Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007369

Physical Location & Seq

Genomic Coordinates Forward (+)

10282762 .. 10283803

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGACTAGTTCTTCGAGTTATGGGATTGAACAACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTGCAGGCTAAACACATAGTTGATCTCAAAGAAGCACTCATGAGTCATCGATCCAAAGAAGATCACAAGCTTGAAGAACTCGTTGGTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCTGAGCTCTCTCGCCGAAGCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTCCTCTAGAGAACGGTTTACTATGGATGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAGCCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGATGAAAATGTCGAAGTAAACCATGGTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTGCAAAAATCAATGATTTGCATATAAAGGTTATAGAGAAAGAGGACAAGATAACAAAGAAATCGGCGAATTTGCAAGAGAATGTTGCGGATATGCCTATAGCCATCGCGGCTTATGCCACGGACTTGATGAATGGTGACGTGGTGGTGGAAGATGCTTTAGATAAGTATGAGGAGGGCATGGCGGTTTTAATGGTGGAAGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATCGTGGATGTTGTTACGCCGGTTCAAGCGGCGGAGTTTTTGCTCGCAGGGAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAGAAGAGCAACGTTTTGGGTGTGTACGTACGGATGCAGCGGCTGCCACGGGAGGAGCGGGAACCGAGAAGTCAAAGAGGTCAAGCTTGTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010162 GO:0010182 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0042221 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071695 GO:0080050 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:2000026 GO:2000033 GO:2000034 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

282

Amino Acids

31.54

Weight (kDa)

5.87

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	29 - 106	8.1e-26	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18660 AT4G18680 AT4G18690 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830 AT5G45830
fragaria_vesca	FvH4_3g07640
malus_domestica	MD05G1299000.v1.1
prunus_persica	Prupe.4G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011041
rosa_laevigata	RLG00000031805
rosa_multiflora	Rmu_sc0003242.1_g000006 Rmu_sc0030776.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065360
rosa_rugosa	Rorug04G0454800.1
rosa_samantha	Rh5AG086900 Rh5BG081700 Rh5BG081800 Rh5CG094400 Rh5DG081500
rosa_wichuraiana	Rw0G000140 Rw0G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	809
AccII	CGCG	2 cut(s)	419, 536
AciI	CCGC	7 cut(s)	515, 536, 611, 689, 692, 791, 809
AclI	AACGTT	1 cut(s)	763
AclWI	GGATC	3 cut(s)	114, 321, 334
AcsI	RAATTY	1 cut(s)	496
AfaI	GTAC	2 cut(s)	777, 781
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	32, 41, 143, 686
AhlI	ACTAGT	1 cut(s)	8
AjiI	CACGTC	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AleI	CACNNNNGTG	1 cut(s)	238
AluBI	AGCT	8 cut(s)	139, 202, 216, 225, 346, 427, 629, 837
AluI	AGCT	8 cut(s)	139, 202, 216, 225, 346, 427, 629, 837
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	114, 321, 334
AlwNI	CAGNNNCTG	1 cut(s)	794
ApeKI	GCWGC	5 cut(s)	216, 343, 424, 788, 794
ApoI	RAATTY	1 cut(s)	496
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	203, 355, 436, 781, 800
BccI	CCATC	3 cut(s)	268, 298, 539
BcoDI	GTCTC	1 cut(s)	641
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 254
BfmI	CTRYAG	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	536
BisI	GCNGC	8 cut(s)	217, 344, 425, 537, 690, 789, 792, 795
BlsI	GCNGC	8 cut(s)	218, 345, 426, 538, 691, 790, 793, 796
BmgBI	CACGTC	1 cut(s)	568
BmiI	GGNNCC	3 cut(s)	328, 400, 814
BmsI	GCATC	2 cut(s)	571, 775
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	205
Bsa29I	ATCGAT	2 cut(s)	118, 369
BsaAI	YACGTR	1 cut(s)	779
BsaJI	CCNNGG	3 cut(s)	391, 546, 798
Bse118I	RCCGGY	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	728
BseCI	ATCGAT	2 cut(s)	118, 369
BseDI	CCNNGG	3 cut(s)	391, 546, 798
BseGI	GGATG	6 cut(s)	53, 69, 279, 287, 673, 790
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	3 cut(s)	189, 365, 629
BseRI	GAGGAG	3 cut(s)	240, 614, 819
BseXI	GCAGC	5 cut(s)	203, 355, 436, 781, 800
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	2 cut(s)	419, 536
BshVI	ATCGAT	2 cut(s)	118, 369
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	680
BsiWI	CGTACG	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	641
BsmBI	CGTCTC	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	7 cut(s)	515, 536, 611, 689, 692, 791, 809
BspCNI	CTCAG	3 cut(s)	190, 364, 630
BspDI	ATCGAT	2 cut(s)	118, 369
BspFNI	CGCG	2 cut(s)	419, 536
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	328, 400, 814
BspPI	GGATC	3 cut(s)	114, 321, 334
BspQI	GCTCTTC	1 cut(s)	750
BsrBI	CCGCTC	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	3 cut(s)	391, 546, 798
BssMI	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	237, 263
Bst6I	CTCTTC	2 cut(s)	739, 750
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	3 cut(s)	75, 429, 705
BstDEI	CTNAG	4 cut(s)	198, 351, 638, 653
BstDSI	CCRYGG	3 cut(s)	391, 546, 798
BstF5I	GGATG	6 cut(s)	53, 69, 279, 287, 673, 790
BstFNI	CGCG	2 cut(s)	419, 536
BstKTI	GATC	8 cut(s)	94, 122, 133, 197, 329, 369, 412, 663
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 222, 536, 542, 794
BstSFI	CTRYAG	1 cut(s)	525
BstSNI	TACGTA	1 cut(s)	779
BstUI	CGCG	2 cut(s)	419, 536
BstV1I	GCAGC	5 cut(s)	203, 355, 436, 781, 800
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu15I	ATCGAT	2 cut(s)	118, 369
BsuTUI	ATCGAT	2 cut(s)	118, 369
BtgI	CCRYGG	3 cut(s)	391, 546, 798
BtgZI	GCGATG	1 cut(s)	517
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	6 cut(s)	53, 69, 279, 287, 673, 790
Cac8I	GCNNGC	3 cut(s)	75, 429, 705
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	679
ClaI	ATCGAT	2 cut(s)	118, 369
CseI	GACGC	2 cut(s)	408, 658
Csp6I	GTAC	2 cut(s)	776, 780
CviAII	CATG	4 cut(s)	109, 392, 403, 607
CviQI	GTAC	2 cut(s)	776, 780
DdeI	CTNAG	4 cut(s)	198, 351, 638, 653
DpnI	GATC	8 cut(s)	93, 121, 132, 196, 328, 368, 411, 662
DpnII	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
Eam1104I	CTCTTC	2 cut(s)	739, 750
EarI	CTCTTC	2 cut(s)	739, 750
EciI	GGCGGA	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	202
Eco105I	TACGTA	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	4 cut(s)	112, 395, 406, 610
FatI	CATG	4 cut(s)	108, 391, 402, 606
FauI	CCCGC	1 cut(s)	802
Fnu4HI	GCNGC	8 cut(s)	217, 344, 425, 537, 690, 789, 792, 795
FokI	GGATG	6 cut(s)	60, 76, 286, 294, 680, 797
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	8 cut(s)	217, 344, 425, 537, 690, 789, 792, 795
FspBI	CTAG	2 cut(s)	9, 254
GluI	GCNGC	8 cut(s)	217, 344, 425, 537, 690, 789, 792, 795
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	2 cut(s)	408, 658
Hin1II	CATG	4 cut(s)	112, 395, 406, 610
HindIII	AAGCTT	2 cut(s)	137, 835
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	3 cut(s)	266, 388, 776
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	109, 254
Hpy8I	GTNNAC	3 cut(s)	266, 388, 776
Hpy99I	CGWCG	2 cut(s)	241, 424
HpyCH4III	ACNGT	2 cut(s)	237, 263
HpyCH4IV	ACGT	3 cut(s)	567, 763, 778
HpyCH4V	TGCA	7 cut(s)	73, 233, 431, 448, 502, 733, 788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 222, 536, 542, 794
HpyF3I	CTNAG	4 cut(s)	198, 351, 638, 653
HpySE526I	ACGT	3 cut(s)	567, 763, 778
Hsp92II	CATG	4 cut(s)	112, 395, 406, 610
Kzo9I	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	1 cut(s)	806
LpnPI	CCDG	3 cut(s)	59, 693, 693
Lsp1109I	GCAGC	5 cut(s)	203, 355, 436, 781, 800
LweI	GCATC	2 cut(s)	571, 775
MaeI	CTAG	2 cut(s)	9, 254
MaeII	ACGT	3 cut(s)	567, 763, 778
MaeIII	GTNAC	3 cut(s)	50, 563, 673
MalI	GATC	8 cut(s)	93, 121, 132, 196, 328, 368, 411, 662
MbiI	CCGCTC	1 cut(s)	809
MboI	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
MboII	GAAGA	8 cut(s)	6, 140, 155, 350, 590, 670, 756, 767
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	496
MluI	ACGCGT	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	8 cut(s)	261, 272, 463, 592, 595, 633, 797, 822
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	680
MvnI	CGCG	2 cut(s)	419, 536
MwoI	GCNNNNNNNGC	5 cut(s)	216, 222, 536, 542, 794
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
NlaIII	CATG	4 cut(s)	112, 395, 406, 610
NlaIV	GGNNCC	3 cut(s)	328, 400, 814
NmuCI	GTSAC	1 cut(s)	563
OliI	CACNNNNGTG	1 cut(s)	238
PagI	TCATGA	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	36
Pfl23II	CGTACG	1 cut(s)	779
PkrI	GCNGC	8 cut(s)	218, 345, 426, 538, 691, 790, 793, 796
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	763
PspLI	CGTACG	1 cut(s)	779
PspN4I	GGNNCC	3 cut(s)	328, 400, 814
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	2 cut(s)	777, 781
RsaNI	GTAC	2 cut(s)	776, 780
RseI	CAYNNNNRTG	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	8 cut(s)	217, 344, 425, 537, 690, 789, 792, 795
Sau3AI	GATC	8 cut(s)	91, 119, 130, 194, 326, 366, 409, 660
SchI	GAGTC	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	571, 775
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SnaBI	TACGTA	1 cut(s)	779
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	7 cut(s)	515, 536, 611, 689, 692, 791, 809
SspMI	CTAG	2 cut(s)	9, 254
SstI	GAGCTC	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	237, 263
TaiI	ACGT	3 cut(s)	570, 766, 781
TaqI	TCGA	4 cut(s)	17, 118, 369, 381
TasI	AATT	1 cut(s)	496
TauI	GCSGC	3 cut(s)	539, 692, 794
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	5 cut(s)	216, 343, 424, 788, 794
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	289, 387, 572
TspGWI	ACGGA	2 cut(s)	563, 797
XapI	RAATTY	1 cut(s)	496
XbaI	TCTAGA	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	9, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.