Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

7005069 .. 7005365

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG081700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCAAGCGGTGACAGAGAGGAATCCAAATGCTGCTTCAAAGAATGGATGACAACCCAAGAGAAAGACCTCTCGGAGCTTTTCCAAGCTCTCACCGTCGAGCCGGAAAACATTGACCAACTTAAACAGCTCGCCGAGAAGTGCATCACTCACTTCCAGGACTACATCAAAAAGCGTAACAAACTCGCCCACAAAGACATCTCTGCCTACTTTGCACCGAACTGGTGCTCTCCCTGGGAGAACTCTCTTCTCTGGATCGCCGGCTGCCGCCCTTCCTTATTTTTCCGCCTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

98

Amino Acids

11.55

Weight (kDa)

6.09

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	24 - 98	1.1e-25	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 268, 286
AclWI	GGATC	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	156, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	79, 89, 130
AluI	AGCT	3 cut(s)	79, 89, 130
Alw21I	GWGCWC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	33, 264
AsuHPI	GGTGA	2 cut(s)	23, 85
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	20, 251
BciT130I	CCWGG	2 cut(s)	158, 235
BisI	GCNGC	3 cut(s)	34, 265, 268
BlsI	GCNGC	3 cut(s)	35, 266, 269
Bme1390I	CCNGG	2 cut(s)	158, 235
BmrFI	CCNGG	2 cut(s)	158, 235
BmsI	GCATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	233, 234
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	158, 235
BseDI	CCNNGG	2 cut(s)	233, 234
BseGI	GGATG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	20, 251
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	104, 261
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	3 cut(s)	9, 268, 286
BspPI	GGATC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	233, 234
BssMI	GATC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	158, 235
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	7, 132, 262
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	158, 235
BstSCI	CCNGG	2 cut(s)	156, 233
BstV1I	GCAGC	2 cut(s)	20, 251
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	7, 132, 262
Cfr10I	RCCGGY	1 cut(s)	260
CviJI	RGCY	5 cut(s)	79, 89, 103, 130, 264
CviKI_1	RGCY	5 cut(s)	79, 89, 103, 130, 264
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	156, 233
Fnu4HI	GCNGC	3 cut(s)	34, 265, 268
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	34, 265, 268
GluI	GCNGC	3 cut(s)	34, 265, 268
HapII	CCGG	2 cut(s)	104, 261
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	104, 261
HphI	GGTGA	2 cut(s)	23, 85
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	144, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	117, 143, 170, 208, 220, 238, 247, 274
Lsp1109I	GCAGC	2 cut(s)	20, 251
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	11, 176
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	13, 80
MroNI	GCCGGC	1 cut(s)	260
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	104, 261
MspR9I	CCNGG	2 cut(s)	158, 235
MvaI	CCWGG	2 cut(s)	158, 235
MwoI	GCNNNNNNNGC	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	1 cut(s)	255
NgoMIV	GCCGGC	1 cut(s)	260
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	11
PasI	CCCWGGG	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	3 cut(s)	35, 266, 269
Psp6I	CCWGG	2 cut(s)	156, 233
PspGI	CCWGG	2 cut(s)	156, 233
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	34, 265, 268
Sau3AI	GATC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	158, 235
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	4 cut(s)	72, 81, 91, 132
SfaNI	GCATC	1 cut(s)	153
SsiI	CCGC	3 cut(s)	9, 268, 286
StyD4I	CCNGG	2 cut(s)	156, 233
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	99
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	33, 264
Tsp45I	GTSAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.