Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Forward (+)

4142498 .. 4144076

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06860.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCGTATTCCGGCCGACGAAGTTAATAGCACAATCCATAATGCACAAAGAAAAGAGACGTATACAGTCTGGGGCATTCCACCAGATCACGTCGTAGAAAGGATCAAGAAGATAATAGAGGCCCTCCGAGCCGAGTTTGGAGGACCGGAGATCGAACCTCACATTACCGTCGTCGGGTCTGTCCTTTTAAACCATGACTATGTGATCAAGCAATTCATCAATGGTTGCCAAAATATAGAACCCTACACTTGTAAAGTTGATCAGGTTGTTACTCGCAAATTCTATTACCAACCTGTCTCCCTCCTCATTCATCCATGTCAATGGGTTGGACACTTTGGTGGTTATCTACATCGTTGTAATGCTCATATGCCGCATTTGAGCCTCCTCTATGGGAATTTGACTGAGGAAGAGAGGAAAAGAGCTCTAGAAAAAGTTACTGAGCTGGACGACAGCATTGCTAGCCTCAAGTTCACCATGAGTCGCCTAGTTTTGTACAAAACCCACAATGAAGCTAGAGACCAACATTCTTGGGAGAAGGTTATGGAATACAACCTTCGACCCCGAAATCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

192

Amino Acids

22.29

Weight (kDa)

7.18

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	278, 394
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	91
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	4 cut(s)	422, 442, 512, 571
AluI	AGCT	4 cut(s)	422, 442, 512, 571
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	3 cut(s)	50, 301, 510
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	12, 120
ApoI	RAATTY	2 cut(s)	278, 394
AspS9I	GGNCC	2 cut(s)	121, 143
AsuHPI	GGTGA	1 cut(s)	463
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BclI	TGATCA	2 cut(s)	204, 259
BcoDI	GTCTC	3 cut(s)	50, 301, 510
BfaI	CTAG	5 cut(s)	425, 459, 485, 513, 574
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	121, 143
BmtI	GCTAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	453
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	393, 429
BseRI	GAGGAG	2 cut(s)	293, 374
BseX3I	CGGCCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	14, 122
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	11, 146
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	3 cut(s)	50, 301, 510
BsmBI	CGTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	14, 122
Bso31I	GGTCTC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	5 cut(s)	85, 102, 150, 204, 259
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	14, 122
BspCNI	CTCAG	2 cut(s)	394, 430
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	492
BssMI	GATC	5 cut(s)	85, 102, 150, 204, 259
BssNAI	GTATAC	1 cut(s)	63
Bst1107I	GTATAC	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	67, 169
Bst6I	CTCTTC	1 cut(s)	402
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	402, 438
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	5 cut(s)	88, 105, 153, 207, 262
BstMAI	GTCTC	3 cut(s)	50, 301, 510
BstMBI	GATC	5 cut(s)	85, 102, 150, 204, 259
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 459
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstZ17I	GTATAC	1 cut(s)	63
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	14, 122
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	121, 143
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	194, 315, 475
CviJI	RGCY	9 cut(s)	14, 122, 131, 381, 422, 442, 462, 512, 571
CviKI_1	RGCY	9 cut(s)	14, 122, 131, 381, 422, 442, 462, 512, 571
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	402, 438
DpnI	GATC	5 cut(s)	87, 104, 152, 206, 261
DpnII	GATC	5 cut(s)	85, 102, 150, 204, 259
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	422
EclXI	CGGCCG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	143
Eco52I	CGGCCG	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	3 cut(s)	197, 318, 478
FatI	CATG	3 cut(s)	193, 314, 474
FauNDI	CATATG	1 cut(s)	366
FbaI	TGATCA	2 cut(s)	204, 259
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	5 cut(s)	425, 459, 485, 513, 574
GluI	GCNGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	14, 122
HapII	CCGG	2 cut(s)	11, 146
Hin1II	CATG	3 cut(s)	197, 318, 478
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	11, 146
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	2 cut(s)	63, 471
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	106, 425
Hpy8I	GTNNAC	2 cut(s)	63, 471
Hpy99I	CGWCG	4 cut(s)	20, 95, 173, 176
HpyAV	CCTTC	2 cut(s)	529, 563
HpyCH4III	ACNGT	2 cut(s)	67, 169
HpyCH4IV	ACGT	2 cut(s)	59, 90
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 459
HpyF3I	CTNAG	2 cut(s)	402, 438
HpySE526I	ACGT	2 cut(s)	59, 90
Hsp92II	CATG	3 cut(s)	197, 318, 478
Ksp22I	TGATCA	2 cut(s)	204, 259
Kzo9I	GATC	5 cut(s)	85, 102, 150, 204, 259
LpnPI	CCDG	7 cut(s)	24, 55, 96, 159, 248, 306, 428
MaeI	CTAG	5 cut(s)	425, 459, 485, 513, 574
MaeII	ACGT	2 cut(s)	59, 90
MaeIII	GTNAC	2 cut(s)	268, 433
MalI	GATC	5 cut(s)	87, 104, 152, 206, 261
MboI	GATC	5 cut(s)	85, 102, 150, 204, 259
MboII	GAAGA	2 cut(s)	121, 419
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	212, 278, 394
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	307
MseI	TTAA	2 cut(s)	24, 188
MslI	CAYNNNNRTG	3 cut(s)	198, 319, 336
MspI	CCGG	2 cut(s)	11, 146
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	128, 459
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	5 cut(s)	85, 102, 150, 204, 259
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	3 cut(s)	197, 318, 478
NmeAIII	GCCGAG	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	336
PctI	GAATGC	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	121, 143
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	3 cut(s)	198, 319, 336
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	24, 188
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	5 cut(s)	85, 102, 150, 204, 259
Sau96I	GGNCC	2 cut(s)	121, 143
SchI	GAGTC	1 cut(s)	487
SduI	GDGCHC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	3 cut(s)	198, 319, 336
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	212, 278, 394
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	5 cut(s)	425, 459, 485, 513, 574
SstI	GAGCTC	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	67, 169
TaiI	ACGT	2 cut(s)	62, 93
TaqI	TCGA	2 cut(s)	153, 556
TasI	AATT	3 cut(s)	212, 278, 394
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	24, 188
Tru9I	TTAA	2 cut(s)	24, 188
TspDTI	ATGAA	3 cut(s)	205, 299, 522
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	278, 394
XbaI	TCTAGA	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	5 cut(s)	425, 459, 485, 513, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.