FvH4_3g07150

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006018
Physical Location & Seq
Reverse (-)
4245701 .. 4248850
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07150.t2

Sequence Viewer

Length: 990 bp
ATGATGACGACAGGGACGAGAATGCCTACGTGGAAGGAGAGGGAGAACAACAAGAAGAGGGAGCGGAGGCGCCGCGCCATCGCCGCGAAGATCTACTCCGGCCTCCGTATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCAACGAAGCCGGTTGGACCGTCGAAGAAGACGGCACCACTTACCGCAAGGGATGCAAACCTGTGGATCGCATGGACATAATAGGAGGGTCGACATCAGCTAGTCCATGTTCATCATACCAACCGAGTCCATGTGCATCCTACAATCCGAGTCCATGTGCGTCCTACAATCCGAGTCCTGCCTCGTCTTCCTTCCCGAGTCCAGCTCGCTATCCAGCAAATGCAAACGGCAATGCTGATGCCAATTCTCTCATCCCATGGCTTAAAACCCTCTCATCGACTGGCTCATCATCTGCCACATCCAAGCTCCCCCAACTCTTCATTCCAGGGGGTTCCATCAGTGCTCCAGTTACACCACCGCTGAGCTCCCCAACTTCGCGGACTCCTCGAACCAAAAGTGATTGGGATGAAGCTGTGGCTGGCTCAAACTGGGGTGGCCAGCATTATTCTTTCCTGCCCTCATCCACCCCGCCAAGCCCTGGTCGCCAGGTTCTTCCTGATTCAGGATGGCTTGCCGGGCTTCAAAGTGGGCCATCATCCCCCACATTCAGCCTTGTCTCGCGGAACCCTTTTGGGTTCAAGGAGGCCTTGTCAGGTGGTGGTTCTCGGATGTGGACTCCTGGGCAAAGCGGAACATGTTCCCCTGTAGTTGCTGCAGGTCTAGACCACACTGGAGATGTTGCAATGTCAGATGGGATGGCAGCTGAGTTTGCCTTTGGGAGCAATGCAACAGGGTTAGTGAAACCATGGGAAGGTGAGAGGATTGAGGAATGTGTATCGGATGATCTTGAACTCACTCTTGGGAGCACTAAGACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
BES1_N

Protein Analysis

330

Amino Acids

34.93

Weight (kDa)

8.73

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 2 - 67 9.6e-11 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 815
AccB1I GGYRCC 2 cut(s) 69, 203
AccB7I CCANNNNNTGG 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 260
AccII CGCG 4 cut(s) 75, 86, 547, 730
AciI CCGC 9 cut(s) 64, 73, 84, 214, 527, 547, 638, 730, 798
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 647, 671, 920
AflIII ACRYGT 1 cut(s) 803
AgsI TTSAA 3 cut(s) 692, 748, 959
AjnI CCWGG 5 cut(s) 493, 646, 654, 787, 983
AjuI GAANNNNNNNTTGG 4 cut(s) 474, 506, 951, 983
AluBI AGCT 8 cut(s) 127, 164, 269, 374, 475, 534, 581, 872
AluI AGCT 8 cut(s) 127, 164, 269, 374, 475, 534, 581, 872
Alw21I GWGCWC 3 cut(s) 514, 536, 977
Alw26I GTCTC 1 cut(s) 730
AlwI GGATC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 4 cut(s) 100, 604, 698, 753
ApeKI GCWGC 2 cut(s) 821, 869
Asp700I GAANNNNTTC 1 cut(s) 805
AspLEI GCGC 2 cut(s) 72, 77
AspS9I GGNCC 3 cut(s) 154, 186, 698
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 2 cut(s) 154, 186
BalI TGGCCA 1 cut(s) 606
BanI GGYRCC 2 cut(s) 69, 203
BanII GRGCYC 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 204, 348
Bbv12I GWGCWC 3 cut(s) 514, 536, 977
BbvI GCAGC 2 cut(s) 808, 881
BccI CCATC 6 cut(s) 86, 512, 669, 709, 854, 859
BceAI ACGGC 3 cut(s) 130, 217, 412
BciT130I CCWGG 5 cut(s) 495, 648, 656, 789, 985
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 730
BfaI CTAG 2 cut(s) 270, 830
BfmI CTRYAG 2 cut(s) 813, 822
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 815
BglII AGATCT 1 cut(s) 90
BisI GCNGC 4 cut(s) 73, 84, 822, 870
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 4 cut(s) 74, 85, 823, 871
Bme1390I CCNGG 6 cut(s) 495, 648, 656, 685, 789, 985
Bme18I GGWCC 2 cut(s) 154, 186
BmeT110I CYCGRG 1 cut(s) 364
BmgT120I GGNCC 3 cut(s) 154, 186, 698
BmiI GGNNCC 4 cut(s) 71, 205, 502, 734
BmrFI CCNGG 6 cut(s) 495, 648, 656, 685, 789, 985
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 3 cut(s) 212, 314, 397
BmuI ACTGGG 1 cut(s) 607
BpiI GAAGAC 2 cut(s) 204, 348
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 2 cut(s) 498, 861
Bpu1102I GCTNAGC 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 685
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 5 cut(s) 425, 494, 646, 788, 914
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 671, 920
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 4 cut(s) 454, 515, 602, 844
Bse3DI GCAATG 3 cut(s) 406, 858, 898
BseBI CCWGG 5 cut(s) 495, 648, 656, 789, 985
BseDI CCNNGG 5 cut(s) 425, 494, 646, 788, 914
BseLI CCNNNNNNNGG 3 cut(s) 647, 671, 920
BseMI GCAATG 3 cut(s) 406, 858, 898
BseMII CTCAG 2 cut(s) 521, 864
BseNI ACTGG 4 cut(s) 454, 515, 602, 844
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 2 cut(s) 808, 881
Bsh1236I CGCG 4 cut(s) 75, 86, 547, 730
BshFI GGCC 4 cut(s) 102, 606, 700, 755
BshNI GGYRCC 2 cut(s) 69, 203
BsiHKAI GWGCWC 3 cut(s) 514, 536, 977
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 3 cut(s) 99, 180, 684
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 647, 671, 920
BsmAI GTCTC 1 cut(s) 730
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 4 cut(s) 102, 606, 700, 755
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 514, 536, 977
Bsp143I GATC 3 cut(s) 90, 235, 952
Bsp1720I GCTNAGC 1 cut(s) 530
Bsp19I CCATGG 2 cut(s) 425, 914
BspACI CCGC 9 cut(s) 64, 73, 84, 214, 527, 547, 638, 730, 798
BspANI GGCC 4 cut(s) 102, 606, 700, 755
BspCNI CTCAG 2 cut(s) 522, 865
BspFNI CGCG 4 cut(s) 75, 86, 547, 730
BspLI GGNNCC 4 cut(s) 71, 205, 502, 734
BspMAI CTGCAG 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 2 cut(s) 69, 203
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 3 cut(s) 406, 858, 898
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 4 cut(s) 454, 515, 602, 844
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 5 cut(s) 425, 494, 646, 788, 914
BssMI GATC 3 cut(s) 90, 235, 952
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 2 cut(s) 425, 914
Bst2UI CCWGG 5 cut(s) 495, 648, 656, 789, 985
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 50, 491
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 376, 589, 608, 681
BstDEI CTNAG 3 cut(s) 530, 873, 978
BstDSI CCRYGG 2 cut(s) 425, 914
BstENI CCTNNNNNAGG 1 cut(s) 669
BstFNI CGCG 4 cut(s) 75, 86, 547, 730
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 77
BstKTI GATC 3 cut(s) 93, 238, 955
BstMAI GTCTC 1 cut(s) 730
BstMBI GATC 3 cut(s) 90, 235, 952
BstMWI GCNNNNNNNGC 6 cut(s) 83, 133, 222, 651, 685, 878
BstNI CCWGG 5 cut(s) 495, 648, 656, 789, 985
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 6 cut(s) 493, 646, 654, 683, 787, 983
BstSFI CTRYAG 2 cut(s) 813, 822
BstUI CGCG 4 cut(s) 75, 86, 547, 730
BstV1I GCAGC 2 cut(s) 808, 881
BstV2I GAAGAC 2 cut(s) 204, 348
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 4 cut(s) 102, 606, 700, 755
BtgI CCRYGG 2 cut(s) 425, 914
BtgZI GCGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 136, 514, 837
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 4 cut(s) 376, 589, 608, 681
CfoI GCGC 2 cut(s) 72, 77
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 154, 186, 698
CseI GACGC 1 cut(s) 318
CsiI ACCWGGT 1 cut(s) 983
Csp6I GTAC 1 cut(s) 112
CviAII CATG 7 cut(s) 241, 276, 300, 324, 426, 804, 915
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 3 cut(s) 530, 873, 978
DinI GGCGCC 1 cut(s) 71
DpnI GATC 3 cut(s) 92, 237, 954
DpnII GATC 3 cut(s) 90, 235, 952
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 50, 491
EarI CTCTTC 2 cut(s) 50, 491
Ecl136II GAGCTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 425, 914
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 1 cut(s) 536
Eco47I GGWCC 2 cut(s) 154, 186
Eco53kI GAGCTC 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 534
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 5 cut(s) 493, 646, 654, 787, 983
EcoT14I CCWWGG 2 cut(s) 425, 914
EcoT38I GRGCYC 1 cut(s) 536
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 425, 914
FaeI CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 28
FatI CATG 7 cut(s) 240, 275, 299, 323, 425, 803, 914
FauI CCCGC 1 cut(s) 645
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 4 cut(s) 73, 84, 822, 870
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 4 cut(s) 73, 84, 822, 870
FspBI CTAG 2 cut(s) 270, 830
GlaI GCGC 2 cut(s) 71, 76
GluI GCNGC 4 cut(s) 73, 84, 822, 870
GsuI CTGGAG 2 cut(s) 498, 861
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 4 cut(s) 102, 606, 700, 755
HapII CCGG 3 cut(s) 99, 180, 684
HgaI GACGC 1 cut(s) 318
HhaI GCGC 2 cut(s) 72, 77
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
Hin6I GCGC 2 cut(s) 70, 75
HinP1I GCGC 2 cut(s) 70, 75
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 7 cut(s) 295, 319, 343, 367, 550, 668, 784
HpaII CCGG 3 cut(s) 99, 180, 684
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 2 cut(s) 261, 783
Hpy188I TCNGA 5 cut(s) 318, 342, 777, 859, 949
Hpy188III TCNNGA 5 cut(s) 364, 665, 672, 830, 956
Hpy8I GTNNAC 2 cut(s) 261, 783
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 28, 370, 914
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 7 cut(s) 171, 225, 305, 392, 824, 851, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 133, 222, 651, 685, 878
HpyF3I CTNAG 3 cut(s) 530, 873, 978
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
HspAI GCGC 2 cut(s) 70, 75
KasI GGCGCC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 90, 235, 952
LmnI GCTCC 7 cut(s) 61, 132, 480, 517, 539, 888, 972
Lsp1109I GCAGC 2 cut(s) 808, 881
LweI GCATC 3 cut(s) 212, 314, 397
MabI ACCWGGT 1 cut(s) 983
MaeI CTAG 2 cut(s) 270, 830
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 517
MalI GATC 3 cut(s) 92, 237, 954
MbiI CCGCTC 1 cut(s) 64
MboI GATC 3 cut(s) 90, 235, 952
MboII GAAGA 7 cut(s) 67, 100, 206, 209, 348, 478, 653
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 3 cut(s) 514, 536, 977
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 1 cut(s) 412
MluNI TGGCCA 1 cut(s) 606
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 6 cut(s) 304, 328, 352, 376, 544, 778
MmeI TCCRAC 1 cut(s) 164
Mox20I TGGCCA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 805
MscI TGGCCA 1 cut(s) 606
MseI TTAA 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 529, 872
MspI CCGG 3 cut(s) 99, 180, 684
MspR9I CCNGG 6 cut(s) 495, 648, 656, 685, 789, 985
MteI GCGCNGCGC 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 5 cut(s) 495, 648, 656, 789, 985
MvnI CGCG 4 cut(s) 75, 86, 547, 730
MwoI GCNNNNNNNGC 6 cut(s) 83, 133, 222, 651, 685, 878
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 1 cut(s) 685
NcoI CCATGG 2 cut(s) 425, 914
NdeII GATC 3 cut(s) 90, 235, 952
NlaIII CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
NlaIV GGNNCC 4 cut(s) 71, 205, 502, 734
NspI RCATGY 1 cut(s) 807
PceI AGGCCT 1 cut(s) 755
PciI ACATGT 1 cut(s) 803
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 805
PfeI GAWTC 1 cut(s) 668
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 4 cut(s) 74, 85, 823, 871
PleI GAGTC 6 cut(s) 303, 327, 351, 375, 544, 778
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 6 cut(s) 303, 327, 351, 375, 544, 778
Ppu21I YACGTR 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 803
Psp124BI GAGCTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 5 cut(s) 493, 646, 654, 787, 983
PspGI CCWGG 5 cut(s) 493, 646, 654, 787, 983
PspN4I GGNNCC 4 cut(s) 71, 205, 502, 734
PspPI GGNCC 3 cut(s) 154, 186, 698
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 536
SalI GTCGAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 73, 84, 822, 870
Sau3AI GATC 3 cut(s) 90, 235, 952
Sau96I GGNCC 3 cut(s) 154, 186, 698
SchI GAGTC 6 cut(s) 304, 328, 352, 376, 544, 778
ScrFI CCNGG 6 cut(s) 495, 648, 656, 685, 789, 985
SduI GDGCHC 3 cut(s) 514, 536, 977
SexAI ACCWGGT 1 cut(s) 983
SfaNI GCATC 3 cut(s) 212, 314, 397
SfcI CTRYAG 2 cut(s) 813, 822
SfoI GGCGCC 1 cut(s) 71
SinI GGWCC 2 cut(s) 154, 186
Sse9I AATT 1 cut(s) 412
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 9 cut(s) 64, 73, 84, 214, 527, 547, 638, 730, 798
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 2 cut(s) 270, 830
SstI GAGCTC 1 cut(s) 536
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 6 cut(s) 493, 646, 654, 683, 787, 983
StyI CCWWGG 2 cut(s) 425, 914
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 192, 260, 446, 556
TasI AATT 1 cut(s) 412
TauI GCSGC 2 cut(s) 75, 86
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 3 cut(s) 143, 514, 844
TseI GCWGC 2 cut(s) 821, 869
TspDTI ATGAA 3 cut(s) 270, 478, 591
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 3 cut(s) 143, 514, 844
Van91I CCANNNNNTGG 1 cut(s) 647
VpaK11BI GGWCC 2 cut(s) 154, 186
XagI CCTNNNNNAGG 1 cut(s) 669
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 1 cut(s) 807
XmiI GTMKAC 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 805
XspI CTAG 2 cut(s) 270, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.