MD10G1274200.v1.1

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006018
Physical Location & Seq
Reverse (-)
36583838 .. 36587156
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1274200.v1.1.491

Sequence Viewer

Length: 996 bp
ATGATGACGTCGGGAACGAGAATGCCGACGTGGAAGGAGAGAGAGAACAACAAGAAGCGGGAGCGGCGGCGCCGGGCAATCGCCGCGAAGATCTACTCCGGGCTTCGGATGTACGGAAACTACAAGCTCCCGAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCAACGAAGCCGGCTGGACCGTCGAAGAAGACGGTACCACTTACCGAAAGGGATGCAAACCCGTGGATCGCATGGACATAATGGGGGGTTCTACCTCAGCAAGTCCATGTTCATCGTACCAGCCAAGTCCCTGTGCATCCTACAATCCAAGTCCCGGCGCATCCTACAATCCAAGTCCTGCCTCATCTTCCTTCCCAAGTCCTGCCCGCTACCATGCAAATGAAAACGGTAATGCTGATGCGAATTCTCTGATCCCATGGCTTAAAACGCTCTCATCAGGCTCATCCTCTGCCACGTCCAAGCTCCCCCAATTCTTTGTTCAAGGGGGTTCCATAAGTGCTCCAGTCACCCCACCACTGAGCTCCCCAACTTGTCGAACTCCTCGAACCAAGAGCGACTGGGATGAAGCAGTGGCTGGCTCAAGCTGGGCAGGGCAGCATTACCCTTTCCTGCCTTCGTCCACCCCACCAAGCCCCGGTCGCCAGGGTCTGCCTGATTCAGGATGGCTTGCTGGACTGCAAATTCCTCAGAGTGGCCCATCATCCCCAACATTCAGCCTCGTCTCGAAAAACCCTTTTAACTTGAAGGAGGCTTTGTCAGGTGCAGGGTCTCGGATGTGGACTCCTGGGCAAAGTGGAACATGTTCCCCGGCCGTTGCTGCAAGTATTGATCACACTGGTGACATCCCAATGTCGGATGGGATGGCAGCGGAGTTTGCATTTGGCAGTAACACAACAGGATTAGTGAAGCCATGGGAAGGTGAGAGGATTGAGGAATGCGTATCAGATGATCTCGAACTTACGCTGGGGAGCACTCGGACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
BES1_N

Protein Analysis

332

Amino Acids

35.35

Weight (kDa)

8.57

Isoelectric Point (pI)

57.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 5 - 147 4.1e-66 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 2 cut(s) 69, 203
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 1 cut(s) 86
AciI CCGC 6 cut(s) 58, 64, 67, 84, 376, 878
AclWI GGATC 2 cut(s) 243, 415
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 2 cut(s) 412, 690
AcyI GRCGYC 2 cut(s) 8, 70
AfaI GTAC 3 cut(s) 113, 205, 287
AfiI CCNNNNNNNGG 7 cut(s) 105, 323, 644, 668, 701, 862, 926
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 2 cut(s) 491, 754
AjiI CACGTC 2 cut(s) 30, 465
AjnI CCWGG 3 cut(s) 651, 793, 989
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AleI CACNNNNGTG 1 cut(s) 846
AluBI AGCT 5 cut(s) 127, 164, 472, 531, 594
AluI AGCT 5 cut(s) 127, 164, 472, 531, 594
Alw21I GWGCWC 3 cut(s) 511, 533, 983
Alw26I GTCTC 2 cut(s) 736, 783
AlwI GGATC 2 cut(s) 243, 415
AlwNI CAGNNNCTG 2 cut(s) 584, 658
AoxI GGCC 2 cut(s) 703, 819
ApeKI GCWGC 3 cut(s) 604, 827, 875
ApoI RAATTY 2 cut(s) 412, 690
Asp700I GAANNNNTTC 1 cut(s) 811
Asp718I GGTACC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 72, 329
AspS9I GGNCC 4 cut(s) 154, 186, 704, 987
AsuC2I CCSGG 5 cut(s) 74, 100, 324, 645, 818
AsuHPI GGTGA 3 cut(s) 508, 860, 941
AvaII GGWCC 3 cut(s) 154, 186, 987
BanI GGYRCC 2 cut(s) 69, 203
BanII GRGCYC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 3 cut(s) 511, 533, 983
BbvCI CCTCAGC 1 cut(s) 265
BbvI GCAGC 3 cut(s) 616, 814, 887
BccI CCATC 4 cut(s) 666, 715, 860, 865
BceAI ACGGC 1 cut(s) 806
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 3 cut(s) 653, 795, 991
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 5 cut(s) 74, 100, 324, 645, 818
BcoDI GTCTC 2 cut(s) 736, 783
BfoI RGCGCY 1 cut(s) 73
BglII AGATCT 1 cut(s) 90
BisI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
BlsI GCNGC 6 cut(s) 66, 69, 85, 606, 829, 877
Bme1390I CCNGG 8 cut(s) 74, 100, 324, 645, 653, 795, 818, 991
Bme18I GGWCC 3 cut(s) 154, 186, 987
BmgBI CACGTC 2 cut(s) 30, 465
BmgT120I GGNCC 4 cut(s) 154, 186, 704, 987
BmiI GGNNCC 3 cut(s) 71, 205, 499
BmrFI CCNGG 8 cut(s) 74, 100, 324, 645, 653, 795, 818, 991
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 4 cut(s) 212, 314, 338, 397
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 574
BpuMI CCSGG 5 cut(s) 74, 100, 324, 645, 818
BsaHI GRCGYC 2 cut(s) 8, 70
BsaI GGTCTC 1 cut(s) 783
BsaJI CCNNGG 7 cut(s) 231, 425, 643, 652, 794, 816, 920
BsaXI ACNNNNNCTCC 2 cut(s) 749, 779
Bsc4I CCNNNNNNNGG 7 cut(s) 105, 323, 644, 668, 701, 862, 926
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 512, 572, 850
BseBI CCWGG 3 cut(s) 653, 795, 991
BseDI CCNNGG 7 cut(s) 231, 425, 643, 652, 794, 816, 920
BseLI CCNNNNNNNGG 7 cut(s) 105, 323, 644, 668, 701, 862, 926
BseMII CTCAG 3 cut(s) 279, 518, 710
BseNI ACTGG 3 cut(s) 512, 572, 850
BseRI GAGGAG 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 819
BseXI GCAGC 3 cut(s) 616, 814, 887
BseYI CCCAGC 2 cut(s) 594, 973
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 2 cut(s) 649, 822
BshFI GGCC 2 cut(s) 705, 821
BshNI GGYRCC 2 cut(s) 69, 203
BsiEI CGRYCG 2 cut(s) 649, 822
BsiHKAI GWGCWC 3 cut(s) 511, 533, 983
BsiSI CCGG 6 cut(s) 73, 99, 180, 324, 645, 818
BslFI GGGAC 2 cut(s) 282, 306
BslI CCNNNNNNNGG 7 cut(s) 105, 323, 644, 668, 701, 862, 926
BsmAI GTCTC 2 cut(s) 736, 783
BsmBI CGTCTC 1 cut(s) 736
BsmFI GGGAC 2 cut(s) 282, 306
BsmI GAATGC 2 cut(s) 27, 950
BsnI GGCC 2 cut(s) 705, 821
Bso31I GGTCTC 1 cut(s) 783
Bsp1286I GDGCHC 3 cut(s) 511, 533, 983
Bsp143I GATC 5 cut(s) 90, 235, 420, 838, 958
Bsp19I CCATGG 2 cut(s) 425, 920
BspACI CCGC 6 cut(s) 58, 64, 67, 84, 376, 878
BspANI GGCC 2 cut(s) 705, 821
BspCNI CTCAG 3 cut(s) 278, 519, 709
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 71, 205, 499
BspPI GGATC 2 cut(s) 243, 415
BspT107I GGYRCC 2 cut(s) 69, 203
BspTNI GGTCTC 1 cut(s) 783
BsrBI CCGCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 3 cut(s) 512, 572, 850
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 7 cut(s) 231, 425, 643, 652, 794, 816, 920
BssMI GATC 5 cut(s) 90, 235, 420, 838, 958
BssNI GRCGYC 2 cut(s) 8, 70
BssT1I CCWWGG 2 cut(s) 425, 920
Bst2UI CCWGG 3 cut(s) 653, 795, 991
Bst4CI ACNGT 3 cut(s) 190, 203, 398
BstACI GRCGYC 2 cut(s) 8, 70
BstC8I GCNNGC 4 cut(s) 181, 376, 586, 678
BstDEI CTNAG 3 cut(s) 265, 527, 696
BstDSI CCRYGG 3 cut(s) 231, 425, 920
BstENI CCTNNNNNAGG 1 cut(s) 666
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 329
BstKTI GATC 5 cut(s) 93, 238, 423, 841, 961
BstMAI GTCTC 2 cut(s) 736, 783
BstMBI GATC 5 cut(s) 90, 235, 420, 838, 958
BstMCI CGRYCG 2 cut(s) 649, 822
BstMWI GCNNNNNNNGC 7 cut(s) 64, 83, 133, 436, 648, 827, 884
BstNI CCWGG 3 cut(s) 653, 795, 991
BstNSI RCATGY 1 cut(s) 813
BstSCI CCNGG 8 cut(s) 72, 98, 322, 643, 651, 793, 816, 989
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 3 cut(s) 616, 814, 887
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 819
BsuRI GGCC 2 cut(s) 705, 821
BtgI CCRYGG 3 cut(s) 231, 425, 920
BtrI CACGTC 2 cut(s) 30, 465
BtsI GCAGTG 2 cut(s) 136, 585
BtsIMutI CAGTG 4 cut(s) 136, 524, 585, 843
Cac8I GCNNGC 4 cut(s) 181, 376, 586, 678
CaiI CAGNNNCTG 2 cut(s) 584, 658
CfoI GCGC 2 cut(s) 72, 329
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 4 cut(s) 154, 186, 704, 987
CsiI ACCWGGT 1 cut(s) 989
Csp6I GTAC 3 cut(s) 112, 204, 286
CviAII CATG 6 cut(s) 241, 276, 383, 426, 810, 921
CviQI GTAC 3 cut(s) 112, 204, 286
DdeI CTNAG 3 cut(s) 265, 527, 696
DinI GGCGCC 1 cut(s) 71
DpnI GATC 5 cut(s) 92, 237, 422, 840, 960
DpnII GATC 5 cut(s) 90, 235, 420, 838, 958
EaeI YGGCCR 1 cut(s) 819
EagI CGGCCG 1 cut(s) 819
Ecl136II GAGCTC 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 819
Eco130I CCWWGG 2 cut(s) 425, 920
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 783
Eco47I GGWCC 3 cut(s) 154, 186, 987
Eco52I CGGCCG 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 3 cut(s) 651, 793, 989
EcoT14I CCWWGG 2 cut(s) 425, 920
EcoT38I GRGCYC 1 cut(s) 533
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 425, 920
Esp3I CGTCTC 1 cut(s) 736
FaeI CATG 6 cut(s) 244, 279, 386, 429, 813, 924
FaiI YATR 8 cut(s) 242, 248, 277, 384, 427, 503, 811, 922
FaqI GGGAC 2 cut(s) 282, 306
FatI CATG 6 cut(s) 240, 275, 382, 425, 809, 920
FauI CCCGC 2 cut(s) 51, 383
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
GlaI GCGC 2 cut(s) 71, 328
GluI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
GsaI CCCAGC 2 cut(s) 598, 977
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 705, 821
HapII CCGG 6 cut(s) 73, 99, 180, 324, 645, 818
HhaI GCGC 2 cut(s) 72, 329
Hin1I GRCGYC 2 cut(s) 8, 70
Hin1II CATG 6 cut(s) 244, 279, 386, 429, 813, 924
Hin6I GCGC 2 cut(s) 70, 327
HinP1I GCGC 2 cut(s) 70, 327
HinfI GANTC 2 cut(s) 665, 790
HpaII CCGG 6 cut(s) 73, 99, 180, 324, 645, 818
HphI GGTGA 3 cut(s) 508, 860, 941
Hpy166II GTNNAC 2 cut(s) 630, 789
Hpy188I TCNGA 7 cut(s) 108, 420, 699, 783, 865, 955, 987
Hpy188III TCNNGA 5 cut(s) 12, 130, 669, 733, 962
Hpy8I GTNNAC 2 cut(s) 630, 789
Hpy99I CGWCG 3 cut(s) 13, 31, 194
HpyAV CCTTC 5 cut(s) 28, 370, 633, 748, 920
HpyCH4III ACNGT 3 cut(s) 190, 203, 398
HpyCH4IV ACGT 3 cut(s) 8, 29, 464
HpyCH4V TGCA 8 cut(s) 171, 225, 305, 386, 688, 773, 830, 887
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 83, 133, 436, 648, 827, 884
HpyF3I CTNAG 3 cut(s) 265, 527, 696
HpySE526I ACGT 3 cut(s) 8, 29, 464
Hsp92I GRCGYC 2 cut(s) 8, 70
Hsp92II CATG 6 cut(s) 244, 279, 386, 429, 813, 924
HspAI GCGC 2 cut(s) 70, 327
KasI GGCGCC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 207
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 5 cut(s) 90, 235, 420, 838, 958
LmnI GCTCC 6 cut(s) 61, 132, 477, 514, 536, 978
Lsp1109I GCAGC 3 cut(s) 616, 814, 887
LweI GCATC 4 cut(s) 212, 314, 338, 397
MabI ACCWGGT 1 cut(s) 989
MaeII ACGT 3 cut(s) 8, 29, 464
MaeIII GTNAC 3 cut(s) 514, 848, 896
MalI GATC 5 cut(s) 92, 237, 422, 840, 960
MbiI CCGCTC 1 cut(s) 64
MboI GATC 5 cut(s) 90, 235, 420, 838, 958
MboII GAAGA 4 cut(s) 100, 206, 209, 348
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 3 cut(s) 511, 533, 983
MluCI AATT 3 cut(s) 412, 479, 690
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 1 cut(s) 843
MroNI GCCGGC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 2 cut(s) 432, 747
MslI CAYNNNNRTG 3 cut(s) 387, 846, 857
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 6 cut(s) 73, 99, 180, 324, 645, 818
MspR9I CCNGG 8 cut(s) 74, 100, 324, 645, 653, 795, 818, 991
Mva1269I GAATGC 2 cut(s) 27, 950
MvaI CCWGG 3 cut(s) 653, 795, 991
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 7 cut(s) 64, 83, 133, 436, 648, 827, 884
NaeI GCCGGC 1 cut(s) 181
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 5 cut(s) 74, 100, 324, 645, 818
NcoI CCATGG 2 cut(s) 425, 920
NdeII GATC 5 cut(s) 90, 235, 420, 838, 958
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 6 cut(s) 244, 279, 386, 429, 813, 924
NlaIV GGNNCC 3 cut(s) 71, 205, 499
NmuCI GTSAC 2 cut(s) 514, 848
NspI RCATGY 1 cut(s) 813
OliI CACNNNNGTG 1 cut(s) 846
PciI ACATGT 1 cut(s) 809
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 23, 550
PctI GAATGC 2 cut(s) 27, 950
PdiI GCCGGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 1 cut(s) 665
PkrI GCNGC 6 cut(s) 66, 69, 85, 606, 829, 877
PleI GAGTC 1 cut(s) 784
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 651, 793, 989
PspFI CCCAGC 2 cut(s) 594, 973
PspGI CCWGG 3 cut(s) 651, 793, 989
PspN4I GGNNCC 3 cut(s) 71, 205, 499
PspPI GGNCC 4 cut(s) 154, 186, 704, 987
PspPPI RGGWCCY 1 cut(s) 154
PstNI CAGNNNCTG 2 cut(s) 584, 658
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 3 cut(s) 113, 205, 287
RsaNI GTAC 3 cut(s) 112, 204, 286
RseI CAYNNNNRTG 3 cut(s) 387, 846, 857
SacI GAGCTC 1 cut(s) 533
SaqAI TTAA 2 cut(s) 432, 747
SatI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
Sau3AI GATC 5 cut(s) 90, 235, 420, 838, 958
Sau96I GGNCC 4 cut(s) 154, 186, 704, 987
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 8 cut(s) 74, 100, 324, 645, 653, 795, 818, 991
SduI GDGCHC 3 cut(s) 511, 533, 983
SexAI ACCWGGT 1 cut(s) 989
SfaNI GCATC 4 cut(s) 212, 314, 338, 397
SfoI GGCGCC 1 cut(s) 71
SinI GGWCC 3 cut(s) 154, 186, 987
SmiMI CAYNNNNRTG 3 cut(s) 387, 846, 857
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 3 cut(s) 412, 479, 690
SsiI CCGC 6 cut(s) 58, 64, 67, 84, 376, 878
SspDI GGCGCC 1 cut(s) 69
SstI GAGCTC 1 cut(s) 533
StyD4I CCNGG 8 cut(s) 72, 98, 322, 643, 651, 793, 816, 989
StyI CCWWGG 2 cut(s) 425, 920
TaaI ACNGT 3 cut(s) 190, 203, 398
TaiI ACGT 3 cut(s) 11, 32, 467
TaqI TCGA 5 cut(s) 192, 544, 553, 734, 963
TasI AATT 3 cut(s) 412, 479, 690
TauI GCSGC 3 cut(s) 67, 70, 86
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 2 cut(s) 432, 747
Tru9I TTAA 2 cut(s) 432, 747
TscAI CASTG 4 cut(s) 143, 531, 585, 850
TseFI GTSAC 2 cut(s) 514, 848
TseI GCWGC 3 cut(s) 604, 827, 875
Tsp45I GTSAC 2 cut(s) 514, 848
TspDTI ATGAA 3 cut(s) 270, 405, 588
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 4 cut(s) 143, 531, 585, 850
VpaK11BI GGWCC 3 cut(s) 154, 186, 987
XagI CCTNNNNNAGG 1 cut(s) 666
XapI RAATTY 2 cut(s) 412, 690
XceI RCATGY 1 cut(s) 813
XmnI GAANNNNTTC 1 cut(s) 811
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.