Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018054.1

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Reverse (-)

13029 .. 13765

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018054.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggagcccctccgagctgagtttggtgggcccgagatagagccccacattaccgccgtaggatctgtccttttgacgcatgactacgcggtcaaacaatttataaatggttgtgaaaatatagaaccctacacttgtgaagttgatcaggtggttactcgcaaattctattaccaacctgtctctctcctctttcatccatgtccatgggttggacactttggtggttatctacatcgctctcatatgccgcacttgagccttctatatgggaatttgacagaggaagagaggaagagagctctagaaaaggttactgagctggacgacagcattgctagcctcaagttcaccataagtcaccttgttttgtacaaaacgcacaatgaagctagagatcaacattcttgggagaaggttatagaatacaacctccgacagcgcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

149

Amino Acids

17.36

Weight (kDa)

6.04

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	54, 89, 251
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	164, 274
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	4 cut(s)	17, 302, 322, 392
AluI	AGCT	4 cut(s)	17, 302, 322, 392
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	29
ApaI	GGGCCC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	164, 274
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	29, 30
AsuHPI	GGTGA	2 cut(s)	343, 353
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	4 cut(s)	9, 33, 45, 304
Bbv12I	GWGCWC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	305, 339, 393
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	29, 30
BmiI	GGNNCC	2 cut(s)	6, 31
BmtI	GCTAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	277, 329
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	9, 309
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	32
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	4 cut(s)	9, 33, 45, 304
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	62, 145, 397
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	3 cut(s)	54, 89, 251
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	10, 310
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	6, 31
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	62, 145, 397
BssT1I	CCWWGG	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	282, 290
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	18, 318
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	3 cut(s)	65, 148, 400
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	62, 145, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	29, 30
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	3 cut(s)	80, 201, 207
CviJI	RGCY	9 cut(s)	7, 17, 31, 43, 261, 302, 322, 342, 392
CviKI_1	RGCY	9 cut(s)	7, 17, 31, 43, 261, 302, 322, 342, 392
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	18, 318
DpnI	GATC	3 cut(s)	64, 147, 399
DpnII	GATC	3 cut(s)	62, 145, 397
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	282, 290
EarI	CTCTTC	2 cut(s)	282, 290
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	4 cut(s)	9, 33, 45, 304
Eco53kI	GAGCTC	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	4 cut(s)	9, 33, 45, 304
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	83, 204, 210
FatI	CATG	3 cut(s)	79, 200, 206
FauNDI	CATATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	4 cut(s)	9, 33, 45, 304
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	3 cut(s)	305, 339, 393
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	83, 204, 210
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HphI	GGTGA	2 cut(s)	343, 353
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	2 cut(s)	14, 437
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	2 cut(s)	272, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	18, 318
Hsp92II	CATG	3 cut(s)	83, 204, 210
HspAI	GCGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	62, 145, 397
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	134, 192, 308
MaeI	CTAG	3 cut(s)	305, 339, 393
MaeIII	GTNAC	3 cut(s)	154, 313, 359
MalI	GATC	3 cut(s)	64, 147, 399
MboI	GATC	3 cut(s)	62, 145, 397
MboII	GAAGA	2 cut(s)	299, 307
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	4 cut(s)	9, 33, 45, 304
MluCI	AATT	4 cut(s)	98, 164, 274, 445
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	20, 200, 277, 285, 353, 443
MslI	CAYNNNNRTG	2 cut(s)	205, 222
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	3 cut(s)	62, 145, 397
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	3 cut(s)	83, 204, 210
NlaIV	GGNNCC	2 cut(s)	6, 31
NmuCI	GTSAC	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	6, 31
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	29, 30
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	2 cut(s)	205, 222
SacI	GAGCTC	1 cut(s)	304
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	3 cut(s)	62, 145, 397
Sau96I	GGNCC	2 cut(s)	29, 30
SduI	GDGCHC	4 cut(s)	9, 33, 45, 304
SmiMI	CAYNNNNRTG	2 cut(s)	205, 222
SmlI	CTYRAG	2 cut(s)	256, 344
SmoI	CTYRAG	2 cut(s)	256, 344
Sse9I	AATT	4 cut(s)	98, 164, 274, 445
SsiI	CCGC	3 cut(s)	54, 89, 251
SspMI	CTAG	3 cut(s)	305, 339, 393
SstI	GAGCTC	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	206
TasI	AATT	4 cut(s)	98, 164, 274, 445
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	185, 402
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	164, 274
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	3 cut(s)	305, 339, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.