, 273
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	131, 224
BstKTI	GATC	3 cut(s)	27, 231, 343
BstMBI	GATC	3 cut(s)	24, 228, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 244
BstSFI	CTRYAG	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	19
CviAII	CATG	2 cut(s)	182, 350
DdeI	CTNAG	2 cut(s)	131, 224
DpnI	GATC	3 cut(s)	26, 230, 342
DpnII	GATC	3 cut(s)	24, 228, 340
DriI	GACNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	54, 273
Eam1105I	GACNNNNNGTC	1 cut(s)	194
EarI	CTCTTC	2 cut(s)	54, 273
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	185, 353
FaiI	YATR	4 cut(s)	101, 183, 321, 351
FatI	CATG	2 cut(s)	181, 349
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	185, 353
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	21, 345
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	37, 91, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 244
HpyF3I	CTNAG	2 cut(s)	131, 224
Hsp92II	CATG	2 cut(s)	185, 353
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 228, 340
LmnI	GCTCC	2 cut(s)	11, 244
LpnPI	CCDG	6 cut(s)	65, 77, 80, 158, 257, 272
MalI	GATC	3 cut(s)	26, 230, 342
MboI	GATC	3 cut(s)	24, 228, 340
MboII	GAAGA	3 cut(s)	71, 260, 265
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	9 cut(s)	49, 88, 202, 205, 219, 276, 330, 348, 364
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	240, 379
MslI	CAYNNNNRTG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	119, 244
NdeII	GATC	3 cut(s)	24, 228, 340
NlaIII	CATG	2 cut(s)	185, 353
PdmI	GAANNNNTTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	240, 379
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	24, 228, 340
SchI	GAGTC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	8, 18, 81, 171, 204, 249, 306
SfcI	CTRYAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	8
TaqI	TCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	322
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	240, 379
Tru9I	TTAA	2 cut(s)	240, 379
TscAI	CASTG	1 cut(s)	282
TspDTI	ATGAA	3 cut(s)	89, 164, 296
TspRI	CASTG	1 cut(s)	282
Vha464I	CTTAAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.