Rh5BG087800

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006018
Physical Location & Seq
Forward (+)
7607683 .. 7610893
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG087800.1

Sequence Viewer

Length: 990 bp
ATGATGACGTCGGGGACGAGAATGCCTACGTGGAAGGAGAGGGAGAACAACAAGAAGCGGGAGCGGAGGCGCCGCGCCATCGCCGCGAAGATCTACTCCGGCCTCCGTATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCAACGAAGCCGGTTGGACCGTCGAAGAAGACGGCACCACTTACCGAAAGGGATGCAAACCTGTGGATCGCATGGACATAATGGGAGGGTCGACATCAGCTAGTCCATGTTCATCATACCAACCGAGTCCATGTGCGTCCTACAATCCGAGTCCATGTGCATCGTACAATCCGAGCCCTGCCTCGTCTTCCTTCCCGAGTCCAGCTCGCTATCCAGCGAATGCAAACGGCAATGCTGATGCCAATTCTCTCATCCCATGGCTTAAAACCCTCTCATCGTCAGGCTCATCCTCTGCCACATCCAAGCTCCCGCAGCTGTTCATTCCAGGGGGCTCCATTAGTGCTCCAGTTACACCACCGCTGAGCTCCCCAACTTCGCGTACTCCTCGAACCAAAAGCGACTGGGATGAAGCTGTGGCTGGCTCAAACTGGGGTAGCCAGCATTATTCTTTCCTGCCCTCTTCCACCCCGCCAAGCCCCGGTCGCCAGGTTCTTCCTGATTCGGGATGGCTTGCCGGGCTCCAAAGCGGGCCGTCATCCCCCACATTCAGCCTGGTCTCACGGAACCCTTTTGGGTTGAAGGAGGCCTTGTCAGGTGGCGGGTCTCGGATGTGGACTCCCGGGCAAAGCGGAACATGTTCCCCAGTAGTTGCTGCAGGTCTAGACCACAGTGGCGATGTTCCAATGGCAGATGGGATGGCAGCTGAGTTTGCCTTTGGGAGCAATGCAACAGGGTTAGTGAAACCATGGGAAGGTGAGAGGATCGAGGAATGTGTATCGGATGATCTTGAACTCACTCTTGGGAGCACGAAAACTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
BES1_N

Protein Analysis

329

Amino Acids

34.91

Weight (kDa)

8.73

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 5 - 147 1.5e-66 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 815
AccB1I GGYRCC 2 cut(s) 69, 203
AccBSI CCGCTC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 260
AccII CGCG 3 cut(s) 75, 86, 547
AclWI GGATC 2 cut(s) 243, 938
AcyI GRCGYC 2 cut(s) 8, 70
AfaI GTAC 3 cut(s) 113, 335, 550
AfiI CCNNNNNNNGG 3 cut(s) 647, 671, 920
AflIII ACRYGT 1 cut(s) 803
AgsI TTSAA 2 cut(s) 748, 959
AjnI CCWGG 3 cut(s) 493, 654, 720
AjuI GAANNNNNNNTTGG 2 cut(s) 951, 983
AluBI AGCT 9 cut(s) 127, 164, 269, 374, 475, 484, 534, 581, 872
AluI AGCT 9 cut(s) 127, 164, 269, 374, 475, 484, 534, 581, 872
Alw21I GWGCWC 3 cut(s) 514, 536, 977
Alw26I GTCTC 2 cut(s) 730, 777
AlwI GGATC 2 cut(s) 243, 938
Ama87I CYCGRG 2 cut(s) 364, 788
AoxI GGCC 3 cut(s) 100, 698, 753
ApeKI GCWGC 3 cut(s) 481, 821, 869
Asp700I GAANNNNTTC 1 cut(s) 805
AspLEI GCGC 2 cut(s) 72, 77
AspS9I GGNCC 3 cut(s) 154, 186, 698
AsuC2I CCSGG 4 cut(s) 648, 685, 789, 790
AsuHPI GGTGA 1 cut(s) 935
AvaI CYCGRG 2 cut(s) 364, 788
AvaII GGWCC 2 cut(s) 154, 186
BanI GGYRCC 2 cut(s) 69, 203
BanII GRGCYC 4 cut(s) 347, 503, 536, 690
BbsI GAAGAC 2 cut(s) 204, 348
Bbv12I GWGCWC 3 cut(s) 514, 536, 977
BbvI GCAGC 3 cut(s) 493, 808, 881
BccI CCATC 4 cut(s) 86, 669, 854, 859
BceAI ACGGC 4 cut(s) 130, 217, 412, 685
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 3 cut(s) 495, 656, 722
BcnI CCSGG 4 cut(s) 648, 685, 789, 790
BcoDI GTCTC 2 cut(s) 730, 777
BfaI CTAG 3 cut(s) 270, 830, 984
BfmI CTRYAG 1 cut(s) 822
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 815
BglII AGATCT 1 cut(s) 90
BisI GCNGC 5 cut(s) 73, 84, 482, 822, 870
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 5 cut(s) 74, 85, 483, 823, 871
Bme1390I CCNGG 7 cut(s) 495, 648, 656, 685, 722, 789, 790
Bme18I GGWCC 2 cut(s) 154, 186
BmeT110I CYCGRG 2 cut(s) 364, 788
BmgT120I GGNCC 3 cut(s) 154, 186, 698
BmiI GGNNCC 5 cut(s) 71, 205, 502, 689, 734
BmrFI CCNGG 7 cut(s) 495, 648, 656, 685, 722, 789, 790
BmrI ACTGGG 3 cut(s) 580, 607, 806
BmsI GCATC 3 cut(s) 212, 338, 397
BmuI ACTGGG 3 cut(s) 580, 607, 806
BpiI GAAGAC 2 cut(s) 204, 348
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 530
BpuMI CCSGG 4 cut(s) 648, 685, 789, 790
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 8, 70
BsaI GGTCTC 2 cut(s) 730, 777
BsaJI CCNNGG 5 cut(s) 425, 494, 646, 788, 914
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 671, 920
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 4 cut(s) 515, 575, 602, 812
Bse3DI GCAATG 2 cut(s) 406, 898
BseBI CCWGG 3 cut(s) 495, 656, 722
BseDI CCNNGG 5 cut(s) 425, 494, 646, 788, 914
BseLI CCNNNNNNNGG 3 cut(s) 647, 671, 920
BseMI GCAATG 2 cut(s) 406, 898
BseMII CTCAG 2 cut(s) 521, 864
BseNI ACTGG 4 cut(s) 515, 575, 602, 812
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 3 cut(s) 493, 808, 881
Bsh1236I CGCG 3 cut(s) 75, 86, 547
Bsh1285I CGRYCG 1 cut(s) 652
BshFI GGCC 3 cut(s) 102, 700, 755
BshNI GGYRCC 2 cut(s) 69, 203
BsiEI CGRYCG 1 cut(s) 652
BsiHKAI GWGCWC 3 cut(s) 514, 536, 977
BsiHKCI CYCGRG 2 cut(s) 364, 788
BsiSI CCGG 5 cut(s) 99, 180, 648, 684, 789
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 647, 671, 920
BsmAI GTCTC 2 cut(s) 730, 777
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 2 cut(s) 27, 394
BsnI GGCC 3 cut(s) 102, 700, 755
Bso31I GGTCTC 2 cut(s) 730, 777
BsoBI CYCGRG 2 cut(s) 364, 788
Bsp1286I GDGCHC 6 cut(s) 347, 503, 514, 536, 690, 977
Bsp143I GATC 4 cut(s) 90, 235, 930, 952
Bsp1720I GCTNAGC 1 cut(s) 530
Bsp19I CCATGG 2 cut(s) 425, 914
BspANI GGCC 3 cut(s) 102, 700, 755
BspCNI CTCAG 2 cut(s) 522, 865
BspFNI CGCG 3 cut(s) 75, 86, 547
BspLI GGNNCC 5 cut(s) 71, 205, 502, 689, 734
BspMAI CTGCAG 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 2 cut(s) 243, 938
BspT107I GGYRCC 2 cut(s) 69, 203
BspTNI GGTCTC 2 cut(s) 730, 777
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 406, 898
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 4 cut(s) 515, 575, 602, 812
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 5 cut(s) 425, 494, 646, 788, 914
BssMI GATC 4 cut(s) 90, 235, 930, 952
BssNI GRCGYC 2 cut(s) 8, 70
BssT1I CCWWGG 2 cut(s) 425, 914
Bst2UI CCWGG 3 cut(s) 495, 656, 722
Bst4CI ACNGT 2 cut(s) 190, 839
Bst6I CTCTTC 1 cut(s) 634
BstACI GRCGYC 2 cut(s) 8, 70
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 5 cut(s) 376, 589, 608, 681, 698
BstDEI CTNAG 2 cut(s) 530, 873
BstDSI CCRYGG 2 cut(s) 425, 914
BstFNI CGCG 3 cut(s) 75, 86, 547
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 77
BstKTI GATC 4 cut(s) 93, 238, 933, 955
BstMAI GTCTC 2 cut(s) 730, 777
BstMBI GATC 4 cut(s) 90, 235, 930, 952
BstMCI CGRYCG 1 cut(s) 652
BstMWI GCNNNNNNNGC 6 cut(s) 83, 133, 481, 651, 685, 878
BstNI CCWGG 3 cut(s) 495, 656, 722
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 7 cut(s) 493, 646, 654, 683, 720, 787, 788
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 3 cut(s) 75, 86, 547
BstV1I GCAGC 3 cut(s) 493, 808, 881
BstV2I GAAGAC 2 cut(s) 204, 348
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 3 cut(s) 102, 700, 755
BtgI CCRYGG 2 cut(s) 425, 914
BtgZI GCGATG 2 cut(s) 64, 858
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 844
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 5 cut(s) 376, 589, 608, 681, 698
CfoI GCGC 2 cut(s) 72, 77
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 154, 186, 698
Cfr9I CCCGGG 1 cut(s) 788
CseI GACGC 1 cut(s) 294
Csp6I GTAC 3 cut(s) 112, 334, 549
CviAII CATG 7 cut(s) 241, 276, 300, 324, 426, 804, 915
CviQI GTAC 3 cut(s) 112, 334, 549
DdeI CTNAG 2 cut(s) 530, 873
DinI GGCGCC 1 cut(s) 71
DpnI GATC 4 cut(s) 92, 237, 932, 954
DpnII GATC 4 cut(s) 90, 235, 930, 952
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 425, 914
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 4 cut(s) 347, 503, 536, 690
Eco31I GGTCTC 2 cut(s) 730, 777
Eco47I GGWCC 2 cut(s) 154, 186
Eco53kI GAGCTC 1 cut(s) 534
Eco88I CYCGRG 2 cut(s) 364, 788
EcoICRI GAGCTC 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 493, 654, 720
EcoT14I CCWWGG 2 cut(s) 425, 914
EcoT38I GRGCYC 4 cut(s) 347, 503, 536, 690
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 425, 914
FaeI CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 28
FatI CATG 7 cut(s) 240, 275, 299, 323, 425, 803, 914
FauI CCCGC 5 cut(s) 51, 486, 645, 689, 761
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 5 cut(s) 73, 84, 482, 822, 870
FriOI GRGCYC 4 cut(s) 347, 503, 536, 690
Fsp4HI GCNGC 5 cut(s) 73, 84, 482, 822, 870
FspBI CTAG 3 cut(s) 270, 830, 984
GlaI GCGC 2 cut(s) 71, 76
GluI GCNGC 5 cut(s) 73, 84, 482, 822, 870
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 102, 700, 755
HapII CCGG 5 cut(s) 99, 180, 648, 684, 789
HgaI GACGC 1 cut(s) 294
HhaI GCGC 2 cut(s) 72, 77
Hin1I GRCGYC 2 cut(s) 8, 70
Hin1II CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
Hin6I GCGC 2 cut(s) 70, 75
HinP1I GCGC 2 cut(s) 70, 75
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 5 cut(s) 295, 319, 367, 668, 784
HpaII CCGG 5 cut(s) 99, 180, 648, 684, 789
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 2 cut(s) 261, 783
Hpy188I TCNGA 4 cut(s) 318, 342, 777, 949
Hpy188III TCNNGA 5 cut(s) 364, 665, 672, 830, 956
Hpy8I GTNNAC 2 cut(s) 261, 783
Hpy99I CGWCG 2 cut(s) 13, 194
HpyAV CCTTC 4 cut(s) 28, 370, 742, 914
HpyCH4III ACNGT 2 cut(s) 190, 839
HpyCH4IV ACGT 2 cut(s) 8, 29
HpyCH4V TGCA 6 cut(s) 171, 225, 329, 392, 824, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 133, 481, 651, 685, 878
HpyF3I CTNAG 2 cut(s) 530, 873
HpySE526I ACGT 2 cut(s) 8, 29
Hsp92I GRCGYC 2 cut(s) 8, 70
Hsp92II CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
HspAI GCGC 2 cut(s) 70, 75
KasI GGCGCC 1 cut(s) 69
Kzo9I GATC 4 cut(s) 90, 235, 930, 952
LmnI GCTCC 9 cut(s) 61, 132, 480, 506, 517, 539, 693, 888, 972
Lsp1109I GCAGC 3 cut(s) 493, 808, 881
LweI GCATC 3 cut(s) 212, 338, 397
MaeI CTAG 3 cut(s) 270, 830, 984
MaeII ACGT 2 cut(s) 8, 29
MaeIII GTNAC 1 cut(s) 517
MalI GATC 4 cut(s) 92, 237, 932, 954
MbiI CCGCTC 1 cut(s) 64
MboI GATC 4 cut(s) 90, 235, 930, 952
MboII GAAGA 6 cut(s) 100, 206, 209, 348, 621, 653
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 6 cut(s) 347, 503, 514, 536, 690, 977
MluCI AATT 1 cut(s) 412
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 4 cut(s) 304, 328, 376, 778
MmeI TCCRAC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 805
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 3 cut(s) 484, 529, 872
MspI CCGG 5 cut(s) 99, 180, 648, 684, 789
MspR9I CCNGG 7 cut(s) 495, 648, 656, 685, 722, 789, 790
MteI GCGCNGCGC 1 cut(s) 73
Mva1269I GAATGC 2 cut(s) 27, 394
MvaI CCWGG 3 cut(s) 495, 656, 722
MvnI CGCG 3 cut(s) 75, 86, 547
MwoI GCNNNNNNNGC 6 cut(s) 83, 133, 481, 651, 685, 878
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 4 cut(s) 648, 685, 789, 790
NcoI CCATGG 2 cut(s) 425, 914
NdeII GATC 4 cut(s) 90, 235, 930, 952
NlaIII CATG 7 cut(s) 244, 279, 303, 327, 429, 807, 918
NlaIV GGNNCC 5 cut(s) 71, 205, 502, 689, 734
NspI RCATGY 1 cut(s) 807
PceI AGGCCT 1 cut(s) 755
PciI ACATGT 1 cut(s) 803
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 338
PctI GAATGC 2 cut(s) 27, 394
PdmI GAANNNNTTC 1 cut(s) 805
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 5 cut(s) 74, 85, 483, 823, 871
PleI GAGTC 4 cut(s) 303, 327, 375, 778
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 4 cut(s) 303, 327, 375, 778
Ppu21I YACGTR 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 803
Psp124BI GAGCTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 493, 654, 720
PspGI CCWGG 3 cut(s) 493, 654, 720
PspN4I GGNNCC 5 cut(s) 71, 205, 502, 689, 734
PspPI GGNCC 3 cut(s) 154, 186, 698
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 1 cut(s) 90
PvuII CAGCTG 2 cut(s) 484, 872
RsaI GTAC 3 cut(s) 113, 335, 550
RsaNI GTAC 3 cut(s) 112, 334, 549
SacI GAGCTC 1 cut(s) 536
SalI GTCGAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 5 cut(s) 73, 84, 482, 822, 870
Sau3AI GATC 4 cut(s) 90, 235, 930, 952
Sau96I GGNCC 3 cut(s) 154, 186, 698
SchI GAGTC 4 cut(s) 304, 328, 376, 778
ScrFI CCNGG 7 cut(s) 495, 648, 656, 685, 722, 789, 790
SduI GDGCHC 6 cut(s) 347, 503, 514, 536, 690, 977
SfaNI GCATC 3 cut(s) 212, 338, 397
SfcI CTRYAG 1 cut(s) 822
SfoI GGCGCC 1 cut(s) 71
SinI GGWCC 2 cut(s) 154, 186
SmaI CCCGGG 1 cut(s) 790
Sse9I AATT 1 cut(s) 412
SseBI AGGCCT 1 cut(s) 755
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 3 cut(s) 270, 830, 984
SstI GAGCTC 1 cut(s) 536
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 7 cut(s) 493, 646, 654, 683, 720, 787, 788
StyI CCWWGG 2 cut(s) 425, 914
TaaI ACNGT 2 cut(s) 190, 839
TaiI ACGT 2 cut(s) 11, 32
TaqI TCGA 4 cut(s) 192, 260, 556, 933
TasI AATT 1 cut(s) 412
TauI GCSGC 2 cut(s) 75, 86
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 143, 844
TseI GCWGC 3 cut(s) 481, 821, 869
TspDTI ATGAA 3 cut(s) 270, 478, 591
TspGWI ACGGA 2 cut(s) 95, 745
TspMI CCCGGG 1 cut(s) 788
TspRI CASTG 2 cut(s) 143, 844
VpaK11BI GGWCC 2 cut(s) 154, 186
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 1 cut(s) 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmaI CCCGGG 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 805
XspI CTAG 3 cut(s) 270, 830, 984
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.