RLG00000031875

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006018
Physical Location & Seq
Forward (+)
8959250 .. 8961760
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031875

Sequence Viewer

Length: 987 bp
ATGACGTCGGGGACGAGAATGCCTACGTGGAAGGAGAGGGAGAACAACAAGAAGCGGGAGAGGAGGCGCCGCGCCATCGCCGCGAAGATCTACTCCGGCCTCCGCATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCAACGAGGCCGGTTGGACCGTCGAAGAAGACGGCACCACTTACCGAAAGGGATGCAAACCTGTGGATCGCATGGACATAATGGGAGGGTCGACATCAGCTAGTCCATGTTCATCATACCAACCGAGTCCATGTGCATCCTACAATCCGAGTCCATGTGCATCATACAATCCCAGTCCCGCCTCGTCTTCCTTCCCCAGTCCAGCTCGCTATCCAGCGAATGCAAACGGCAATGCTGATGCCAATTCTCTCATCCCATGGCTTAAAACCCTCTCATCGTCAGGCTCATCCTCTGCCACATCCAAGCTCCCGCAGCTGTTCATTCCAGGGGGCTCCATTAGTGCTCCAGTTACACCACCGCTGAGCTCCCCAACTTCGCGTACTCCTCGAACCAAAAGCGACTGGGATGAAGCTGTGGCTGGCTCAAACTGGGGTAGCCAGCATTATTCTTTCCTGCCCTCTTCCACCCCGCCAAGCCCCGGTCGCCAGGTTCTTCCTGATTCGGGATGGCTTGCCGGGCTCCAAAGCGGGCCATCATCCCCTACATTCAGCCTGGTCTCACGGAACCCTTTTGGGTTGAAGGAGGCCTTGTCAGGTGGCGGGTCTCGGATGTGGACTCCCGGGCAAAGCGGAACATGTTCCCCAGTAGTTGCTGCAGGTCTAGACCACAGTGGCGATGTTCCAATGGCAGATGGGATGGCAGCTGAGTTTGCCTTTGGGAGCAATGCAACAGGGTTAGTGAAACCATGGGAAGGTGAGAGGATCGAGGAATGTGTATCGGATGATCTTGAACTCACTCTTGGGAGCACTAAAACCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
BES1_N

Protein Analysis

329

Amino Acids

34.78

Weight (kDa)

8.73

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 4 - 146 1.5e-66 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 812
AccB1I GGYRCC 2 cut(s) 66, 200
AccI GTMKAC 1 cut(s) 257
AccII CGCG 3 cut(s) 72, 83, 544
AclWI GGATC 2 cut(s) 240, 935
AcyI GRCGYC 2 cut(s) 5, 67
AfaI GTAC 2 cut(s) 110, 547
AfiI CCNNNNNNNGG 3 cut(s) 644, 668, 917
AflIII ACRYGT 1 cut(s) 800
AgsI TTSAA 2 cut(s) 745, 956
AjnI CCWGG 3 cut(s) 490, 651, 717
AjuI GAANNNNNNNTTGG 2 cut(s) 948, 980
AluBI AGCT 9 cut(s) 124, 161, 266, 371, 472, 481, 531, 578, 869
AluI AGCT 9 cut(s) 124, 161, 266, 371, 472, 481, 531, 578, 869
Alw21I GWGCWC 3 cut(s) 511, 533, 974
Alw26I GTCTC 2 cut(s) 727, 774
AlwI GGATC 2 cut(s) 240, 935
Ama87I CYCGRG 1 cut(s) 785
AoxI GGCC 4 cut(s) 97, 174, 695, 750
ApeKI GCWGC 3 cut(s) 478, 818, 866
Asp700I GAANNNNTTC 1 cut(s) 802
AspLEI GCGC 2 cut(s) 69, 74
AspS9I GGNCC 3 cut(s) 151, 183, 695
AsuC2I CCSGG 4 cut(s) 645, 682, 786, 787
AsuHPI GGTGA 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 2 cut(s) 151, 183
BanI GGYRCC 2 cut(s) 66, 200
BanII GRGCYC 3 cut(s) 500, 533, 687
BbsI GAAGAC 2 cut(s) 201, 345
Bbv12I GWGCWC 3 cut(s) 511, 533, 974
BbvI GCAGC 3 cut(s) 490, 805, 878
BccI CCATC 5 cut(s) 83, 666, 706, 851, 856
BceAI ACGGC 3 cut(s) 127, 214, 409
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 3 cut(s) 492, 653, 719
BcnI CCSGG 4 cut(s) 645, 682, 786, 787
BcoDI GTCTC 2 cut(s) 727, 774
BfaI CTAG 2 cut(s) 267, 827
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 812
BglII AGATCT 1 cut(s) 87
BisI GCNGC 5 cut(s) 70, 81, 479, 819, 867
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 5 cut(s) 71, 82, 480, 820, 868
Bme1390I CCNGG 7 cut(s) 492, 645, 653, 682, 719, 786, 787
Bme18I GGWCC 2 cut(s) 151, 183
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 3 cut(s) 151, 183, 695
BmiI GGNNCC 5 cut(s) 68, 202, 499, 686, 731
BmrFI CCNGG 7 cut(s) 492, 645, 653, 682, 719, 786, 787
BmrI ACTGGG 5 cut(s) 333, 357, 577, 604, 803
BmsI GCATC 4 cut(s) 209, 311, 335, 394
BmuI ACTGGG 5 cut(s) 333, 357, 577, 604, 803
BpiI GAAGAC 2 cut(s) 201, 345
BpmI CTGGAG 1 cut(s) 495
Bpu1102I GCTNAGC 1 cut(s) 527
BpuMI CCSGG 4 cut(s) 645, 682, 786, 787
BsaAI YACGTR 1 cut(s) 27
BsaHI GRCGYC 2 cut(s) 5, 67
BsaI GGTCTC 2 cut(s) 727, 774
BsaJI CCNNGG 5 cut(s) 422, 491, 643, 785, 911
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 644, 668, 917
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 6 cut(s) 339, 363, 512, 572, 599, 809
Bse3DI GCAATG 2 cut(s) 403, 895
BseBI CCWGG 3 cut(s) 492, 653, 719
BseDI CCNNGG 5 cut(s) 422, 491, 643, 785, 911
BseLI CCNNNNNNNGG 3 cut(s) 644, 668, 917
BseMI GCAATG 2 cut(s) 403, 895
BseMII CTCAG 2 cut(s) 518, 861
BseNI ACTGG 6 cut(s) 339, 363, 512, 572, 599, 809
BseRI GAGGAG 2 cut(s) 76, 540
BseXI GCAGC 3 cut(s) 490, 805, 878
Bsh1236I CGCG 3 cut(s) 72, 83, 544
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 4 cut(s) 99, 176, 697, 752
BshNI GGYRCC 2 cut(s) 66, 200
BsiEI CGRYCG 1 cut(s) 649
BsiHKAI GWGCWC 3 cut(s) 511, 533, 974
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 5 cut(s) 96, 177, 645, 681, 786
BslFI GGGAC 2 cut(s) 25, 327
BslI CCNNNNNNNGG 3 cut(s) 644, 668, 917
BsmAI GTCTC 2 cut(s) 727, 774
BsmFI GGGAC 2 cut(s) 25, 327
BsmI GAATGC 2 cut(s) 24, 391
BsnI GGCC 4 cut(s) 99, 176, 697, 752
Bso31I GGTCTC 2 cut(s) 727, 774
BsoBI CYCGRG 1 cut(s) 785
Bsp1286I GDGCHC 5 cut(s) 500, 511, 533, 687, 974
Bsp143I GATC 4 cut(s) 87, 232, 927, 949
Bsp1720I GCTNAGC 1 cut(s) 527
Bsp19I CCATGG 2 cut(s) 422, 911
BspANI GGCC 4 cut(s) 99, 176, 697, 752
BspCNI CTCAG 2 cut(s) 519, 862
BspFNI CGCG 3 cut(s) 72, 83, 544
BspLI GGNNCC 5 cut(s) 68, 202, 499, 686, 731
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 812
BspPI GGATC 2 cut(s) 240, 935
BspT107I GGYRCC 2 cut(s) 66, 200
BspTNI GGTCTC 2 cut(s) 727, 774
BsrDI GCAATG 2 cut(s) 403, 895
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 6 cut(s) 339, 363, 512, 572, 599, 809
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 5 cut(s) 422, 491, 643, 785, 911
BssMI GATC 4 cut(s) 87, 232, 927, 949
BssNI GRCGYC 2 cut(s) 5, 67
BssT1I CCWWGG 2 cut(s) 422, 911
Bst2UI CCWGG 3 cut(s) 492, 653, 719
Bst4CI ACNGT 2 cut(s) 187, 836
Bst6I CTCTTC 1 cut(s) 631
BstACI GRCGYC 2 cut(s) 5, 67
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 5 cut(s) 373, 586, 605, 678, 695
BstDEI CTNAG 2 cut(s) 527, 870
BstDSI CCRYGG 2 cut(s) 422, 911
BstFNI CGCG 3 cut(s) 72, 83, 544
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 74
BstKTI GATC 4 cut(s) 90, 235, 930, 952
BstMAI GTCTC 2 cut(s) 727, 774
BstMBI GATC 4 cut(s) 87, 232, 927, 949
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 7 cut(s) 80, 111, 130, 478, 648, 682, 875
BstNI CCWGG 3 cut(s) 492, 653, 719
BstNSI RCATGY 2 cut(s) 109, 804
BstSCI CCNGG 7 cut(s) 490, 643, 651, 680, 717, 784, 785
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 3 cut(s) 72, 83, 544
BstV1I GCAGC 3 cut(s) 490, 805, 878
BstV2I GAAGAC 2 cut(s) 201, 345
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 4 cut(s) 99, 176, 697, 752
BtgI CCRYGG 2 cut(s) 422, 911
BtgZI GCGATG 2 cut(s) 61, 855
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 841
BveI ACCTGC 1 cut(s) 812
Cac8I GCNNGC 5 cut(s) 373, 586, 605, 678, 695
CfoI GCGC 2 cut(s) 69, 74
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 151, 183, 695
Cfr9I CCCGGG 1 cut(s) 785
Csp6I GTAC 2 cut(s) 109, 546
CviAII CATG 8 cut(s) 106, 238, 273, 297, 321, 423, 801, 912
CviQI GTAC 2 cut(s) 109, 546
DdeI CTNAG 2 cut(s) 527, 870
DinI GGCGCC 1 cut(s) 68
DpnI GATC 4 cut(s) 89, 234, 929, 951
DpnII GATC 4 cut(s) 87, 232, 927, 949
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Ecl136II GAGCTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 422, 911
Eco147I AGGCCT 1 cut(s) 752
Eco24I GRGCYC 3 cut(s) 500, 533, 687
Eco31I GGTCTC 2 cut(s) 727, 774
Eco47I GGWCC 2 cut(s) 151, 183
Eco53kI GAGCTC 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 785
EcoICRI GAGCTC 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 490, 651, 717
EcoT14I CCWWGG 2 cut(s) 422, 911
EcoT38I GRGCYC 3 cut(s) 500, 533, 687
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
ErhI CCWWGG 2 cut(s) 422, 911
FaeI CATG 8 cut(s) 109, 241, 276, 300, 324, 426, 804, 915
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 2 cut(s) 25, 327
FatI CATG 8 cut(s) 105, 237, 272, 296, 320, 422, 800, 911
FauI CCCGC 6 cut(s) 48, 352, 483, 642, 686, 758
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 5 cut(s) 70, 81, 479, 819, 867
FriOI GRGCYC 3 cut(s) 500, 533, 687
Fsp4HI GCNGC 5 cut(s) 70, 81, 479, 819, 867
FspBI CTAG 2 cut(s) 267, 827
GlaI GCGC 2 cut(s) 68, 73
GluI GCNGC 5 cut(s) 70, 81, 479, 819, 867
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 4 cut(s) 99, 176, 697, 752
HapII CCGG 5 cut(s) 96, 177, 645, 681, 786
HhaI GCGC 2 cut(s) 69, 74
Hin1I GRCGYC 2 cut(s) 5, 67
Hin1II CATG 8 cut(s) 109, 241, 276, 300, 324, 426, 804, 915
Hin6I GCGC 2 cut(s) 67, 72
HinP1I GCGC 2 cut(s) 67, 72
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 4 cut(s) 292, 316, 665, 781
HpaII CCGG 5 cut(s) 96, 177, 645, 681, 786
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 2 cut(s) 258, 780
Hpy188I TCNGA 3 cut(s) 315, 774, 946
Hpy188III TCNNGA 4 cut(s) 662, 669, 827, 953
Hpy8I GTNNAC 2 cut(s) 258, 780
Hpy99I CGWCG 2 cut(s) 10, 191
HpyAV CCTTC 4 cut(s) 25, 367, 739, 911
HpyCH4III ACNGT 2 cut(s) 187, 836
HpyCH4IV ACGT 2 cut(s) 5, 26
HpyCH4V TGCA 7 cut(s) 168, 222, 302, 326, 389, 821, 893
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 111, 130, 478, 648, 682, 875
HpyF3I CTNAG 2 cut(s) 527, 870
HpySE526I ACGT 2 cut(s) 5, 26
Hsp92I GRCGYC 2 cut(s) 5, 67
Hsp92II CATG 8 cut(s) 109, 241, 276, 300, 324, 426, 804, 915
HspAI GCGC 2 cut(s) 67, 72
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 87, 232, 927, 949
LmnI GCTCC 8 cut(s) 129, 477, 503, 514, 536, 690, 885, 969
Lsp1109I GCAGC 3 cut(s) 490, 805, 878
LweI GCATC 4 cut(s) 209, 311, 335, 394
MaeI CTAG 2 cut(s) 267, 827
MaeII ACGT 2 cut(s) 5, 26
MaeIII GTNAC 1 cut(s) 514
MalI GATC 4 cut(s) 89, 234, 929, 951
MboI GATC 4 cut(s) 87, 232, 927, 949
MboII GAAGA 6 cut(s) 97, 203, 206, 345, 618, 650
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 5 cut(s) 500, 511, 533, 687, 974
MluCI AATT 1 cut(s) 409
Mly113I GGCGCC 1 cut(s) 67
MlyI GAGTC 3 cut(s) 301, 325, 775
MmeI TCCRAC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 802
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 3 cut(s) 481, 526, 869
MspI CCGG 5 cut(s) 96, 177, 645, 681, 786
MspR9I CCNGG 7 cut(s) 492, 645, 653, 682, 719, 786, 787
MteI GCGCNGCGC 1 cut(s) 70
Mva1269I GAATGC 2 cut(s) 24, 391
MvaI CCWGG 3 cut(s) 492, 653, 719
MvnI CGCG 3 cut(s) 72, 83, 544
MwoI GCNNNNNNNGC 7 cut(s) 80, 111, 130, 478, 648, 682, 875
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 4 cut(s) 645, 682, 786, 787
NcoI CCATGG 2 cut(s) 422, 911
NdeII GATC 4 cut(s) 87, 232, 927, 949
NlaIII CATG 8 cut(s) 109, 241, 276, 300, 324, 426, 804, 915
NlaIV GGNNCC 5 cut(s) 68, 202, 499, 686, 731
NspI RCATGY 2 cut(s) 109, 804
PceI AGGCCT 1 cut(s) 752
PciI ACATGT 1 cut(s) 800
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 2 cut(s) 24, 391
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 1 cut(s) 665
PkrI GCNGC 5 cut(s) 71, 82, 480, 820, 868
PleI GAGTC 3 cut(s) 300, 324, 775
PluTI GGCGCC 1 cut(s) 70
PpsI GAGTC 3 cut(s) 300, 324, 775
Ppu21I YACGTR 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 151
PscI ACATGT 1 cut(s) 800
Psp124BI GAGCTC 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 490, 651, 717
PspGI CCWGG 3 cut(s) 490, 651, 717
PspN4I GGNNCC 5 cut(s) 68, 202, 499, 686, 731
PspPI GGNCC 3 cut(s) 151, 183, 695
PspPPI RGGWCCY 1 cut(s) 151
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 87
PvuII CAGCTG 2 cut(s) 481, 869
RsaI GTAC 2 cut(s) 110, 547
RsaNI GTAC 2 cut(s) 109, 546
SacI GAGCTC 1 cut(s) 533
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 5 cut(s) 70, 81, 479, 819, 867
Sau3AI GATC 4 cut(s) 87, 232, 927, 949
Sau96I GGNCC 3 cut(s) 151, 183, 695
SchI GAGTC 3 cut(s) 301, 325, 775
ScrFI CCNGG 7 cut(s) 492, 645, 653, 682, 719, 786, 787
SduI GDGCHC 5 cut(s) 500, 511, 533, 687, 974
SfaNI GCATC 4 cut(s) 209, 311, 335, 394
SfcI CTRYAG 1 cut(s) 819
SfoI GGCGCC 1 cut(s) 68
SinI GGWCC 2 cut(s) 151, 183
SmaI CCCGGG 1 cut(s) 787
Sse9I AATT 1 cut(s) 409
SseBI AGGCCT 1 cut(s) 752
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 2 cut(s) 267, 827
SstI GAGCTC 1 cut(s) 533
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 7 cut(s) 490, 643, 651, 680, 717, 784, 785
StyI CCWWGG 2 cut(s) 422, 911
TaaI ACNGT 2 cut(s) 187, 836
TaiI ACGT 2 cut(s) 8, 29
TaqI TCGA 4 cut(s) 189, 257, 553, 930
TasI AATT 1 cut(s) 409
TauI GCSGC 2 cut(s) 72, 83
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 140, 841
TseI GCWGC 3 cut(s) 478, 818, 866
TspDTI ATGAA 3 cut(s) 267, 475, 588
TspGWI ACGGA 1 cut(s) 742
TspMI CCCGGG 1 cut(s) 785
TspRI CASTG 2 cut(s) 140, 841
VpaK11BI GGWCC 2 cut(s) 151, 183
XbaI TCTAGA 1 cut(s) 826
XceI RCATGY 2 cut(s) 109, 804
XmaI CCCGGG 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 802
XspI CTAG 2 cut(s) 267, 827
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.