Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Forward (+)

10370433 .. 10372045

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAGAGGTGAAGAAGGATGTATACTCGGTTTGGGCATTACCAGATGAGGAATCGGAGCCCCGATTCAAAAAGCTAATGGAAGCTTTGAGATCCGAATTCACTGGCCCAAGATTCGTTCCTCACGTCACCGTCGCCGTATCTGCTTATCTGACGGCAGACGAAGCCAAGAAGATGTTCGAATCAGCTTGCGACGGTCTTAAAGCTTACACCGCCACCGTTGATCGCGTCTCCACCGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAAACCACCCCTGAGGTAATGGAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCCACTACCACACCTTACATGCCGCATTTGAGCCTGCTTTACGCTGAGTTGACAGAGGAAGAGAAGAAGAATGCGCAGGAGAAAGCTTACACGCTCGATAGCAGCCTCGATGGACTCAGTTTCCGGTTAAACCGACTTGCTCTATGCAAAACCGATACCGAGGACAAGACTCTAGAGACATGGGAGACAGTGGCTGTATGCAATCTCAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

4.91

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPDase	PF07823	10 - 150	1.7e-08	Cyclic phosphodiesterase-like protein
2_5_RNA_ligase2	PF13563	27 - 163	2e-07	2'-5' RNA ligase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	228
AciI	CCGC	2 cut(s)	213, 353
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	70, 254, 325
AjiI	CACGTC	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	76, 86, 188, 206, 299, 416
AluI	AGCT	6 cut(s)	76, 86, 188, 206, 299, 416
Alw26I	GTCTC	3 cut(s)	235, 500, 509
AlwI	GGATC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	2 cut(s)	176, 320
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	22, 121, 314
AsuII	TTCGAA	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	63
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	2 cut(s)	122, 171
BcoDI	GTCTC	3 cut(s)	235, 500, 509
BfaI	CTAG	1 cut(s)	503
BisI	GCNGC	2 cut(s)	353, 433
BlsI	GCNGC	2 cut(s)	354, 434
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	60
Bpu14I	TTCGAA	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	2 cut(s)	236, 453
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	276, 366, 460
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	237, 454
BsmAI	GTCTC	3 cut(s)	235, 500, 509
BsmBI	CGTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	92, 223
BspACI	CCGC	2 cut(s)	213, 353
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	3 cut(s)	277, 367, 459
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	92, 223
BssNAI	GTATAC	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	25
Bst4CI	ACNGT	5 cut(s)	133, 197, 220, 311, 520
Bst6I	CTCTTC	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	190, 365
BstDEI	CTNAG	3 cut(s)	285, 375, 446
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	95, 226
BstMAI	GTCTC	3 cut(s)	235, 500, 509
BstMBI	GATC	2 cut(s)	92, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 164, 212
BstNSI	RCATGY	1 cut(s)	352
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BstZ17I	GTATAC	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	102, 307, 525
Cac8I	GCNNGC	2 cut(s)	190, 365
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	217
CviAII	CATG	2 cut(s)	349, 510
DdeI	CTNAG	3 cut(s)	285, 375, 446
DpnI	GATC	2 cut(s)	94, 225
DpnII	GATC	2 cut(s)	92, 223
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	2 cut(s)	352, 513
FaiI	YATR	5 cut(s)	25, 350, 475, 511, 529
FatI	CATG	2 cut(s)	348, 509
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	353, 433
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	353, 433
FspBI	CTAG	1 cut(s)	503
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	353, 433
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	237, 454
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	2 cut(s)	352, 513
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	3 cut(s)	84, 204, 414
HinfI	GANTC	6 cut(s)	53, 66, 114, 182, 444, 499
HpaII	CCGG	2 cut(s)	237, 454
HphI	GGTGA	3 cut(s)	22, 121, 314
Hpy166II	GTNNAC	3 cut(s)	25, 305, 381
Hpy188I	TCNGA	3 cut(s)	58, 97, 153
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	3 cut(s)	25, 305, 381
Hpy99I	CGWCG	2 cut(s)	137, 197
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	5 cut(s)	133, 197, 220, 311, 520
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	477, 531
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 164, 212
HpyF3I	CTNAG	3 cut(s)	285, 375, 446
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	352, 513
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	92, 223
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	57, 90, 250, 285, 297, 377, 392, 467
Lsp1109I	GCAGC	1 cut(s)	444
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	94, 225
MboI	GATC	2 cut(s)	92, 223
MboII	GAAGA	7 cut(s)	17, 25, 184, 238, 401, 406, 409
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	98, 325
MlyI	GAGTC	2 cut(s)	438, 493
MnlI	CCTC	6 cut(s)	43, 132, 280, 379, 446, 484
MroXI	GAANNNNTTC	2 cut(s)	176, 320
MseI	TTAA	3 cut(s)	201, 458, 544
MspI	CCGG	2 cut(s)	237, 454
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	143, 164, 212
NdeII	GATC	2 cut(s)	92, 223
NlaIII	CATG	2 cut(s)	352, 513
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	405
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	406
PdmI	GAANNNNTTC	2 cut(s)	176, 320
PfeI	GAWTC	4 cut(s)	53, 66, 114, 182
PkrI	GCNGC	2 cut(s)	354, 434
PleI	GAGTC	2 cut(s)	438, 493
PpsI	GAGTC	2 cut(s)	438, 493
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	201, 458, 544
SatI	GCNGC	2 cut(s)	353, 433
Sau3AI	GATC	2 cut(s)	92, 223
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	438, 493
SduI	GDGCHC	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	180
Sse9I	AATT	2 cut(s)	98, 325
SsiI	CCGC	2 cut(s)	213, 353
SspMI	CTAG	1 cut(s)	503
TaaI	ACNGT	5 cut(s)	133, 197, 220, 311, 520
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	180, 426, 438
TasI	AATT	2 cut(s)	98, 325
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	53, 66, 114, 182
Tru1I	TTAA	3 cut(s)	201, 458, 544
Tru9I	TTAA	3 cut(s)	201, 458, 544
TscAI	CASTG	3 cut(s)	109, 314, 525
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	3 cut(s)	109, 314, 525
XapI	RAATTY	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	2 cut(s)	176, 320
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.