Prupe.4G068200_v2.0.a1

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006018
Physical Location & Seq
Forward (+)
3313428 .. 3318045
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G068200.6

Sequence Viewer

Length: 972 bp
ATGATGACGTCGGGAACGAGAATGCCGACGTGGAAGGAGAGAGAAAACAACAAGAAGAGAGAGAGGAGGCGCAGAGCCATCGCCGCGAAGATCTACTCGGGCCTGAGGATGTACGGAAACTACAAGCTACCGAAGCACTGCGACAACAACGAAGTCCTCAAAGCTCTCTGCAACGAAGCTGGTTGGACCGTCGAAGAAGACGGCACCACTTACCGAAAGGGATGCAAACCTGTGGATCGCATGGACATAATGGGAGGATCTACATCAGCAAGTCCATGTTCTTCATACCAGCCAAGTCCATGTCAATCCTACAATCCAAGTCCTGCCTCTTCTTCATTTCCAAGTCCAGCTCGCTACCCTGCAAATGCAAACGGCAACGCTGATGCCAATTCTCTCATCCCATGGCTTAAAACCCTCTCATCAGGTTCATCATCTGCTACATCCAAGCTTCCCCAACTCTTCATTCAAGGGGGTTCCATAAGTGCTCCAGTCACTCCACCACTGAGCTCCCCAACTTCCCGAACTCCTCGAACCAAAAGTGACTGGGATGAAGCAGTGGCTGGCTCAAACTGGGCAGGGCAGAATTATCCTTTCCTGCCTTCATCCACCCCACCAAGCCCCGGTCGCCAGGTTCTGCCTGATTCAGGATGGCTTGCTGGACTGCAAATTCCCCAGAGTGGCCCATCATCCCCCACATTCAGCCTTGTCTCGAGAAACCCTTTCAACTTGAAGGAGGCTTTGTCGGGTGGAGGGTCTCGGATGTGGACTCCGGGGCAAAGTGGAACATGTTCGCCAGTAGTTGCTGCAAGTGTTGATCACAGTGGAGATGTTCCAATGTCAGATGGAATGGCAGCGGAGTTTGCATTTGGCAGTAACACATCAGGATTAGTGAAACCATGGGAAGGTGAAAGGATTGAGGAATGTGTATCAGATGATCTCGAACTAACTCTTGGAAGCGCTAGAACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
BES1_N

Protein Analysis

324

Amino Acids

34.51

Weight (kDa)

8.8

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 203
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 84, 854
AclWI GGATC 2 cut(s) 243, 265
AcsI RAATTY 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 113
AfeI AGCGCT 1 cut(s) 958
AfiI CCNNNNNNNGG 4 cut(s) 620, 644, 677, 902
AflIII ACRYGT 1 cut(s) 785
AgsI TTSAA 3 cut(s) 467, 724, 730
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 1 cut(s) 627
AjuI GAANNNNNNNTTGG 4 cut(s) 447, 479, 933, 965
AluBI AGCT 6 cut(s) 127, 164, 179, 350, 448, 507
AluI AGCT 6 cut(s) 127, 164, 179, 350, 448, 507
Alw21I GWGCWC 2 cut(s) 487, 509
Alw26I GTCTC 2 cut(s) 712, 759
AlwI GGATC 2 cut(s) 243, 265
AlwNI CAGNNNCTG 2 cut(s) 560, 634
Ama87I CYCGRG 2 cut(s) 97, 709
Aor51HI AGCGCT 1 cut(s) 958
AoxI GGCC 2 cut(s) 100, 679
ApeKI GCWGC 2 cut(s) 803, 851
ApoI RAATTY 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 787
AspLEI GCGC 2 cut(s) 72, 959
AspS9I GGNCC 3 cut(s) 100, 186, 680
AsuC2I CCSGG 2 cut(s) 621, 771
AsuHPI GGTGA 1 cut(s) 917
AvaI CYCGRG 2 cut(s) 97, 709
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 104
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 487, 509
BbvI GCAGC 2 cut(s) 790, 863
BccI CCATC 4 cut(s) 86, 642, 691, 836
BceAI ACGGC 2 cut(s) 217, 388
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 204, 238
BciT130I CCWGG 1 cut(s) 629
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 2 cut(s) 621, 771
BcoDI GTCTC 2 cut(s) 712, 759
BfaI CTAG 1 cut(s) 960
BfoI RGCGCY 1 cut(s) 960
BglII AGATCT 1 cut(s) 90
BisI GCNGC 3 cut(s) 84, 804, 852
BlsI GCNGC 3 cut(s) 85, 805, 853
Bme1390I CCNGG 3 cut(s) 621, 629, 771
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 2 cut(s) 97, 709
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 3 cut(s) 100, 186, 680
BmiI GGNNCC 2 cut(s) 205, 475
BmrFI CCNGG 3 cut(s) 621, 629, 771
BmrI ACTGGG 2 cut(s) 553, 580
BmsI GCATC 2 cut(s) 212, 373
BmuI ACTGGG 2 cut(s) 553, 580
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 471
BpuMI CCSGG 2 cut(s) 621, 771
BsaBI GATNNNNATC 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 759
BsaJI CCNNGG 4 cut(s) 401, 619, 770, 896
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 620, 644, 677, 902
Bse1I ACTGG 4 cut(s) 488, 548, 575, 794
Bse21I CCTNAGG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 262
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 4 cut(s) 401, 619, 770, 896
BseGI GGATG 9 cut(s) 114, 227, 396, 440, 553, 602, 653, 686, 765
BseJI GATNNNNATC 1 cut(s) 262
BseLI CCNNNNNNNGG 4 cut(s) 620, 644, 677, 902
BseMII CTCAG 2 cut(s) 95, 494
BseNI ACTGG 4 cut(s) 488, 548, 575, 794
BseRI GAGGAG 2 cut(s) 79, 516
BseXI GCAGC 2 cut(s) 790, 863
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 2 cut(s) 102, 681
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 2 cut(s) 487, 509
BsiHKCI CYCGRG 2 cut(s) 97, 709
BsiSI CCGG 2 cut(s) 621, 770
BslI CCNNNNNNNGG 4 cut(s) 620, 644, 677, 902
BsmAI GTCTC 2 cut(s) 712, 759
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 2 cut(s) 102, 681
Bso31I GGTCTC 1 cut(s) 759
BsoBI CYCGRG 2 cut(s) 97, 709
Bsp1286I GDGCHC 2 cut(s) 487, 509
Bsp143I GATC 5 cut(s) 90, 235, 257, 814, 934
Bsp19I CCATGG 2 cut(s) 401, 896
BspACI CCGC 2 cut(s) 84, 854
BspANI GGCC 2 cut(s) 102, 681
BspCNI CTCAG 2 cut(s) 96, 495
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 205, 475
BspPI GGATC 2 cut(s) 243, 265
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 759
BsrI ACTGG 4 cut(s) 488, 548, 575, 794
BssECI CCNNGG 4 cut(s) 401, 619, 770, 896
BssMI GATC 5 cut(s) 90, 235, 257, 814, 934
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 2 cut(s) 401, 896
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 190, 821
Bst6I CTCTTC 3 cut(s) 50, 334, 464
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 352, 562, 654
BstDEI CTNAG 2 cut(s) 104, 503
BstDSI CCRYGG 2 cut(s) 401, 896
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 9 cut(s) 114, 227, 396, 440, 553, 602, 653, 686, 765
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 960
BstHHI GCGC 2 cut(s) 72, 959
BstKTI GATC 5 cut(s) 93, 238, 260, 817, 937
BstMAI GTCTC 2 cut(s) 712, 759
BstMBI GATC 5 cut(s) 90, 235, 257, 814, 934
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 4 cut(s) 83, 133, 624, 860
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 1 cut(s) 789
BstSCI CCNGG 3 cut(s) 619, 627, 769
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 790, 863
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 2 cut(s) 90, 257
BstYI RGATCY 2 cut(s) 90, 257
Bsu36I CCTNAGG 1 cut(s) 104
BsuRI GGCC 2 cut(s) 102, 681
BtgI CCRYGG 2 cut(s) 401, 896
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 9 cut(s) 114, 227, 396, 440, 553, 602, 653, 686, 765
BtsI GCAGTG 2 cut(s) 136, 561
BtsIMutI CAGTG 4 cut(s) 136, 500, 561, 826
Cac8I GCNNGC 3 cut(s) 352, 562, 654
CaiI CAGNNNCTG 2 cut(s) 560, 634
CfoI GCGC 2 cut(s) 72, 959
Cfr13I GGNCC 3 cut(s) 100, 186, 680
Csp6I GTAC 1 cut(s) 112
CviAII CATG 6 cut(s) 241, 276, 300, 402, 786, 897
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 104, 503
DpnI GATC 5 cut(s) 92, 237, 259, 816, 936
DpnII GATC 5 cut(s) 90, 235, 257, 814, 934
Eam1104I CTCTTC 3 cut(s) 50, 334, 464
EarI CTCTTC 3 cut(s) 50, 334, 464
Ecl136II GAGCTC 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 401, 896
Eco24I GRGCYC 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 958
Eco53kI GAGCTC 1 cut(s) 507
Eco81I CCTNAGG 1 cut(s) 104
Eco88I CYCGRG 2 cut(s) 97, 709
EcoICRI GAGCTC 1 cut(s) 507
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 401, 896
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 2 cut(s) 401, 896
FaeI CATG 6 cut(s) 244, 279, 303, 405, 789, 900
FaiI YATR 9 cut(s) 242, 248, 277, 286, 301, 403, 479, 787, 898
FatI CATG 6 cut(s) 240, 275, 299, 401, 785, 896
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 84, 804, 852
FokI GGATG 9 cut(s) 121, 234, 383, 427, 560, 589, 660, 673, 772
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 3 cut(s) 84, 804, 852
FspBI CTAG 1 cut(s) 960
GlaI GCGC 2 cut(s) 71, 958
GluI GCNGC 3 cut(s) 84, 804, 852
GsuI CTGGAG 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 960
HaeIII GGCC 2 cut(s) 102, 681
HapII CCGG 2 cut(s) 621, 770
HhaI GCGC 2 cut(s) 72, 959
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 6 cut(s) 244, 279, 303, 405, 789, 900
Hin6I GCGC 2 cut(s) 70, 957
HinP1I GCGC 2 cut(s) 70, 957
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 641, 766
HpaII CCGG 2 cut(s) 621, 770
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 1 cut(s) 765
Hpy188I TCNGA 3 cut(s) 759, 841, 931
Hpy188III TCNNGA 7 cut(s) 12, 519, 645, 709, 711, 882, 938
Hpy8I GTNNAC 1 cut(s) 765
Hpy99I CGWCG 3 cut(s) 13, 31, 194
HpyAV CCTTC 4 cut(s) 28, 609, 724, 896
HpyCH4III ACNGT 2 cut(s) 190, 821
HpyCH4IV ACGT 2 cut(s) 8, 29
HpyCH4V TGCA 7 cut(s) 171, 225, 362, 368, 664, 806, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 133, 624, 860
HpyF3I CTNAG 2 cut(s) 104, 503
HpySE526I ACGT 2 cut(s) 8, 29
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 6 cut(s) 244, 279, 303, 405, 789, 900
HspAI GCGC 2 cut(s) 70, 957
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 5 cut(s) 90, 235, 257, 814, 934
LmnI GCTCC 2 cut(s) 490, 512
Lsp1109I GCAGC 2 cut(s) 790, 863
LweI GCATC 2 cut(s) 212, 373
MaeI CTAG 1 cut(s) 960
MaeII ACGT 2 cut(s) 8, 29
MaeIII GTNAC 3 cut(s) 490, 539, 872
MalI GATC 5 cut(s) 92, 237, 259, 816, 936
MboI GATC 5 cut(s) 90, 235, 257, 814, 934
MboII GAAGA 8 cut(s) 67, 100, 206, 209, 273, 321, 324, 451
MflI RGATCY 2 cut(s) 90, 257
MhlI GDGCHC 2 cut(s) 487, 509
MluCI AATT 3 cut(s) 388, 583, 666
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 787
MseI TTAA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 2 cut(s) 621, 770
MspR9I CCNGG 3 cut(s) 621, 629, 771
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 83, 133, 624, 860
NciI CCSGG 2 cut(s) 621, 771
NcoI CCATGG 2 cut(s) 401, 896
NdeII GATC 5 cut(s) 90, 235, 257, 814, 934
NlaIII CATG 6 cut(s) 244, 279, 303, 405, 789, 900
NlaIV GGNNCC 2 cut(s) 205, 475
NmuCI GTSAC 2 cut(s) 490, 539
NspI RCATGY 1 cut(s) 789
PaeR7I CTCGAG 1 cut(s) 709
PciI ACATGT 1 cut(s) 785
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 23
PctI GAATGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 787
PfeI GAWTC 1 cut(s) 641
PkrI GCNGC 3 cut(s) 85, 805, 853
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PscI ACATGT 1 cut(s) 785
Psp124BI GAGCTC 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 2 cut(s) 205, 475
PspPI GGNCC 3 cut(s) 100, 186, 680
PstNI CAGNNNCTG 2 cut(s) 560, 634
PsuI RGATCY 2 cut(s) 90, 257
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 3 cut(s) 84, 804, 852
Sau3AI GATC 5 cut(s) 90, 235, 257, 814, 934
Sau96I GGNCC 3 cut(s) 100, 186, 680
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 3 cut(s) 621, 629, 771
SduI GDGCHC 2 cut(s) 487, 509
SfaNI GCATC 2 cut(s) 212, 373
Sfr274I CTCGAG 1 cut(s) 709
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 709
SmlI CTYRAG 1 cut(s) 709
SmoI CTYRAG 1 cut(s) 709
Sse9I AATT 3 cut(s) 388, 583, 666
SsiI CCGC 2 cut(s) 84, 854
SspMI CTAG 1 cut(s) 960
SstI GAGCTC 1 cut(s) 509
StyD4I CCNGG 3 cut(s) 619, 627, 769
StyI CCWWGG 2 cut(s) 401, 896
TaaI ACNGT 2 cut(s) 190, 821
TaiI ACGT 2 cut(s) 11, 32
TaqI TCGA 4 cut(s) 192, 529, 710, 939
TasI AATT 3 cut(s) 388, 583, 666
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 4 cut(s) 143, 507, 561, 826
TseFI GTSAC 2 cut(s) 490, 539
TseI GCWGC 2 cut(s) 803, 851
Tsp45I GTSAC 2 cut(s) 490, 539
TspDTI ATGAA 6 cut(s) 273, 324, 417, 451, 564, 591
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 4 cut(s) 143, 507, 561, 826
VpaK11BI GGWCC 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 789
XhoI CTCGAG 1 cut(s) 709
XmnI GAANNNNTTC 1 cut(s) 787
XspI CTAG 1 cut(s) 960
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.