Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Reverse (-)

87035735 .. 87036496

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAAGCGGTGACAGAGAAGAATCCAAATGCTGCTTCAAAGAATGGATGACAACCCAAGAGAAAGACCTCTCGGAGCTTTTCCAAGCTCTCACCGTCGAGCCGGAAAACATAGACCAACTTAAACAGCTCGCCGAGAAGAGCATCACTCACTTCCAGGACTACATCAAAAAGCGTAACAAACTCGCCCACAAAGACATCTCTGCCTACTTTGCACCCAACTGGTGCTCTCCCTGGGAGAACTCTCTTCTCTGGATCGCCGGCTGCCGCCCTTCCTTATTTTTCCGCCTCGTGTACGCCCTCAGCGGCTCGGAAGTCGAGTCCAAGCTCACCGAGTTCCTCGGTGGCACGAAAGAGGGGTACCTCGGCGAGGTCATGAGCTCCAGACAGCTTCTGATGATCAACGCCTTGCAGAGCAAGACAATAAGCGAGGAAGAGGGGCTGACGATGAAGCTGGCGGCTCTGCAGGAGGACATAGCGGACCAGCCGATTGCGATGATTGCGAAAGGGCTGAGCAAAGTTGGGGAGATGAACGGGGAGGTGGAAAAGGTTCTGGATAATCATGGTCGACAAATGGTCAAGGTTTTGGAGGAGGCAGATGGGCTGAGGATGAACACGCTTAAGGAGCTTGTGAAGATATTGAGTCCTCTTCAGGCAGTGGATTTTCTGGTGGCGAGTAAGAAGCTTCATCTCTGTGTGCATAATTGGGGAAGGCAGAGGGATCAGAAGCTTGGGAGGAAAGAAAGCGATGAGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

253

Amino Acids

28.7

Weight (kDa)

5.55

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	24 - 100	6.9e-25	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	568
AciI	CCGC	6 cut(s)	9, 268, 286, 306, 458, 479
AclWI	GGATC	2 cut(s)	263, 729
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	296, 362
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	156, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
Alw21I	GWGCWC	2 cut(s)	230, 383
AlwI	GGATC	2 cut(s)	263, 729
AlwNI	CAGNNNCTG	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	33, 264
Asp700I	GAANNNNTTC	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	3 cut(s)	23, 85, 322
AvaII	GGWCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	383
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	230, 383
BbvCI	CCTCAGC	2 cut(s)	302, 605
BbvI	GCAGC	2 cut(s)	20, 251
BccI	CCATC	1 cut(s)	593
BciT130I	CCWGG	2 cut(s)	158, 235
BclI	TGATCA	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	464
BfrI	CTTAAG	1 cut(s)	620
BisI	GCNGC	5 cut(s)	34, 265, 268, 307, 459
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	5 cut(s)	35, 266, 269, 308, 460
Bme1390I	CCNGG	2 cut(s)	158, 235
Bme18I	GGWCC	1 cut(s)	481
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	2 cut(s)	158, 235
BmsI	GCATC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	2 cut(s)	302, 605
Bpu1102I	GCTNAGC	1 cut(s)	512
BsaJI	CCNNGG	4 cut(s)	233, 234, 340, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	158, 235
BseDI	CCNNGG	4 cut(s)	233, 234, 340, 364
BseGI	GGATG	2 cut(s)	54, 615
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	3 cut(s)	316, 503, 596
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	20, 251
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	230, 383
BsiSI	CCGG	2 cut(s)	104, 261
BslI	CCNNNNNNNGG	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	230, 383
Bsp143I	GATC	3 cut(s)	255, 399, 721
Bsp1720I	GCTNAGC	1 cut(s)	512
BspACI	CCGC	6 cut(s)	9, 268, 286, 306, 458, 479
BspCNI	CTCAG	3 cut(s)	315, 504, 597
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	263, 729
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	233, 234, 340, 364
BssMI	GATC	3 cut(s)	255, 399, 721
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	158, 235
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	4 cut(s)	134, 252, 429, 654
BstAFI	CTTAAG	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	7, 132, 262, 456
BstDEI	CTNAG	3 cut(s)	302, 512, 605
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	54, 615
BstKTI	GATC	3 cut(s)	258, 402, 724
BstMBI	GATC	3 cut(s)	255, 399, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 500, 625
BstNI	CCWGG	2 cut(s)	158, 235
BstSCI	CCNGG	2 cut(s)	156, 233
BstSFI	CTRYAG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	20, 251
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	54, 615
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	4 cut(s)	7, 132, 262, 456
CaiI	CAGNNNCTG	1 cut(s)	394
CciI	TCATGA	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	295, 361
CviAII	CATG	2 cut(s)	376, 563
CviQI	GTAC	2 cut(s)	295, 361
DdeI	CTNAG	3 cut(s)	302, 512, 605
DpnI	GATC	3 cut(s)	257, 401, 723
DpnII	GATC	3 cut(s)	255, 399, 721
DriI	GACNNNNNGTC	1 cut(s)	575
Eam1104I	CTCTTC	4 cut(s)	134, 252, 429, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	575
EarI	CTCTTC	4 cut(s)	134, 252, 429, 654
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	156, 233
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	2 cut(s)	379, 566
FaiI	YATR	5 cut(s)	113, 377, 476, 564, 702
FatI	CATG	2 cut(s)	375, 562
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	34, 265, 268, 307, 459
FokI	GGATG	2 cut(s)	61, 622
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	34, 265, 268, 307, 459
GluI	GCNGC	5 cut(s)	34, 265, 268, 307, 459
GsuI	CTGGAG	1 cut(s)	367
HapII	CCGG	2 cut(s)	104, 261
Hin1II	CATG	2 cut(s)	379, 566
HincII	GTYRAC	1 cut(s)	569
HindII	GTYRAC	1 cut(s)	569
HindIII	AAGCTT	2 cut(s)	683, 728
HinfI	GANTC	3 cut(s)	23, 320, 643
HpaII	CCGG	2 cut(s)	104, 261
HphI	GGTGA	3 cut(s)	23, 85, 322
Hpy166II	GTNNAC	2 cut(s)	295, 569
Hpy188I	TCNGA	4 cut(s)	76, 313, 396, 726
Hpy188III	TCNNGA	4 cut(s)	253, 376, 384, 554
Hpy8I	GTNNAC	2 cut(s)	295, 569
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	282, 705
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	4 cut(s)	215, 412, 466, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 500, 625
HpyF3I	CTNAG	3 cut(s)	302, 512, 605
Hsp92II	CATG	2 cut(s)	379, 566
KpnI	GGTACC	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	255, 399, 721
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	3 cut(s)	76, 386, 625
Lsp1109I	GCAGC	2 cut(s)	20, 251
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	11, 176
MalI	GATC	3 cut(s)	257, 401, 723
MboI	GATC	3 cut(s)	255, 399, 721
MboII	GAAGA	6 cut(s)	32, 151, 239, 446, 641, 646
MhlI	GDGCHC	2 cut(s)	230, 383
MluCI	AATT	1 cut(s)	703
MlyI	GAGTC	2 cut(s)	329, 652
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	3 cut(s)	123, 621, 760
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	2 cut(s)	104, 261
MspR9I	CCNGG	2 cut(s)	158, 235
MvaI	CCWGG	2 cut(s)	158, 235
MwoI	GCNNNNNNNGC	3 cut(s)	212, 500, 625
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	3 cut(s)	255, 399, 721
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	379, 566
NlaIV	GGNNCC	1 cut(s)	362
NmeAIII	GCCGAG	2 cut(s)	160, 345
NmuCI	GTSAC	1 cut(s)	11
PagI	TCATGA	1 cut(s)	375
PasI	CCCWGGG	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	35, 266, 269, 308, 460
PleI	GAGTC	2 cut(s)	328, 651
PpsI	GAGTC	2 cut(s)	328, 651
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	156, 233
PspGI	CCWGG	2 cut(s)	156, 233
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	296, 362
RsaNI	GTAC	2 cut(s)	295, 361
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	383
SalI	GTCGAC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	123, 621, 760
SatI	GCNGC	5 cut(s)	34, 265, 268, 307, 459
Sau3AI	GATC	3 cut(s)	255, 399, 721
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	329, 652
ScrFI	CCNGG	2 cut(s)	158, 235
SduI	GDGCHC	2 cut(s)	230, 383
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	1 cut(s)	703
SsiI	CCGC	6 cut(s)	9, 268, 286, 306, 458, 479
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	156, 233
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	99, 318, 568
TasI	AATT	1 cut(s)	703
TauI	GCSGC	3 cut(s)	270, 309, 461
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	123, 621, 760
Tru9I	TTAA	3 cut(s)	123, 621, 760
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	33, 264
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	464, 545, 626, 677
TspRI	CASTG	1 cut(s)	663
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.