Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Reverse (-)

18589418 .. 18591506

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAAAACAAAAACACACAAAACACAAACACGCAAACCAAAAGAGATCAAACCAATAATCAAAATACTCCTCATTATATCAGAAAAAAAAAAAAAAATGGGATCTTCATCAAAGAACATCGAACAAGCTCAAGATTCTTATCTCGAGTGGATGAGTTTGCAATCTCAACGCATCCCTGAGCTCAAACAACTCTTAGCTCAACGACGATCTCACGGTGATGAAGATAATGATAACAAGCTTCGTAAGTTAACGGGAAAAATCATCGGTGATTTCAAAAATTACGCCGCAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCCACGTGGAACAGTCCTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTTCTTTAGGCTCGTTTATGCTTTGTGTGGGTCACAAACTGAGATCCGTGTGACTCAGTTTCTCCGCAACATCGACGGCTACGAATCTTCAGGTGGTGGCGGCGGTGCATCACTTAGCGACTTAAGTGCGGAGCAGCTAGCTAAAATCAATGTGTTGCATGTAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACGCAGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATGTCGGAGAGCCTAACGTAGTGGTGGATCAAGCTCTCGACAAGCAAGAAGAAGCTATGGCTCGTTTATTGGTCGAGGCCGATAATCTAAGGGTTGATACTTTAGCGAAGATCCTCGGGATTCTATCTCCGGTACAAGGAGCGGATTTCTTGCTCGCTGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACTATGAGAGATCGTCGCCGTCGTGACTGTATGGTTGACACCGAAGTAATATTCGATGCATGTACAACTGTGAATAGTGGCCCACGCCCCACGGAGACGACAAATAATGAGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

323

Amino Acids

36.28

Weight (kDa)

8.45

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	61 - 139	1e-23	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	800
AccI	GTMKAC	1 cut(s)	385
AciI	CCGC	7 cut(s)	285, 460, 495, 498, 524, 620, 800
AclWI	GGATC	4 cut(s)	109, 433, 693, 763
AcuI	CTGAAG	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	792, 916
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflII	CTTAAG	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	601, 941
AlwI	GGATC	4 cut(s)	109, 433, 693, 763
Ama87I	CYCGRG	2 cut(s)	143, 773
AoxI	GGCC	2 cut(s)	735, 931
ApeKI	GCWGC	2 cut(s)	529, 617
AspS9I	GGNCC	1 cut(s)	932
AsuHPI	GGTGA	3 cut(s)	227, 278, 299
AsuNHI	GCTAGC	1 cut(s)	532
AvaI	CYCGRG	2 cut(s)	143, 773
BanII	GRGCYC	1 cut(s)	183
BbrPI	CACGTG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	541, 629
BccI	CCATC	4 cut(s)	367, 397, 638, 646
BceAI	ACGGC	2 cut(s)	487, 855
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BcoDI	GTCTC	2 cut(s)	601, 941
BfaI	CTAG	1 cut(s)	533
BfrI	CTTAAG	1 cut(s)	517
BglI	GCCNNNNNGGC	1 cut(s)	641
BisI	GCNGC	4 cut(s)	285, 496, 530, 618
BlsI	GCNGC	4 cut(s)	286, 497, 531, 619
BmeT110I	CYCGRG	2 cut(s)	143, 773
BmgT120I	GGNCC	1 cut(s)	932
BmsI	GCATC	4 cut(s)	180, 512, 828, 898
BmtI	GCTAGC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	114, 583
BsaAI	YACGTR	1 cut(s)	339
BsaBI	GATNNNNATC	2 cut(s)	106, 138
BsaJI	CCNNGG	2 cut(s)	772, 942
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse8I	GATNNNNATC	2 cut(s)	106, 138
BseDI	CCNNGG	2 cut(s)	772, 942
BseGI	GGATG	3 cut(s)	156, 171, 378
BseJI	GATNNNNATC	2 cut(s)	106, 138
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	3 cut(s)	168, 426, 464
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	541, 629
BseYI	CCCAGC	1 cut(s)	815
BshFI	GGCC	2 cut(s)	737, 933
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	2 cut(s)	143, 773
BsiSI	CCGG	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	2 cut(s)	601, 941
BsmBI	CGTCTC	1 cut(s)	941
BsnI	GGCC	2 cut(s)	737, 933
BsoBI	CYCGRG	2 cut(s)	143, 773
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	914
Bsp143I	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
BspACI	CCGC	7 cut(s)	285, 460, 495, 498, 524, 620, 800
BspANI	GGCC	2 cut(s)	737, 933
BspCNI	CTCAG	3 cut(s)	169, 427, 463
BspOI	GCTAGC	1 cut(s)	536
BspPI	GGATC	4 cut(s)	109, 433, 693, 763
BspTI	CTTAAG	1 cut(s)	517
BsrBI	CCGCTC	1 cut(s)	800
BsrGI	TGTACA	1 cut(s)	914
BssECI	CCNNGG	2 cut(s)	772, 942
BssMI	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
Bst4CI	ACNGT	5 cut(s)	215, 347, 640, 881, 922
Bst6I	CTCTTC	1 cut(s)	570
BstAFI	CTTAAG	1 cut(s)	517
BstAUI	TGTACA	1 cut(s)	914
BstBAI	YACGTR	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	534, 813
BstDEI	CTNAG	6 cut(s)	177, 193, 435, 450, 509, 746
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	3 cut(s)	156, 171, 378
BstKTI	GATC	8 cut(s)	48, 104, 209, 301, 441, 688, 771, 865
BstMAI	GTCTC	2 cut(s)	601, 941
BstMBI	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 302, 641
BstNSI	RCATGY	2 cut(s)	557, 915
BstV1I	GCAGC	2 cut(s)	541, 629
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	3 cut(s)	101, 438, 768
BstYI	RGATCY	3 cut(s)	101, 438, 768
BsuRI	GGCC	2 cut(s)	737, 933
BtgI	CCRYGG	1 cut(s)	942
BtgZI	GCGATG	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	156, 171, 378
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	534, 813
Cfr13I	GGNCC	1 cut(s)	932
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	791, 915
CviAII	CATG	3 cut(s)	554, 842, 912
CviQI	GTAC	2 cut(s)	791, 915
DdeI	CTNAG	6 cut(s)	177, 193, 435, 450, 509, 746
DpnI	GATC	8 cut(s)	47, 103, 208, 300, 440, 687, 770, 864
DpnII	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	468
Eco72I	CACGTG	1 cut(s)	339
Eco88I	CYCGRG	2 cut(s)	143, 773
EcoICRI	GAGCTC	1 cut(s)	181
EcoT22I	ATGCAT	2 cut(s)	843, 913
EcoT38I	GRGCYC	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	941
FaeI	CATG	3 cut(s)	557, 845, 915
FatI	CATG	3 cut(s)	553, 841, 911
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	285, 496, 530, 618
FokI	GGATG	3 cut(s)	158, 163, 385
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	4 cut(s)	285, 496, 530, 618
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	4 cut(s)	285, 496, 530, 618
GsaI	CCCAGC	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	737, 933
HapII	CCGG	1 cut(s)	788
HgaI	GACGC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	557, 845, 915
HincII	GTYRAC	3 cut(s)	249, 386, 889
HindII	GTYRAC	3 cut(s)	249, 386, 889
HindIII	AAGCTT	2 cut(s)	236, 824
HinfI	GANTC	4 cut(s)	134, 448, 479, 778
HpaI	GTTAAC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	3 cut(s)	227, 278, 299
Hpy166II	GTNNAC	3 cut(s)	249, 386, 889
Hpy188I	TCNGA	2 cut(s)	82, 665
Hpy188III	TCNNGA	5 cut(s)	131, 143, 695, 775, 875
Hpy8I	GTNNAC	3 cut(s)	249, 386, 889
Hpy99I	CGWCG	4 cut(s)	207, 473, 870, 876
HpyCH4III	ACNGT	5 cut(s)	215, 347, 640, 881, 922
HpyCH4IV	ACGT	2 cut(s)	338, 675
HpyCH4V	TGCA	6 cut(s)	160, 332, 503, 553, 841, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 302, 641
HpyF3I	CTNAG	6 cut(s)	177, 193, 435, 450, 509, 746
HpySE526I	ACGT	2 cut(s)	338, 675
Hsp92II	CATG	3 cut(s)	557, 845, 915
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
LmnI	GCTCC	2 cut(s)	526, 797
LpnPI	CCDG	4 cut(s)	189, 471, 801, 801
Lsp1109I	GCAGC	2 cut(s)	541, 629
LweI	GCATC	4 cut(s)	180, 512, 828, 898
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	338, 675
MaeIII	GTNAC	3 cut(s)	426, 445, 875
MalI	GATC	8 cut(s)	47, 103, 208, 300, 440, 687, 770, 864
MbiI	CCGCTC	1 cut(s)	800
MboI	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
MflI	RGATCY	3 cut(s)	101, 438, 768
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	4 cut(s)	277, 366, 561, 967
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	3 cut(s)	80, 727, 782
Mph1103I	ATGCAT	2 cut(s)	843, 913
MseI	TTAA	2 cut(s)	248, 518
MslI	CAYNNNNRTG	2 cut(s)	216, 337
MspA1I	CMGCKG	1 cut(s)	620
MspCI	CTTAAG	1 cut(s)	517
MspI	CCGG	1 cut(s)	788
MwoI	GCNNNNNNNGC	3 cut(s)	293, 302, 641
NdeII	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	3 cut(s)	557, 845, 915
NmuCI	GTSAC	3 cut(s)	426, 445, 875
NsiI	ATGCAT	2 cut(s)	843, 913
NspI	RCATGY	2 cut(s)	557, 915
OliI	CACNNNNGTG	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	474, 871
PfeI	GAWTC	3 cut(s)	134, 479, 778
PkrI	GCNGC	4 cut(s)	286, 497, 531, 619
PleI	GAGTC	1 cut(s)	442
PmaCI	CACGTG	1 cut(s)	339
PmlI	CACGTG	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	442
Ppu21I	YACGTR	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	815
PspPI	GGNCC	1 cut(s)	932
PsuI	RGATCY	3 cut(s)	101, 438, 768
RsaI	GTAC	2 cut(s)	792, 916
RsaNI	GTAC	2 cut(s)	791, 915
RseI	CAYNNNNRTG	2 cut(s)	216, 337
SacI	GAGCTC	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	248, 518
SatI	GCNGC	4 cut(s)	285, 496, 530, 618
Sau3AI	GATC	8 cut(s)	45, 101, 206, 298, 438, 685, 768, 862
Sau96I	GGNCC	1 cut(s)	932
SchI	GAGTC	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	4 cut(s)	180, 512, 828, 898
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	216, 337
SmlI	CTYRAG	4 cut(s)	129, 143, 517, 598
SmoI	CTYRAG	4 cut(s)	129, 143, 517, 598
Sse9I	AATT	4 cut(s)	277, 366, 561, 967
SsiI	CCGC	7 cut(s)	285, 460, 495, 498, 524, 620, 800
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	183
TaaI	ACNGT	5 cut(s)	215, 347, 640, 881, 922
TaiI	ACGT	2 cut(s)	341, 678
TaqI	TCGA	9 cut(s)	120, 144, 320, 385, 468, 696, 732, 836, 906
TasI	AATT	4 cut(s)	277, 366, 561, 967
TatI	WGTACW	1 cut(s)	914
TauI	GCSGC	2 cut(s)	287, 498
TfiI	GAWTC	3 cut(s)	134, 479, 778
Tru1I	TTAA	2 cut(s)	248, 518
Tru9I	TTAA	2 cut(s)	248, 518
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	3 cut(s)	426, 445, 875
TseI	GCWGC	2 cut(s)	529, 617
Tsp45I	GTSAC	3 cut(s)	426, 445, 875
TspDTI	ATGAA	4 cut(s)	17, 96, 234, 818
TspGWI	ACGGA	2 cut(s)	431, 959
TspRI	CASTG	1 cut(s)	643
Vha464I	CTTAAG	1 cut(s)	517
XceI	RCATGY	2 cut(s)	557, 915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XhoI	CTCGAG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	385
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	2 cut(s)	843, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.