AT4G18890

BES1 BZR1 homolog protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006018
Physical Location & Seq
Forward (+)
10352386 .. 10355555
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18890.1

Sequence Viewer

Length: 855 bp
ATGACGTCGGGGACTAGAACGCCGACTTGGAAAGAGAGAGAGAACAACAAACGGCGAGAGCGGCGAAGACGAGCGATTGCGGCTAAGATCTTCGCAGGACTAAGGATTCATGGAAACTTCAAGCTCCCTAAACACTGCGACAACAATGAAGTCCTCAAAGCTTTATGCAATGAAGCTGGTTGGACTGTAGAAGACGACGGAACTACTTACCGCAAGGGATGCAAACCAATGGATCGAATGGACCTCATGAATGGTTCTACTTCAGCTAGTCCATGCTCATCGTATCAACATAGCCCTCGTGCTTCCTACAATCCAAGCCCTTCGTCTTCATCATTCCCGAGTCCTACAAACCCATTTGGTGATGCTAACTCACTAATCCCATGGCTCAAGAACCTCTCTTCAAACTCACCTTCCAAGCTTCCCTTCTTCCATGGAAATTCAATAAGCGCTCCCGTGACTCCGCCATTGGCTCGAAGCCCTACTCGTGATCAAGTAACCATCCCTGACTCTGGATGGCTCTCAGGAATGCAAACTCCGCAGAGCGGACCGTCTTCTCCTACTTTCAGTTTAGTTTCAAGAAACCCGTTTTTCGACAAAGAGGCTTTTAAAATGGGAGATTGTAATTCACCAATGTGGACTCCTGGACAAAGTGGAAACTGCTCTCCAGCTATTCCTGCTGGTGTTGATCAGAACTCTGATGTGCCAATGGCTGATGGAATGACGGCTGAGTTTGCGTTTGGTTGTAACGCAATGGCTGCGAATGGAATGGTGAAGCCTTGGGAAGGAGAAAGGATACATGGAGAATGTGTTTCAGATGATTTAGAACTTACACTTGGAAACTCAAGAACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

284

Amino Acids

30.91

Weight (kDa)

8.63

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 4 - 118 1.6e-58 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccBSI CCGCTC 2 cut(s) 61, 543
AciI CCGC 6 cut(s) 61, 80, 211, 461, 536, 543
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 509, 542, 782
AgsI TTSAA 4 cut(s) 121, 402, 441, 576
AjnI CCWGG 1 cut(s) 640
AjuI GAANNNNNNNTTGG 6 cut(s) 10, 42, 407, 439, 816, 848
AleI CACNNNNGTG 1 cut(s) 631
AluBI AGCT 6 cut(s) 124, 161, 176, 266, 418, 668
AluI AGCT 6 cut(s) 124, 161, 176, 266, 418, 668
AlwI GGATC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 337
Aor51HI AGCGCT 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 241, 545
AsuHPI GGTGA 4 cut(s) 371, 399, 618, 781
AvaI CYCGRG 1 cut(s) 337
AvaII GGWCC 2 cut(s) 241, 545
BauI CACGAG 2 cut(s) 297, 483
BbsI GAAGAC 4 cut(s) 73, 198, 318, 543
BbvI GCAGC 1 cut(s) 742
BccI CCATC 3 cut(s) 506, 507, 707
BceAI ACGGC 2 cut(s) 68, 738
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 786
BclI TGATCA 2 cut(s) 487, 685
BfaI CTAG 2 cut(s) 15, 267
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 450
BfuI GTATCC 1 cut(s) 786
BglII AGATCT 1 cut(s) 87
BisI GCNGC 3 cut(s) 62, 81, 756
BlsI GCNGC 3 cut(s) 63, 82, 757
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 2 cut(s) 241, 545
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 2 cut(s) 241, 545
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 2 cut(s) 209, 352
BpiI GAAGAC 4 cut(s) 73, 198, 318, 543
BpmI CTGGAG 1 cut(s) 648
BpuEI CTTGAG 2 cut(s) 371, 826
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 380, 430, 776
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 542, 782
Bse3DI GCAATG 2 cut(s) 175, 756
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 3 cut(s) 380, 430, 776
BseGI GGATG 3 cut(s) 224, 498, 518
BseLI CCNNNNNNNGG 3 cut(s) 509, 542, 782
BseMI GCAATG 2 cut(s) 175, 756
BseMII CTCAG 2 cut(s) 534, 717
BseXI GCAGC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 509, 542, 782
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 337
Bsp143I GATC 4 cut(s) 87, 232, 487, 685
Bsp19I CCATGG 2 cut(s) 380, 430
BspACI CCGC 6 cut(s) 61, 80, 211, 461, 536, 543
BspCNI CTCAG 2 cut(s) 533, 718
BspHI TCATGA 1 cut(s) 246
BspPI GGATC 1 cut(s) 240
BsrBI CCGCTC 2 cut(s) 61, 543
BsrDI GCAATG 2 cut(s) 175, 756
BssECI CCNNGG 3 cut(s) 380, 430, 776
BssMI GATC 4 cut(s) 87, 232, 487, 685
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 297, 483
BssT1I CCWWGG 3 cut(s) 380, 430, 776
Bst2BI CACGAG 2 cut(s) 297, 483
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 2 cut(s) 187, 549
Bst6I CTCTTC 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 219, 755
BstDEI CTNAG 4 cut(s) 84, 101, 520, 726
BstDSI CCRYGG 2 cut(s) 380, 430
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 224, 498, 518
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 4 cut(s) 90, 235, 490, 688
BstMBI GATC 4 cut(s) 87, 232, 487, 685
BstMWI GCNNNNNNNGC 7 cut(s) 61, 80, 219, 535, 674, 731, 755
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 742
BstV2I GAAGAC 4 cut(s) 73, 198, 318, 543
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuI GTATCC 1 cut(s) 786
BtgI CCRYGG 2 cut(s) 380, 430
BtsCI GGATG 3 cut(s) 224, 498, 518
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 241, 545
CpoI CGGWCCG 1 cut(s) 545
CspI CGGWCCG 1 cut(s) 545
CviAII CATG 6 cut(s) 110, 247, 273, 381, 431, 797
DdeI CTNAG 4 cut(s) 84, 101, 520, 726
DpnI GATC 4 cut(s) 89, 234, 489, 687
DpnII GATC 4 cut(s) 87, 232, 487, 685
DraI TTTAAA 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
EciI GGCGGA 1 cut(s) 450
Eco130I CCWWGG 3 cut(s) 380, 430, 776
Eco47I GGWCC 2 cut(s) 241, 545
Eco47III AGCGCT 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 3 cut(s) 380, 430, 776
ErhI CCWWGG 3 cut(s) 380, 430, 776
FaeI CATG 6 cut(s) 113, 250, 276, 384, 434, 800
FaiI YATR 8 cut(s) 111, 166, 248, 274, 291, 382, 432, 798
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 25
FatI CATG 6 cut(s) 109, 246, 272, 380, 430, 796
FbaI TGATCA 2 cut(s) 487, 685
Fnu4HI GCNGC 3 cut(s) 62, 81, 756
FokI GGATG 3 cut(s) 231, 485, 525
Fsp4HI GCNGC 3 cut(s) 62, 81, 756
FspBI CTAG 2 cut(s) 15, 267
GlaI GCGC 1 cut(s) 448
GluI GCNGC 3 cut(s) 62, 81, 756
GsuI CTGGAG 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 450
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 113, 250, 276, 384, 434, 800
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HindIII AAGCTT 2 cut(s) 159, 416
HinfI GANTC 5 cut(s) 106, 340, 457, 506, 637
HphI GGTGA 4 cut(s) 371, 399, 618, 781
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 3 cut(s) 690, 697, 814
Hpy188III TCNNGA 8 cut(s) 247, 337, 388, 485, 510, 522, 576, 843
Hpy8I GTNNAC 1 cut(s) 636
Hpy99I CGWCG 2 cut(s) 10, 200
HpyAV CCTTC 4 cut(s) 330, 420, 433, 776
HpyCH4III ACNGT 2 cut(s) 187, 549
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 168, 222, 529
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 80, 219, 535, 674, 731, 755
HpyF3I CTNAG 4 cut(s) 84, 101, 520, 726
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 113, 250, 276, 384, 434, 800
HspAI GCGC 1 cut(s) 447
Ksp22I TGATCA 2 cut(s) 487, 685
Kzo9I GATC 4 cut(s) 87, 232, 487, 685
LmnI GCTCC 2 cut(s) 129, 454
Lsp1109I GCAGC 1 cut(s) 742
LweI GCATC 2 cut(s) 209, 352
MaeI CTAG 2 cut(s) 15, 267
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 3 cut(s) 454, 493, 743
MalI GATC 4 cut(s) 89, 234, 489, 687
MbiI CCGCTC 2 cut(s) 61, 543
MboI GATC 4 cut(s) 87, 232, 487, 685
MboII GAAGA 7 cut(s) 78, 82, 203, 318, 390, 418, 543
MflI RGATCY 1 cut(s) 87
MluCI AATT 2 cut(s) 436, 622
MlyI GAGTC 4 cut(s) 349, 451, 500, 631
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 5 cut(s) 164, 254, 306, 404, 592
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 1 cut(s) 631
MspR9I CCNGG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 7 cut(s) 61, 80, 219, 535, 674, 731, 755
NcoI CCATGG 2 cut(s) 380, 430
NdeII GATC 4 cut(s) 87, 232, 487, 685
NlaIII CATG 6 cut(s) 113, 250, 276, 384, 434, 800
NmuCI GTSAC 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 631
PagI TCATGA 1 cut(s) 246
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 3 cut(s) 63, 82, 757
PleI GAGTC 4 cut(s) 348, 451, 500, 631
PpsI GAGTC 4 cut(s) 348, 451, 500, 631
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspPI GGNCC 2 cut(s) 241, 545
PsuI RGATCY 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 631
Rsr2I CGGWCCG 1 cut(s) 545
RsrII CGGWCCG 1 cut(s) 545
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 3 cut(s) 62, 81, 756
Sau3AI GATC 4 cut(s) 87, 232, 487, 685
Sau96I GGNCC 2 cut(s) 241, 545
SchI GAGTC 4 cut(s) 349, 451, 500, 631
ScrFI CCNGG 1 cut(s) 642
SfaNI GCATC 2 cut(s) 209, 352
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 2 cut(s) 241, 545
SmiMI CAYNNNNRTG 1 cut(s) 631
SmlI CTYRAG 2 cut(s) 386, 841
SmoI CTYRAG 2 cut(s) 386, 841
Sse9I AATT 2 cut(s) 436, 622
SsiI CCGC 6 cut(s) 61, 80, 211, 461, 536, 543
SspMI CTAG 2 cut(s) 15, 267
StyD4I CCNGG 1 cut(s) 640
StyI CCWWGG 3 cut(s) 380, 430, 776
TaaI ACNGT 2 cut(s) 187, 549
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 235, 472, 591
TasI AATT 2 cut(s) 436, 622
TauI GCSGC 2 cut(s) 64, 83
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 1 cut(s) 140
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 5 cut(s) 98, 162, 186, 263, 318
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 241, 545
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 1 cut(s) 436
XspI CTAG 2 cut(s) 15, 267
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.