Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Reverse (-)

36341202 .. 36342819

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1271200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAAACCCACAAACCACATCTACTGCGGCGGAAGTAAAGAACGTCTACTCGGTGTGGGCCCTCCCGCCGGATGACGTGGCCCCCAGGCTGAAGAAGCTGATGCAGGGCCTCCGTGCCGAGTTCGGTGGTCCACAGTTCGAGCCCCACATCACTGTGGTGGGGGCTATCAGCCTGACCCTGGACGACGCCCTCGCGAAGTTCCGATCGGCTTCTGAGGGCCTCAAGGCCTACGACGCCAAGGTTGATCGCGTGGCCACCGGCACCGGCACCTTCTTTTACCAGTGTGTTTCCCTCCTTATAAATCCGACCCCTCAGGTGGTGGAAGCTAGTGCTCACTGCTCTGGCCATTTCGGTTTCAAACGCTCAACCCCTTATATGCCACATTTGAGCATCCTCTACGGTGATCTGACCGACGAAGAGAAGAAGAAGGCGCAAGAAAAAGCTAACACTCTCGACGAGAGCATTGCCGGCCTGAGCTTCCCCGTTACTCGCCTTGCGTTGTTCAAAACCGACCCCAAAGATATAACTCTCAAGTCCTGGGAGAAGATTGCTGAGTGCACCCTCGAATCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

193

Amino Acids

20.98

Weight (kDa)

6.09

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPDase	PF07823	18 - 155	1.5e-09	Cyclic phosphodiesterase-like protein
2_5_RNA_ligase2	PF13563	23 - 173	2.7e-10	2'-5' RNA ligase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AccB1I	GGYRCC	2 cut(s)	263, 269
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	197, 252
AciI	CCGC	3 cut(s)	29, 32, 68
AcoI	YGGCCR	2 cut(s)	255, 346
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	189, 237
AfiI	CCNNNNNNNGG	3 cut(s)	70, 181, 319
AgsI	TTSAA	2 cut(s)	361, 508
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	3 cut(s)	86, 180, 539
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	100, 329, 446, 480
AluI	AGCT	4 cut(s)	100, 329, 446, 480
Alw21I	GWGCWC	2 cut(s)	337, 563
Alw44I	GTGCAC	1 cut(s)	559
AoxI	GGCC	8 cut(s)	60, 81, 109, 220, 228, 255, 346, 472
ApaI	GGGCCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	6 cut(s)	60, 61, 82, 109, 131, 220
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	2 cut(s)	64, 563
BalI	TGGCCA	2 cut(s)	257, 348
BanI	GGYRCC	2 cut(s)	263, 269
BanII	GRGCYC	2 cut(s)	64, 147
Bbv12I	GWGCWC	2 cut(s)	337, 563
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	3 cut(s)	88, 182, 541
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	88, 182, 541
Bme18I	GGWCC	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	6 cut(s)	60, 61, 82, 109, 131, 220
BmiI	GGNNCC	4 cut(s)	62, 84, 265, 271
BmrFI	CCNGG	3 cut(s)	88, 182, 541
BmsI	GCATC	2 cut(s)	93, 402
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	209, 518
BsaHI	GRCGYC	2 cut(s)	189, 237
BsaJI	CCNNGG	4 cut(s)	86, 180, 240, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 181, 319
Bse118I	RCCGGY	3 cut(s)	260, 266, 470
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	88, 182, 541
BseDI	CCNNGG	4 cut(s)	86, 180, 240, 540
BseGI	GGATG	2 cut(s)	79, 393
BseLI	CCNNNNNNNGG	3 cut(s)	70, 181, 319
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	4 cut(s)	207, 329, 467, 546
BseNI	ACTGG	1 cut(s)	283
BseSI	GKGCMC	2 cut(s)	64, 563
Bsh1236I	CGCG	2 cut(s)	197, 252
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	8 cut(s)	62, 83, 111, 222, 230, 257, 348, 474
BshNI	GGYRCC	2 cut(s)	263, 269
BsiEI	CGRYCG	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	337, 563
BsiSI	CCGG	4 cut(s)	71, 261, 267, 471
BslI	CCNNNNNNNGG	3 cut(s)	70, 181, 319
BsnI	GGCC	8 cut(s)	62, 83, 111, 222, 230, 257, 348, 474
Bsp120I	GGGCCC	1 cut(s)	60
Bsp1286I	GDGCHC	4 cut(s)	64, 147, 337, 563
Bsp143I	GATC	3 cut(s)	206, 247, 406
Bsp68I	TCGCGA	1 cut(s)	197
BspACI	CCGC	3 cut(s)	29, 32, 68
BspANI	GGCC	8 cut(s)	62, 83, 111, 222, 230, 257, 348, 474
BspCNI	CTCAG	4 cut(s)	208, 328, 468, 547
BspFNI	CGCG	2 cut(s)	197, 252
BspLI	GGNNCC	4 cut(s)	62, 84, 265, 271
BspT107I	GGYRCC	2 cut(s)	263, 269
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	3 cut(s)	260, 266, 470
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	3 cut(s)	260, 266, 470
BssECI	CCNNGG	4 cut(s)	86, 180, 240, 540
BssMI	GATC	3 cut(s)	206, 247, 406
BssNI	GRCGYC	2 cut(s)	189, 237
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	3 cut(s)	88, 182, 541
Bst4CI	ACNGT	3 cut(s)	138, 157, 404
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	2 cut(s)	189, 237
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	4 cut(s)	216, 315, 476, 555
BstF5I	GGATG	2 cut(s)	79, 393
BstFNI	CGCG	2 cut(s)	197, 252
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	3 cut(s)	209, 250, 409
BstMBI	GATC	3 cut(s)	206, 247, 406
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 236, 471
BstNI	CCWGG	3 cut(s)	88, 182, 541
BstSCI	CCNGG	3 cut(s)	86, 180, 539
BstSLI	GKGCMC	2 cut(s)	64, 563
BstUI	CGCG	2 cut(s)	197, 252
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	8 cut(s)	62, 83, 111, 222, 230, 257, 348, 474
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	79, 393
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	3 cut(s)	153, 290, 337
BtuMI	TCGCGA	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	3 cut(s)	260, 266, 470
Cfr13I	GGNCC	6 cut(s)	60, 61, 82, 109, 131, 220
CseI	GACGC	2 cut(s)	197, 245
DdeI	CTNAG	4 cut(s)	216, 315, 476, 555
DpnI	GATC	3 cut(s)	208, 249, 408
DpnII	GATC	3 cut(s)	206, 247, 406
EaeI	YGGCCR	2 cut(s)	255, 346
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	2 cut(s)	64, 147
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	3 cut(s)	61, 109, 220
EcoRII	CCWGG	3 cut(s)	86, 180, 539
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	64, 147
ErhI	CCWWGG	1 cut(s)	240
FaiI	YATR	4 cut(s)	302, 378, 380, 527
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	86, 380
FriOI	GRGCYC	2 cut(s)	64, 147
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	8 cut(s)	62, 83, 111, 222, 230, 257, 348, 474
HapII	CCGG	4 cut(s)	71, 261, 267, 471
HgaI	GACGC	2 cut(s)	197, 245
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	2 cut(s)	189, 237
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	4 cut(s)	71, 261, 267, 471
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	49, 134, 561
Hpy188I	TCNGA	4 cut(s)	206, 217, 309, 411
Hpy188III	TCNNGA	2 cut(s)	196, 455
Hpy8I	GTNNAC	3 cut(s)	49, 134, 561
Hpy99I	CGWCG	4 cut(s)	191, 239, 419, 461
HpyAV	CCTTC	2 cut(s)	283, 424
HpyCH4III	ACNGT	3 cut(s)	138, 157, 404
HpyCH4IV	ACGT	2 cut(s)	45, 78
HpyCH4V	TGCA	2 cut(s)	106, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 236, 471
HpyF3I	CTNAG	4 cut(s)	216, 315, 476, 555
HpySE526I	ACGT	2 cut(s)	45, 78
Hsp92I	GRCGYC	2 cut(s)	189, 237
HspAI	GCGC	1 cut(s)	434
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	206, 247, 406
LweI	GCATC	2 cut(s)	93, 402
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	45, 78
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	3 cut(s)	208, 249, 408
MboI	GATC	3 cut(s)	206, 247, 406
MboII	GAAGA	5 cut(s)	106, 431, 436, 439, 559
MhlI	GDGCHC	4 cut(s)	64, 147, 337, 563
MlsI	TGGCCA	2 cut(s)	257, 348
MluCI	AATT	1 cut(s)	574
MluNI	TGGCCA	2 cut(s)	257, 348
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	9 cut(s)	74, 122, 203, 211, 233, 305, 324, 407, 575
Mox20I	TGGCCA	2 cut(s)	257, 348
MroNI	GCCGGC	1 cut(s)	470
MscI	TGGCCA	2 cut(s)	257, 348
MslI	CAYNNNNRTG	2 cut(s)	155, 158
Msp20I	TGGCCA	2 cut(s)	257, 348
MspI	CCGG	4 cut(s)	71, 261, 267, 471
MspR9I	CCNGG	3 cut(s)	88, 182, 541
MvaI	CCWGG	3 cut(s)	88, 182, 541
MvnI	CGCG	2 cut(s)	197, 252
MwoI	GCNNNNNNNGC	3 cut(s)	97, 236, 471
NaeI	GCCGGC	1 cut(s)	472
NdeII	GATC	3 cut(s)	206, 247, 406
NgoMIV	GCCGGC	1 cut(s)	470
NlaIV	GGNNCC	4 cut(s)	62, 84, 265, 271
NmeAIII	GCCGAG	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	31
Ple19I	CGATCG	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	86, 180, 539
PspGI	CCWGG	3 cut(s)	86, 180, 539
PspN4I	GGNNCC	4 cut(s)	62, 84, 265, 271
PspOMI	GGGCCC	1 cut(s)	60
PspPI	GGNCC	6 cut(s)	60, 61, 82, 109, 131, 220
PvuI	CGATCG	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	197
RseI	CAYNNNNRTG	2 cut(s)	155, 158
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	206, 247, 406
Sau96I	GGNCC	6 cut(s)	60, 61, 82, 109, 131, 220
ScrFI	CCNGG	3 cut(s)	88, 182, 541
SduI	GDGCHC	4 cut(s)	64, 147, 337, 563
SetI	ASST	9 cut(s)	48, 81, 102, 246, 275, 321, 331, 448, 482
SfaNI	GCATC	2 cut(s)	93, 402
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	155, 158
SmlI	CTYRAG	2 cut(s)	224, 533
SmoI	CTYRAG	2 cut(s)	224, 533
Sse9I	AATT	1 cut(s)	574
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	3 cut(s)	29, 32, 68
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	86, 180, 539
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	138, 157, 404
TaiI	ACGT	2 cut(s)	48, 81
TaqI	TCGA	4 cut(s)	141, 456, 567, 572
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	574
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	569
TscAI	CASTG	3 cut(s)	160, 290, 344
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	160, 290, 344
VneI	GTGCAC	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.