Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030776.1

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 243

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030776.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

aacaataatggccatgaagaaggaattgatgatcaagagaagcgagttgagtccactctagcttccaaggaggaaggtttggagaagattttgcacaaggctgatgacttgagattgagaacacttaataacatcacaaaaattctgagttcaatccaggccgttcatttcttgattgctgctgcagagttgcacttgaggcttcatgactggggcaaaatgaaagacgcctcaagatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

80

Amino Acids

9.15

Weight (kDa)

6.2

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AoxI	GGCC	2 cut(s)	10, 159
ApeKI	GCWGC	2 cut(s)	179, 182
ApoI	RAATTY	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	166, 169
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BpuEI	CTTGAG	3 cut(s)	130, 217, 217
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	166, 169
BshFI	GGCC	2 cut(s)	12, 161
BsnI	GGCC	2 cut(s)	12, 161
Bsp143I	GATC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	12, 161
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	166, 169
BsuRI	GGCC	2 cut(s)	12, 161
CciI	TCATGA	1 cut(s)	205
CseI	GACGC	1 cut(s)	236
CviAII	CATG	2 cut(s)	14, 206
CviJI	RGCY	5 cut(s)	12, 62, 101, 161, 202
CviKI_1	RGCY	5 cut(s)	12, 62, 101, 161, 202
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	17, 209
FaiI	YATR	2 cut(s)	15, 207
FatI	CATG	2 cut(s)	13, 205
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	180, 183
Fsp4HI	GCNGC	2 cut(s)	180, 183
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	2 cut(s)	180, 183
HaeIII	GGCC	2 cut(s)	12, 161
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	17, 209
HinfI	GANTC	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	4 cut(s)	35, 172, 206, 234
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	14, 68
HpyCH4V	TGCA	3 cut(s)	94, 185, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	17, 209
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	3 cut(s)	143, 170, 196
Lsp1109I	GCAGC	2 cut(s)	166, 169
MaeI	CTAG	1 cut(s)	59
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	29, 97
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	2 cut(s)	24, 141
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	64, 192, 241
Mox20I	TGGCCA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	17, 209
PagI	TCATGA	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	181, 184
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	180, 183
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	2 cut(s)	64, 79
SfcI	CTRYAG	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	109, 196, 232
SmoI	CTYRAG	3 cut(s)	109, 196, 232
Sse9I	AATT	2 cut(s)	24, 141
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	66
TasI	AATT	2 cut(s)	24, 141
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	2 cut(s)	179, 182
TspDTI	ATGAA	4 cut(s)	30, 155, 194, 236
XapI	RAATTY	1 cut(s)	141
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.