Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Reverse (-)

4496734 .. 4497495

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAAGCGGTGACAGAAAGGAATCCAAATGCTGCTTCAAAGAATGGATGGAAACCCAAGAGAGAGACCTGACGGAGCTTCTACAAGCTGTCACCGTCGAGCCGGAAAACATAGAGCAACTCAAACAACTCGCCGGGAAATGCATCACGCACTTCGAGGACTACATCAAAAAGCGTAACAAACTCGCCCACAAGGACATCTCCGCCTACTTTGCACCCGACTGGTGCTCTCCCTGGGAGAACTCTCTTATCTGGATCGCCGGCTGCCGCCCTTCCTTGTTCTTCCGCCTCATCTACGCCCTCAGCGGCTCGGAAGTGGAGTCCAACCTCACCGAGTTCCTCCGCGGCACGAAAAACGGGTACCTCGGCGAGGTCATGAGCTCAACGCAGCTTGTGATGGTGAATGCGTTGCAGAGCAAGACAATAAGCGAGGAAGAGAGGCTGACGATGAGGCTGGCGGCTCTGCAGGAGGACATAGCGGACCAGCCGATTGCGATGATTGCAAAAGGGCTGAGCAAAGTTGGGGAGATGAATGAAGAGGTGGAGAAGGCTCTGGATGATCATGGTCAACATATGGTCAAGCTTTTGGAGGAGGCAGATGAGCTGAGGATGAACACGCTGAAGGAGGTTTTGAAGATACTGACTCCTCTTCAGGGTGTGGATTTTCTGGTGGCGAGTAAGAAGCTTCATCTCTGTGTGCATAAGTGGGGAAGGCAGAGGGATCAGAAGCATGGGAGGGTTGAAAGCGATGAAGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

254

Amino Acids

28.87

Weight (kDa)

5.41

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	24 - 100	1.1e-24	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	1 cut(s)	345
AciI	CCGC	9 cut(s)	9, 204, 268, 286, 306, 343, 345, 458, 479
AclWI	GGATC	2 cut(s)	263, 729
AcuI	CTGAAG	2 cut(s)	635, 641
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	370, 653
AgsI	TTSAA	3 cut(s)	40, 634, 743
AjnI	CCWGG	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	7 cut(s)	79, 89, 381, 391, 583, 604, 685
AluI	AGCT	7 cut(s)	79, 89, 381, 391, 583, 604, 685
Alw21I	GWGCWC	2 cut(s)	230, 383
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	263, 729
ApeKI	GCWGC	3 cut(s)	33, 264, 388
Asp718I	GGTACC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	4 cut(s)	23, 85, 322, 412
AvaII	GGWCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	230, 383
BbvCI	CCTCAGC	2 cut(s)	302, 605
BbvI	GCAGC	3 cut(s)	20, 251, 400
BccI	CCATC	2 cut(s)	43, 391
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	7 cut(s)	34, 265, 268, 307, 346, 389, 459
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	7 cut(s)	35, 266, 269, 308, 347, 390, 460
Bme1390I	CCNGG	2 cut(s)	136, 235
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	2 cut(s)	136, 235
BmsI	GCATC	1 cut(s)	153
Bpu10I	CCTNAGC	2 cut(s)	302, 605
Bpu1102I	GCTNAGC	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	233, 234, 343, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 653
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	4 cut(s)	233, 234, 343, 364
BseGI	GGATG	3 cut(s)	54, 562, 615
BseLI	CCNNNNNNNGG	2 cut(s)	370, 653
BseMII	CTCAG	3 cut(s)	316, 503, 596
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	605, 636
BseXI	GCAGC	3 cut(s)	20, 251, 400
Bsh1236I	CGCG	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	230, 383
BsiSI	CCGG	3 cut(s)	104, 135, 261
BslI	CCNNNNNNNGG	2 cut(s)	370, 653
BsmAI	GTCTC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	409
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	230, 383
Bsp143I	GATC	3 cut(s)	255, 559, 721
Bsp1720I	GCTNAGC	1 cut(s)	512
BspACI	CCGC	9 cut(s)	9, 204, 268, 286, 306, 343, 345, 458, 479
BspCNI	CTCAG	3 cut(s)	315, 504, 597
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	263, 729
BspT107I	GGYRCC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	233, 234, 343, 364
BssMI	GATC	3 cut(s)	255, 559, 721
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	3 cut(s)	429, 531, 654
BstC8I	GCNNGC	3 cut(s)	7, 262, 456
BstDEI	CTNAG	3 cut(s)	302, 512, 605
BstDSI	CCRYGG	1 cut(s)	343
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	54, 562, 615
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	258, 562, 724
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	255, 559, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 500
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	134, 233
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	20, 251, 400
BtgI	CCRYGG	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	54, 562, 615
Cac8I	GCNNGC	3 cut(s)	7, 262, 456
CciI	TCATGA	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	481
Cfr42I	CCGCGG	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	376, 563, 731
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	302, 512, 605
DpnI	GATC	3 cut(s)	257, 561, 723
DpnII	GATC	3 cut(s)	255, 559, 721
Eam1104I	CTCTTC	3 cut(s)	429, 531, 654
EarI	CTCTTC	3 cut(s)	429, 531, 654
EciI	GGCGGA	2 cut(s)	193, 275
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	2 cut(s)	635, 641
EcoICRI	GAGCTC	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	3 cut(s)	379, 566, 734
FaiI	YATR	8 cut(s)	113, 377, 476, 564, 573, 575, 702, 732
FatI	CATG	3 cut(s)	375, 562, 730
FauNDI	CATATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	7 cut(s)	34, 265, 268, 307, 346, 389, 459
FokI	GGATG	3 cut(s)	61, 569, 622
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	7 cut(s)	34, 265, 268, 307, 346, 389, 459
GluI	GCNGC	7 cut(s)	34, 265, 268, 307, 346, 389, 459
HapII	CCGG	3 cut(s)	104, 135, 261
Hin1II	CATG	3 cut(s)	379, 566, 734
HincII	GTYRAC	1 cut(s)	569
HindII	GTYRAC	1 cut(s)	569
HindIII	AAGCTT	2 cut(s)	581, 683
HinfI	GANTC	3 cut(s)	23, 320, 643
HpaII	CCGG	3 cut(s)	104, 135, 261
HphI	GGTGA	4 cut(s)	23, 85, 322, 412
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	2 cut(s)	313, 726
Hpy188III	TCNNGA	3 cut(s)	253, 376, 554
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	5 cut(s)	282, 541, 616, 705, 746
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	6 cut(s)	144, 215, 412, 466, 503, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 500
HpyF3I	CTNAG	3 cut(s)	302, 512, 605
Hsp92II	CATG	3 cut(s)	379, 566, 734
KpnI	GGTACC	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	559
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	255, 559, 721
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	3 cut(s)	20, 251, 400
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	11, 91, 176
MalI	GATC	3 cut(s)	257, 561, 723
MboI	GATC	3 cut(s)	255, 559, 721
MboII	GAAGA	5 cut(s)	274, 446, 548, 641, 646
MhlI	GDGCHC	2 cut(s)	230, 383
MlyI	GAGTC	2 cut(s)	329, 637
MmeI	TCCRAC	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	260
MseI	TTAA	1 cut(s)	760
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	2 cut(s)	306, 345
MspI	CCGG	3 cut(s)	104, 135, 261
MspR9I	CCNGG	2 cut(s)	136, 235
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	212, 500
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	136
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	3 cut(s)	255, 559, 721
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	379, 566, 734
NlaIV	GGNNCC	1 cut(s)	362
NmeAIII	GCCGAG	1 cut(s)	345
NmuCI	GTSAC	2 cut(s)	11, 91
NsiI	ATGCAT	1 cut(s)	146
PagI	TCATGA	1 cut(s)	375
PasI	CCCWGGG	1 cut(s)	234
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	7 cut(s)	35, 266, 269, 308, 347, 390, 460
PleI	GAGTC	2 cut(s)	328, 637
PpsI	GAGTC	2 cut(s)	328, 637
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	468
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	383
SacII	CCGCGG	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	760
SatI	GCNGC	7 cut(s)	34, 265, 268, 307, 346, 389, 459
Sau3AI	GATC	3 cut(s)	255, 559, 721
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	329, 637
ScrFI	CCNGG	2 cut(s)	136, 235
SduI	GDGCHC	2 cut(s)	230, 383
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	464
Sfr303I	CCGCGG	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	693
SsiI	CCGC	9 cut(s)	9, 204, 268, 286, 306, 343, 345, 458, 479
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	134, 233
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	99, 156
TauI	GCSGC	4 cut(s)	270, 309, 348, 461
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	760
Tru9I	TTAA	1 cut(s)	760
TseFI	GTSAC	2 cut(s)	11, 91
TseI	GCWGC	3 cut(s)	33, 264, 388
Tsp45I	GTSAC	2 cut(s)	11, 91
TspDTI	ATGAA	4 cut(s)	545, 549, 626, 677
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.