pycom05g27290

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0006018
Physical Location & Seq
Reverse (-)
28302687 .. 28305847
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g27290.1

Sequence Viewer

Length: 996 bp
ATGATGACGTCGGGAACGAGAATGCCGACATGGAAGGAGAGAGAGAACAACAAGAAGCGGGAGCGGCGGCGCCGTGCCATCGCTGCGAAGATCTACTCCGGGCTGAGGATGTACGGTAACTACAAGCTCCCGAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCAACGAAGCCGGATGGACCGTGGAGGAAGATGGCACCACTTACCGAAAGGGATGCAAACCCGTGGATCGCATGGACATAATGGGCGGTTCTACATCAGCAAGTCCATGTTCATCATACCAGCCTAGTCCGTGTGCATCCTACAATCCCAGTCCCGGAGCATCCTACAATCCAAGTCCTGCCTCATCTTCCTTCCCAAGTCCTGCTCGCTACCCTGCAAATGGAAACGGTAATGCTGATGCCAATTCTCTGATCCCATGGCTTAAAACGCTCTCGTCAGGCTCTTCATCCGCCACGTCCAAGCTCCCCCAACTCTTTGTTCAAGGGGGTTCCATAAGTGCTCCAGTCACCCCACCGCTGAGCTCCCCAACTTGTCGAACTCCTCGAACCAAGAGCGATTGGGATGAAGCAGTGGCTGGCTCAAACTGGGCAGGGCAGCATTATCCTTTCCTGCCTTCGTCCACCCCACCAAGCCCTGGTCGCCAGGTTCTCCCTGATTCAGGATGGCTTGCTGGACTGCAAATCCCCCAGAGTGGCCCATCATCCCCAACATTCAGCCTTGTCTCGAGAAACCCTTTTAACTTGAAGGAGGCTTTGTCAGGTGGAGGGTCTCGGATGTGGACTCCCGGGCAAAGTGGAACATGTTCCCCGGCAGTTGCTGCAGGTATTGATCACACCGGAGATGTTCCAATGTCCGACGGGATGGCAGCTGAGTTTGCATTTGGCAGTAACACAACAGGACTAGTAAAGCCATGGGAAGGTGAGAGGATTGAGGAATGCGTATCAGATGATCTCGAACTTACGCTCGGGAGCACTCGAACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
BES1_N

Protein Analysis

332

Amino Acids

35.25

Weight (kDa)

8.74

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 5 - 147 1e-65 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 69, 203
AccB7I CCANNNNNTGG 1 cut(s) 644
AccBSI CCGCTC 1 cut(s) 64
AciI CCGC 6 cut(s) 58, 64, 67, 255, 459, 524
AclWI GGATC 2 cut(s) 243, 415
AcyI GRCGYC 2 cut(s) 8, 70
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 7 cut(s) 105, 323, 389, 644, 668, 701, 926
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 2 cut(s) 491, 754
AhlI ACTAGT 1 cut(s) 910
AjiI CACGTC 1 cut(s) 465
AjnI CCWGG 2 cut(s) 643, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 5 cut(s) 127, 164, 472, 531, 878
AluI AGCT 5 cut(s) 127, 164, 472, 531, 878
Alw21I GWGCWC 3 cut(s) 511, 533, 983
Alw26I GTCTC 2 cut(s) 736, 783
AlwI GGATC 2 cut(s) 243, 415
AlwNI CAGNNNCTG 2 cut(s) 584, 827
Ama87I CYCGRG 3 cut(s) 733, 794, 974
AoxI GGCC 1 cut(s) 703
ApeKI GCWGC 4 cut(s) 83, 604, 827, 875
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 154, 186, 704
AsuC2I CCSGG 5 cut(s) 100, 324, 795, 796, 818
AsuHPI GGTGA 2 cut(s) 508, 941
AvaI CYCGRG 3 cut(s) 733, 794, 974
AvaII GGWCC 2 cut(s) 154, 186
BanI GGYRCC 2 cut(s) 69, 203
BanII GRGCYC 1 cut(s) 533
Bbv12I GWGCWC 3 cut(s) 511, 533, 983
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 70, 616, 814, 887
BccI CCATC 6 cut(s) 86, 177, 194, 666, 715, 865
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 2 cut(s) 645, 653
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 5 cut(s) 100, 324, 795, 796, 818
BcoDI GTCTC 2 cut(s) 736, 783
BcuI ACTAGT 1 cut(s) 910
BfaI CTAG 2 cut(s) 294, 911
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 821
BglII AGATCT 1 cut(s) 90
BisI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 6 cut(s) 66, 69, 85, 606, 829, 877
Bme1390I CCNGG 7 cut(s) 100, 324, 645, 653, 795, 796, 818
Bme18I GGWCC 2 cut(s) 154, 186
BmeT110I CYCGRG 3 cut(s) 733, 794, 974
BmgBI CACGTC 1 cut(s) 465
BmgT120I GGNCC 3 cut(s) 154, 186, 704
BmiI GGNNCC 3 cut(s) 71, 205, 499
BmrFI CCNGG 7 cut(s) 100, 324, 645, 653, 795, 796, 818
BmrI ACTGGG 2 cut(s) 312, 604
BmsI GCATC 4 cut(s) 212, 314, 338, 397
BmuI ACTGGG 2 cut(s) 312, 604
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 527
BpuMI CCSGG 5 cut(s) 100, 324, 795, 796, 818
BsaHI GRCGYC 2 cut(s) 8, 70
BsaI GGTCTC 1 cut(s) 783
BsaJI CCNNGG 7 cut(s) 189, 231, 425, 643, 794, 816, 920
BsaWI WCCGGW 1 cut(s) 845
BsaXI ACNNNNNCTCC 2 cut(s) 749, 779
Bsc4I CCNNNNNNNGG 7 cut(s) 105, 323, 389, 644, 668, 701, 926
Bse1I ACTGG 3 cut(s) 318, 512, 599
BseBI CCWGG 2 cut(s) 645, 653
BseDI CCNNGG 7 cut(s) 189, 231, 425, 643, 794, 816, 920
BseLI CCNNNNNNNGG 7 cut(s) 105, 323, 389, 644, 668, 701, 926
BseMII CTCAG 3 cut(s) 95, 518, 870
BseNI ACTGG 3 cut(s) 318, 512, 599
BseRI GAGGAG 1 cut(s) 540
BseXI GCAGC 4 cut(s) 70, 616, 814, 887
BshFI GGCC 1 cut(s) 705
BshNI GGYRCC 2 cut(s) 69, 203
BsiHKAI GWGCWC 3 cut(s) 511, 533, 983
BsiHKCI CYCGRG 3 cut(s) 733, 794, 974
BsiSI CCGG 6 cut(s) 99, 180, 324, 795, 818, 846
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 7 cut(s) 105, 323, 389, 644, 668, 701, 926
BsmAI GTCTC 2 cut(s) 736, 783
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 2 cut(s) 27, 950
BsnI GGCC 1 cut(s) 705
Bso31I GGTCTC 1 cut(s) 783
BsoBI CYCGRG 3 cut(s) 733, 794, 974
Bsp1286I GDGCHC 3 cut(s) 511, 533, 983
Bsp143I GATC 5 cut(s) 90, 235, 420, 838, 958
Bsp1720I GCTNAGC 1 cut(s) 527
Bsp19I CCATGG 2 cut(s) 425, 920
BspACI CCGC 6 cut(s) 58, 64, 67, 255, 459, 524
BspANI GGCC 1 cut(s) 705
BspCNI CTCAG 3 cut(s) 96, 519, 871
BspLI GGNNCC 3 cut(s) 71, 205, 499
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 1 cut(s) 821
BspPI GGATC 2 cut(s) 243, 415
BspQI GCTCTTC 1 cut(s) 457
BspT107I GGYRCC 2 cut(s) 69, 203
BspTNI GGTCTC 1 cut(s) 783
BsrBI CCGCTC 1 cut(s) 64
BsrI ACTGG 3 cut(s) 318, 512, 599
BssECI CCNNGG 7 cut(s) 189, 231, 425, 643, 794, 816, 920
BssMI GATC 5 cut(s) 90, 235, 420, 838, 958
BssNI GRCGYC 2 cut(s) 8, 70
BssT1I CCWWGG 2 cut(s) 425, 920
Bst2UI CCWGG 2 cut(s) 645, 653
Bst4CI ACNGT 3 cut(s) 116, 190, 398
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 2 cut(s) 8, 70
BstAPI GCANNNNNTGC 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 376, 586, 678
BstDEI CTNAG 3 cut(s) 104, 527, 879
BstDSI CCRYGG 4 cut(s) 189, 231, 425, 920
BstENI CCTNNNNNAGG 1 cut(s) 666
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 5 cut(s) 93, 238, 423, 841, 961
BstMAI GTCTC 2 cut(s) 736, 783
BstMBI GATC 5 cut(s) 90, 235, 420, 838, 958
BstMWI GCNNNNNNNGC 7 cut(s) 64, 83, 133, 436, 648, 827, 884
BstNI CCWGG 2 cut(s) 645, 653
BstNSI RCATGY 1 cut(s) 813
BstSCI CCNGG 7 cut(s) 98, 322, 643, 651, 793, 794, 816
BstSFI CTRYAG 1 cut(s) 828
BstV1I GCAGC 4 cut(s) 70, 616, 814, 887
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 705
BtgI CCRYGG 4 cut(s) 189, 231, 425, 920
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 465
BtsI GCAGTG 2 cut(s) 136, 585
BtsIMutI CAGTG 2 cut(s) 136, 585
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 3 cut(s) 376, 586, 678
CaiI CAGNNNCTG 2 cut(s) 584, 827
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 154, 186, 704
Cfr9I CCCGGG 1 cut(s) 794
Csp6I GTAC 1 cut(s) 112
CviAII CATG 6 cut(s) 30, 241, 276, 426, 810, 921
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 3 cut(s) 104, 527, 879
DinI GGCGCC 1 cut(s) 71
DpnI GATC 5 cut(s) 92, 237, 422, 840, 960
DpnII GATC 5 cut(s) 90, 235, 420, 838, 958
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
EciI GGCGGA 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 425, 920
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 783
Eco47I GGWCC 2 cut(s) 154, 186
Eco53kI GAGCTC 1 cut(s) 531
Eco88I CYCGRG 3 cut(s) 733, 794, 974
EcoICRI GAGCTC 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 643, 651
EcoT14I CCWWGG 2 cut(s) 425, 920
EcoT38I GRGCYC 1 cut(s) 533
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 425, 920
FaeI CATG 6 cut(s) 33, 244, 279, 429, 813, 924
FaiI YATR 9 cut(s) 31, 242, 248, 277, 286, 427, 503, 811, 922
FaqI GGGAC 1 cut(s) 306
FatI CATG 6 cut(s) 29, 240, 275, 425, 809, 920
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
FspBI CTAG 2 cut(s) 294, 911
GlaI GCGC 1 cut(s) 71
GluI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 1 cut(s) 705
HapII CCGG 6 cut(s) 99, 180, 324, 795, 818, 846
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 2 cut(s) 8, 70
Hin1II CATG 6 cut(s) 33, 244, 279, 429, 813, 924
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 2 cut(s) 665, 790
HpaII CCGG 6 cut(s) 99, 180, 324, 795, 818, 846
HphI GGTGA 2 cut(s) 508, 941
Hpy166II GTNNAC 2 cut(s) 630, 789
Hpy188I TCNGA 4 cut(s) 420, 783, 865, 955
Hpy188III TCNNGA 7 cut(s) 12, 130, 669, 733, 735, 962, 976
Hpy8I GTNNAC 2 cut(s) 630, 789
Hpy99I CGWCG 2 cut(s) 13, 869
HpyAV CCTTC 5 cut(s) 28, 370, 633, 748, 920
HpyCH4III ACNGT 3 cut(s) 116, 190, 398
HpyCH4IV ACGT 2 cut(s) 8, 464
HpyCH4V TGCA 7 cut(s) 171, 225, 305, 386, 688, 830, 887
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 83, 133, 436, 648, 827, 884
HpyF3I CTNAG 3 cut(s) 104, 527, 879
HpySE526I ACGT 2 cut(s) 8, 464
Hsp92I GRCGYC 2 cut(s) 8, 70
Hsp92II CATG 6 cut(s) 33, 244, 279, 429, 813, 924
HspAI GCGC 1 cut(s) 70
KasI GGCGCC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 5 cut(s) 90, 235, 420, 838, 958
LguI GCTCTTC 1 cut(s) 457
LmnI GCTCC 7 cut(s) 61, 132, 326, 477, 514, 536, 978
Lsp1109I GCAGC 4 cut(s) 70, 616, 814, 887
LweI GCATC 4 cut(s) 212, 314, 338, 397
MaeI CTAG 2 cut(s) 294, 911
MaeII ACGT 2 cut(s) 8, 464
MaeIII GTNAC 3 cut(s) 116, 514, 896
MalI GATC 5 cut(s) 92, 237, 422, 840, 960
MbiI CCGCTC 1 cut(s) 64
MboI GATC 5 cut(s) 90, 235, 420, 838, 958
MboII GAAGA 4 cut(s) 100, 209, 348, 444
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 3 cut(s) 511, 533, 983
MluCI AATT 1 cut(s) 412
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 1 cut(s) 888
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 2 cut(s) 432, 747
MspA1I CMGCKG 2 cut(s) 526, 878
MspI CCGG 6 cut(s) 99, 180, 324, 795, 818, 846
MspR9I CCNGG 7 cut(s) 100, 324, 645, 653, 795, 796, 818
Mva1269I GAATGC 2 cut(s) 27, 950
MvaI CCWGG 2 cut(s) 645, 653
MwoI GCNNNNNNNGC 7 cut(s) 64, 83, 133, 436, 648, 827, 884
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 5 cut(s) 100, 324, 795, 796, 818
NcoI CCATGG 2 cut(s) 425, 920
NdeII GATC 5 cut(s) 90, 235, 420, 838, 958
NlaIII CATG 6 cut(s) 33, 244, 279, 429, 813, 924
NlaIV GGNNCC 3 cut(s) 71, 205, 499
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 813
PaeR7I CTCGAG 1 cut(s) 733
PciI ACATGT 1 cut(s) 809
PciSI GCTCTTC 1 cut(s) 457
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 23, 550
PctI GAATGC 2 cut(s) 27, 950
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 1 cut(s) 665
PflMI CCANNNNNTGG 1 cut(s) 644
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 6 cut(s) 66, 69, 85, 606, 829, 877
PleI GAGTC 1 cut(s) 784
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 643, 651
PspGI CCWGG 2 cut(s) 643, 651
PspN4I GGNNCC 3 cut(s) 71, 205, 499
PspPI GGNCC 3 cut(s) 154, 186, 704
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 2 cut(s) 584, 827
PsuI RGATCY 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 432, 747
SatI GCNGC 6 cut(s) 65, 68, 84, 605, 828, 876
Sau3AI GATC 5 cut(s) 90, 235, 420, 838, 958
Sau96I GGNCC 3 cut(s) 154, 186, 704
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 7 cut(s) 100, 324, 645, 653, 795, 796, 818
SduI GDGCHC 3 cut(s) 511, 533, 983
SfaNI GCATC 4 cut(s) 212, 314, 338, 397
SfcI CTRYAG 1 cut(s) 828
SfoI GGCGCC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 733
SinI GGWCC 2 cut(s) 154, 186
SlaI CTCGAG 1 cut(s) 733
SmaI CCCGGG 1 cut(s) 796
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
SpeI ACTAGT 1 cut(s) 910
Sse9I AATT 1 cut(s) 412
SsiI CCGC 6 cut(s) 58, 64, 67, 255, 459, 524
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 2 cut(s) 294, 911
SstI GAGCTC 1 cut(s) 533
StyD4I CCNGG 7 cut(s) 98, 322, 643, 651, 793, 794, 816
StyI CCWWGG 2 cut(s) 425, 920
TaaI ACNGT 3 cut(s) 116, 190, 398
TaiI ACGT 2 cut(s) 11, 467
TaqI TCGA 5 cut(s) 544, 553, 734, 963, 985
TasI AATT 1 cut(s) 412
TauI GCSGC 2 cut(s) 67, 70
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 2 cut(s) 432, 747
Tru9I TTAA 2 cut(s) 432, 747
TscAI CASTG 2 cut(s) 143, 585
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 4 cut(s) 83, 604, 827, 875
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 3 cut(s) 270, 444, 588
TspGWI ACGGA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 794
TspRI CASTG 2 cut(s) 143, 585
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 154, 186
XagI CCTNNNNNAGG 1 cut(s) 666
XceI RCATGY 1 cut(s) 813
XhoI CTCGAG 1 cut(s) 733
XmaI CCCGGG 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 2 cut(s) 294, 911
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.