Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

3010803 .. 3011678

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G062800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCAAGCAGAGACAGAGAGCAATCCAAATGTTGCTTCAAAGAGTGGATGGAGCTTCAAGAACAAGACCTCTCAGAGCTCCTCCAAGCCCTGAAACTAGACCCCCAAAACAAAGACCAGTTAAAACATTTAGCAGAGAAAGGCATCTGTCACTTCCAAGATTACATAAACAAGAGAACCCAACTTGCCCGCAGAGACGTCTCTGCCTTCTTTGCCCCCACTTGGTGCACTTCATGGGAAAACTCTCTGCTTTGGATCGCTGGCTGCAGACCCTCTTTGTTTTTCAGGCTCGTCTATGTGCTTGGCGGGTCAAAAATGGAGTCAAAGCTCTCTGAGTTCCTCCAAGACACAAGAGAAGGCAGCCTTGGTGAGGTTCTGACGTGCTCGCAGCTCGTTGTGGTCAACAGTTTGCAGAGCAAGACCATTAGAGAGGAGGAGAGGTTGACAGGGGAGCTGGCAGCTCTGCAAGAGGACATAGCAGACCAGCCAATTGCAATGATTGCAAAGGGTTTGAGCCAACTTGGGGAGATGAACAGAGAAGTGGAGGAGGCTCTGGATGAGCATGGCCAAGCCATGGTGAGAATTTTGGAGGAGGCAGATCAGTTGAGGCTAAACACTGTCAAGGAGCTTGTGAACATATTGACACCTCTTCAGGCTGTTGATTTTCTGGTGGCAAGTAAGAAGCTTCACTTGTGTGTGCATAAGTGGGGCAGGAACAGAGACCAAAAGCTTGGGAGGGAAAATCTGGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

252

Amino Acids

28.77

Weight (kDa)

5.32

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccB7I	CCANNNNNTGG	1 cut(s)	574
AciI	CCGC	2 cut(s)	190, 306
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	222, 370, 523, 574
AgsI	TTSAA	2 cut(s)	40, 59
AjiI	CACGTC	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 348, 380
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	9 cut(s)	55, 79, 328, 391, 454, 461, 628, 685, 730
AluI	AGCT	9 cut(s)	55, 79, 328, 391, 454, 461, 628, 685, 730
Alw21I	GWGCWC	3 cut(s)	81, 230, 386
Alw26I	GTCTC	4 cut(s)	6, 189, 205, 714
Alw44I	GTGCAC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	4 cut(s)	264, 360, 388, 458
ApoI	RAATTY	1 cut(s)	582
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AsuHPI	GGTGA	2 cut(s)	380, 589
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	3 cut(s)	81, 230, 386
BbvI	GCAGC	4 cut(s)	251, 372, 400, 470
BccI	CCATC	1 cut(s)	43
BcoDI	GTCTC	4 cut(s)	6, 189, 205, 714
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	4 cut(s)	265, 361, 389, 459
BlsI	GCNGC	4 cut(s)	266, 362, 390, 460
BmgBI	CACGTC	1 cut(s)	381
BmsI	GCATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	2 cut(s)	364, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 370, 523, 574
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	364, 573
BseGI	GGATG	2 cut(s)	54, 562
BseLI	CCNNNNNNNGG	4 cut(s)	222, 370, 523, 574
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	87, 324
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	5 cut(s)	71, 446, 449, 560, 605
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	4 cut(s)	251, 372, 400, 470
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	3 cut(s)	81, 230, 386
BslI	CCNNNNNNNGG	4 cut(s)	222, 370, 523, 574
BsmAI	GTCTC	4 cut(s)	6, 189, 205, 714
BsmBI	CGTCTC	2 cut(s)	189, 205
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	1 cut(s)	714
Bsp1286I	GDGCHC	3 cut(s)	81, 230, 386
Bsp143I	GATC	2 cut(s)	255, 598
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	2 cut(s)	190, 306
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	2 cut(s)	86, 325
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	364, 573
BssMI	GATC	2 cut(s)	255, 598
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	364, 573
Bst4CI	ACNGT	2 cut(s)	407, 619
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	5 cut(s)	7, 190, 262, 386, 456
BstDEI	CTNAG	2 cut(s)	73, 333
BstDSI	CCRYGG	1 cut(s)	573
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	54, 562
BstKTI	GATC	2 cut(s)	258, 601
BstMAI	GTCTC	4 cut(s)	6, 189, 205, 714
BstMBI	GATC	2 cut(s)	255, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 500
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	4 cut(s)	251, 372, 400, 470
BstXI	CCANNNNNNTGG	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	54, 562
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	5 cut(s)	7, 190, 262, 386, 456
CviAII	CATG	3 cut(s)	234, 563, 574
DdeI	CTNAG	2 cut(s)	73, 333
DpnI	GATC	2 cut(s)	257, 600
DpnII	GATC	2 cut(s)	255, 598
DraIII	CACNNNGTG	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	364, 573
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	714
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoT14I	CCWWGG	2 cut(s)	364, 573
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	364, 573
Esp3I	CGTCTC	2 cut(s)	189, 205
FaeI	CATG	3 cut(s)	237, 566, 577
FaiI	YATR	8 cut(s)	167, 235, 297, 476, 564, 575, 638, 702
FalI	AAGNNNNNCTT	4 cut(s)	348, 380, 674, 706
FatI	CATG	3 cut(s)	233, 562, 573
FauI	CCCGC	2 cut(s)	197, 299
Fnu4HI	GCNGC	4 cut(s)	265, 361, 389, 459
FokI	GGATG	2 cut(s)	61, 569
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	265, 361, 389, 459
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	4 cut(s)	265, 361, 389, 459
HaeIII	GGCC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	237, 566, 577
HincII	GTYRAC	2 cut(s)	403, 444
HindII	GTYRAC	2 cut(s)	403, 444
HindIII	AAGCTT	2 cut(s)	683, 728
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	380, 589
Hpy166II	GTNNAC	4 cut(s)	228, 403, 444, 634
Hpy188I	TCNGA	3 cut(s)	76, 334, 378
Hpy188III	TCNNGA	3 cut(s)	59, 554, 746
Hpy8I	GTNNAC	4 cut(s)	228, 403, 444, 634
HpyAV	CCTTC	2 cut(s)	217, 350
HpyCH4III	ACNGT	2 cut(s)	407, 619
HpyCH4IV	ACGT	2 cut(s)	198, 380
HpyCH4V	TGCA	7 cut(s)	228, 267, 412, 466, 494, 503, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 500
HpyF3I	CTNAG	2 cut(s)	73, 333
HpySE526I	ACGT	2 cut(s)	198, 380
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	237, 566, 577
Kzo9I	GATC	2 cut(s)	255, 598
LmnI	GCTCC	4 cut(s)	52, 84, 451, 625
Lsp1109I	GCAGC	4 cut(s)	251, 372, 400, 470
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	198, 380
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	257, 600
MboI	GATC	2 cut(s)	255, 598
MboII	GAAGA	1 cut(s)	641
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	81, 230, 386
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	2 cut(s)	489, 582
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	329
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	122, 754
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	567
MunI	CAATTG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	212, 500
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	255, 598
NlaIII	CATG	3 cut(s)	237, 566, 577
NmuCI	GTSAC	1 cut(s)	149
OliI	CACNNNNGTG	1 cut(s)	693
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	266, 362, 390, 460
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	122, 754
SatI	GCNGC	4 cut(s)	265, 361, 389, 459
Sau3AI	GATC	2 cut(s)	255, 598
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	81, 230, 386
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	2 cut(s)	489, 582
SsiI	CCGC	2 cut(s)	190, 306
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	364, 573
TaaI	ACNGT	2 cut(s)	407, 619
TaiI	ACGT	2 cut(s)	201, 383
TasI	AATT	2 cut(s)	489, 582
Tru1I	TTAA	2 cut(s)	122, 754
Tru9I	TTAA	2 cut(s)	122, 754
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	4 cut(s)	264, 360, 388, 458
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	222, 545
TspRI	CASTG	1 cut(s)	622
Van91I	CCANNNNNTGG	1 cut(s)	574
VneI	GTGCAC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	582
XspI	CTAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.