Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298359.1

Orthogroup ID

OG0006018

Physical Location & Seq

Genomic Coordinates Reverse (-)

18 .. 767

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggacataatgggagggtcgacatcagctagcccatgttcatcataccaaccgagcccatgtgcatcctacaatccgagtccatgtgcatcatacaatcccagtcctgcctcgtcttccttcccgagtccagctcgctatccagcgaatgcaaacggcaatgctgatgccaattctctcatcccatggcttaaaaccctctcatcgtcaggctcatcctctgccacatccaagctcccgcagctgttcattccagggggctccattagtgctccagttacaccaccgctgagctccccaacttcgcgtactcctcgaaccaaaagcgactgggatgaagctgtggctggctcaaactggggtagccagcattattctttcctgccctcttccaccccgccaagccccggtcgccaggttcttcctgattcgggatggcttgccgggctccaaagcgggccatcatcccctacattcagcctcgtctcacggaacccttttggtttgaaggaggccttgtcaggtggtgggtctcggatgtggactcccgggcaaagtggaacatgttccccagtagttgccgcaggtctagaccacagtggcgatgttccaatggcagatgggatggcagctgagtttgcctttgggagcaatgcaacagggttagtgaaaccatgggaaggtgagaggatcgaggaatgtgtatcggatgatcttgaactcactcttgggagcacgaaaaccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

249

Amino Acids

25.52

Weight (kDa)

5.11

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18890 AT4G18890
fragaria_vesca	FvH4_3g07150 FvH4_3g07150 FvH4_3g07150 FvH4_3g07150
malus_domestica	MD00G1007700.v1.1 MD10G1274200.v1.1
prunus_persica	Prupe.4G068200_v2.0.a1 Prupe.4G068200_v2.0.a1 Prupe.4G068200_v2.0.a1 Prupe.4G068200_v2.0.a1 Prupe.4G068200_v2.0.a1 Prupe.4G068200_v2.0.a1
pyrus_communis	pycom05g27290 pycom10g22890
rosa_chinensis	RchiOBHm_Chr5g0011971
rosa_laevigata	RLG00000031875
rosa_multiflora	Rmu_co8298359.1_g000001 Rmu_ssc0000009.1_g000035
rosa_roxburghii	Rroxscaffold_1G00064620
rosa_rugosa	Rorug04G0460200
rosa_samantha	Rh5AG092000 Rh5BG087800 Rh5CG101800 Rh5DG088400
rosa_wichuraiana	Rw5G008030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	1 cut(s)	307
AciI	CCGC	5 cut(s)	239, 287, 398, 456, 582
AclWI	GGATC	1 cut(s)	698
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	3 cut(s)	407, 431, 680
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	2 cut(s)	508, 719
AjnI	CCWGG	3 cut(s)	253, 414, 743
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	7 cut(s)	29, 134, 235, 244, 294, 341, 632
AluI	AGCT	7 cut(s)	29, 134, 235, 244, 294, 341, 632
Alw21I	GWGCWC	3 cut(s)	274, 296, 737
Alw26I	GTCTC	2 cut(s)	490, 537
AlwI	GGATC	1 cut(s)	698
Ama87I	CYCGRG	2 cut(s)	124, 548
AoxI	GGCC	2 cut(s)	458, 513
ApeKI	GCWGC	2 cut(s)	241, 629
Asp700I	GAANNNNTTC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	4 cut(s)	408, 445, 549, 550
AsuHPI	GGTGA	1 cut(s)	695
AsuNHI	GCTAGC	1 cut(s)	29
AvaI	CYCGRG	2 cut(s)	124, 548
BanII	GRGCYC	4 cut(s)	59, 263, 296, 450
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	3 cut(s)	274, 296, 737
BbvI	GCAGC	2 cut(s)	253, 641
BccI	CCATC	4 cut(s)	429, 469, 614, 619
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	3 cut(s)	255, 416, 745
BcnI	CCSGG	4 cut(s)	408, 445, 549, 550
BcoDI	GTCTC	2 cut(s)	490, 537
BfaI	CTAG	2 cut(s)	30, 590
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	3 cut(s)	242, 582, 630
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	3 cut(s)	243, 583, 631
Bme1390I	CCNGG	7 cut(s)	255, 408, 416, 445, 549, 550, 745
BmeT110I	CYCGRG	2 cut(s)	124, 548
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	262, 449, 494
BmrFI	CCNGG	7 cut(s)	255, 408, 416, 445, 549, 550, 745
BmrI	ACTGGG	4 cut(s)	96, 340, 367, 566
BmsI	GCATC	3 cut(s)	74, 98, 157
BmtI	GCTAGC	1 cut(s)	33
BmuI	ACTGGG	4 cut(s)	96, 340, 367, 566
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BpmI	CTGGAG	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuMI	CCSGG	4 cut(s)	408, 445, 549, 550
BsaI	GGTCTC	1 cut(s)	537
BsaJI	CCNNGG	5 cut(s)	185, 254, 406, 548, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 431, 680
Bse1I	ACTGG	5 cut(s)	102, 275, 335, 362, 572
Bse3DI	GCAATG	2 cut(s)	166, 658
BseBI	CCWGG	3 cut(s)	255, 416, 745
BseDI	CCNNGG	5 cut(s)	185, 254, 406, 548, 674
BseLI	CCNNNNNNNGG	3 cut(s)	407, 431, 680
BseMI	GCAATG	2 cut(s)	166, 658
BseMII	CTCAG	2 cut(s)	281, 624
BseNI	ACTGG	5 cut(s)	102, 275, 335, 362, 572
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	253, 641
Bsh1236I	CGCG	1 cut(s)	307
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	2 cut(s)	460, 515
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	3 cut(s)	274, 296, 737
BsiHKCI	CYCGRG	2 cut(s)	124, 548
BsiSI	CCGG	3 cut(s)	408, 444, 549
BslI	CCNNNNNNNGG	3 cut(s)	407, 431, 680
BsmAI	GTCTC	2 cut(s)	490, 537
BsmBI	CGTCTC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	460, 515
Bso31I	GGTCTC	1 cut(s)	537
BsoBI	CYCGRG	2 cut(s)	124, 548
Bsp1286I	GDGCHC	6 cut(s)	59, 263, 274, 296, 450, 737
Bsp143I	GATC	2 cut(s)	690, 712
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	2 cut(s)	185, 674
BspACI	CCGC	5 cut(s)	239, 287, 398, 456, 582
BspANI	GGCC	2 cut(s)	460, 515
BspCNI	CTCAG	2 cut(s)	282, 625
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	262, 449, 494
BspMI	ACCTGC	1 cut(s)	575
BspOI	GCTAGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	537
BsrDI	GCAATG	2 cut(s)	166, 658
BsrI	ACTGG	5 cut(s)	102, 275, 335, 362, 572
BssECI	CCNNGG	5 cut(s)	185, 254, 406, 548, 674
BssMI	GATC	2 cut(s)	690, 712
BssT1I	CCWWGG	2 cut(s)	185, 674
Bst2UI	CCWGG	3 cut(s)	255, 416, 745
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	394
BstC8I	GCNNGC	6 cut(s)	31, 136, 349, 368, 441, 458
BstDEI	CTNAG	2 cut(s)	290, 633
BstDSI	CCRYGG	2 cut(s)	185, 674
BstFNI	CGCG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	693, 715
BstMAI	GTCTC	2 cut(s)	490, 537
BstMBI	GATC	2 cut(s)	690, 712
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 411, 445, 638
BstNI	CCWGG	3 cut(s)	255, 416, 745
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	7 cut(s)	253, 406, 414, 443, 547, 548, 743
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	253, 641
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	460, 515
BtgI	CCRYGG	2 cut(s)	185, 674
BtgZI	GCGATG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	604
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	6 cut(s)	31, 136, 349, 368, 441, 458
Cfr13I	GGNCC	1 cut(s)	458
Cfr9I	CCCGGG	1 cut(s)	548
CsiI	ACCWGGT	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	6 cut(s)	36, 60, 84, 186, 564, 675
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	290, 633
DpnI	GATC	2 cut(s)	692, 714
DpnII	GATC	2 cut(s)	690, 712
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	185, 674
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	4 cut(s)	59, 263, 296, 450
Eco31I	GGTCTC	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	124, 548
EcoICRI	GAGCTC	1 cut(s)	294
EcoRII	CCWGG	3 cut(s)	253, 414, 743
EcoT14I	CCWWGG	2 cut(s)	185, 674
EcoT38I	GRGCYC	4 cut(s)	59, 263, 296, 450
ErhI	CCWWGG	2 cut(s)	185, 674
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	6 cut(s)	39, 63, 87, 189, 567, 678
FaiI	YATR	9 cut(s)	8, 37, 46, 61, 85, 94, 187, 565, 676
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	6 cut(s)	35, 59, 83, 185, 563, 674
FauI	CCCGC	3 cut(s)	246, 405, 449
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	242, 582, 630
FriOI	GRGCYC	4 cut(s)	59, 263, 296, 450
Fsp4HI	GCNGC	3 cut(s)	242, 582, 630
FspBI	CTAG	2 cut(s)	30, 590
GluI	GCNGC	3 cut(s)	242, 582, 630
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	460, 515
HapII	CCGG	3 cut(s)	408, 444, 549
Hin1II	CATG	6 cut(s)	39, 63, 87, 189, 567, 678
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	79, 127, 428, 544
HpaII	CCGG	3 cut(s)	408, 444, 549
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	2 cut(s)	21, 543
Hpy188I	TCNGA	3 cut(s)	78, 537, 709
Hpy188III	TCNNGA	5 cut(s)	124, 425, 432, 590, 716
Hpy8I	GTNNAC	2 cut(s)	21, 543
HpyAV	CCTTC	3 cut(s)	130, 502, 674
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	4 cut(s)	65, 89, 152, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 411, 445, 638
HpyF3I	CTNAG	2 cut(s)	290, 633
Hsp92II	CATG	6 cut(s)	39, 63, 87, 189, 567, 678
Kzo9I	GATC	2 cut(s)	690, 712
LmnI	GCTCC	7 cut(s)	240, 266, 277, 299, 453, 648, 732
Lsp1109I	GCAGC	2 cut(s)	253, 641
LweI	GCATC	3 cut(s)	74, 98, 157
MabI	ACCWGGT	1 cut(s)	743
MaeI	CTAG	2 cut(s)	30, 590
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	692, 714
MboI	GATC	2 cut(s)	690, 712
MboII	GAAGA	3 cut(s)	108, 381, 413
MhlI	GDGCHC	6 cut(s)	59, 263, 274, 296, 450, 737
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	88, 136, 538
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	3 cut(s)	244, 289, 632
MspI	CCGG	3 cut(s)	408, 444, 549
MspR9I	CCNGG	7 cut(s)	255, 408, 416, 445, 549, 550, 745
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	3 cut(s)	255, 416, 745
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	241, 411, 445, 638
NciI	CCSGG	4 cut(s)	408, 445, 549, 550
NcoI	CCATGG	2 cut(s)	185, 674
NdeII	GATC	2 cut(s)	690, 712
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	6 cut(s)	39, 63, 87, 189, 567, 678
NlaIV	GGNNCC	3 cut(s)	262, 449, 494
NspI	RCATGY	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	515
PciI	ACATGT	1 cut(s)	563
PctI	GAATGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	243, 583, 631
PleI	GAGTC	3 cut(s)	87, 135, 538
PpsI	GAGTC	3 cut(s)	87, 135, 538
PscI	ACATGT	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	3 cut(s)	253, 414, 743
PspGI	CCWGG	3 cut(s)	253, 414, 743
PspN4I	GGNNCC	3 cut(s)	262, 449, 494
PspPI	GGNCC	1 cut(s)	458
PvuII	CAGCTG	2 cut(s)	244, 632
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	242, 582, 630
Sau3AI	GATC	2 cut(s)	690, 712
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	3 cut(s)	88, 136, 538
ScrFI	CCNGG	7 cut(s)	255, 408, 416, 445, 549, 550, 745
SduI	GDGCHC	6 cut(s)	59, 263, 274, 296, 450, 737
SexAI	ACCWGGT	1 cut(s)	743
SfaNI	GCATC	3 cut(s)	74, 98, 157
SmaI	CCCGGG	1 cut(s)	550
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	5 cut(s)	239, 287, 398, 456, 582
SspMI	CTAG	2 cut(s)	30, 590
SstI	GAGCTC	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	7 cut(s)	253, 406, 414, 443, 547, 548, 743
StyI	CCWWGG	2 cut(s)	185, 674
TaaI	ACNGT	1 cut(s)	599
TaqI	TCGA	3 cut(s)	20, 316, 693
TasI	AATT	1 cut(s)	172
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	2 cut(s)	241, 629
TspDTI	ATGAA	3 cut(s)	30, 238, 351
TspGWI	ACGGA	1 cut(s)	505
TspMI	CCCGGG	1 cut(s)	548
TspRI	CASTG	1 cut(s)	604
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	1 cut(s)	567
XmaI	CCCGGG	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	2 cut(s)	30, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.