Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Reverse (-)

3890586 .. 3892632

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAAATAAGAACTGAACTCCTTCCGATCCTCACAGTTTTCGGACTCTTTTCCTTTTCCCTCTTCATCTTACTCCAATCCTTCTCGTCTCTCATGGCCTCCACCACCCCAGAAAAGCACGTCTACTCCGTCTGGGCGCTTCCACCGGAGGACGTGGCCCCCAGGCTGCAGAAACTCATGGAGGGCCTCCGCGCCGAGTTTACCGGGCCCTACTTCGACCCCCACATCACCGTCGTGGGGGCCATCACTTTGACCCCCGAAGACGCCCTCAACAAGTTTGAAACGGCCTCGAAGGCCGTGAAGGCTTACGAGGCCAAAGTTGAGAGGGTCGCAACTGGAACTTTCTTTTACCAGTGTGTGTTCCTCCTCATCAATCCCACTCCTCAGGTGGTGGAAGCTAGTACAAGCTGCTGTGGGCATTTTGGTTACAATAACTCAACTCCTTATATGCCACATTTGAGCATCCTTTACGCAGATCTGAGTGATGAAGACAAGAAAAAAGCTCAAGAGAAAGCCAACATTCTGGATGAGAGCATCACTAGTCTGAGCTTCGCTGTTACTCGCCTTGCATTGTACAAAACCGACACTGAAGATAAAACTCTCAAATCTTGGGAGAAGATTGCTGAGTGCACCCTCCAACCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

216

Amino Acids

24.05

Weight (kDa)

5.43

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPDase	PF07823	43 - 204	9.2e-10	Cyclic phosphodiesterase-like protein
2_5_RNA_ligase2	PF13563	49 - 196	2e-10	2'-5' RNA ligase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	403, 575
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	281
AhlI	ACTAGT	1 cut(s)	539
AjiI	CACGTC	2 cut(s)	121, 154
AjnI	CCWGG	1 cut(s)	161
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	398, 408, 503, 549
AluI	AGCT	4 cut(s)	398, 408, 503, 549
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	1 cut(s)	93
Alw44I	GTGCAC	1 cut(s)	628
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	8 cut(s)	96, 156, 184, 206, 240, 285, 294, 312
ApaI	GGGCCC	1 cut(s)	210
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	2 cut(s)	166, 408
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	2 cut(s)	139, 194
AspS9I	GGNCC	5 cut(s)	157, 184, 206, 207, 240
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	384
BaeGI	GKGCMC	2 cut(s)	210, 632
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	267, 495
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	153, 395
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	2 cut(s)	281, 300
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	93
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	2 cut(s)	399, 540
BfmI	CTRYAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	140
BglI	GCCNNNNNGGC	2 cut(s)	293, 302
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	2 cut(s)	167, 409
BlsI	GCNGC	2 cut(s)	168, 410
Bme1390I	CCNGG	2 cut(s)	163, 205
BmgBI	CACGTC	2 cut(s)	121, 154
BmgT120I	GGNCC	5 cut(s)	157, 184, 206, 207, 240
BmiI	GGNNCC	3 cut(s)	159, 208, 241
BmrFI	CCNGG	2 cut(s)	163, 205
BmsI	GCATC	2 cut(s)	471, 543
BpiI	GAAGAC	2 cut(s)	267, 495
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	340, 352
Bse21I	CCTNAGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	462, 532
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	398, 470, 536, 615
BseNI	ACTGG	2 cut(s)	340, 352
BseRI	GAGGAG	2 cut(s)	356, 372
BseSI	GKGCMC	2 cut(s)	210, 632
BseXI	GCAGC	2 cut(s)	153, 395
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	8 cut(s)	98, 158, 186, 208, 242, 287, 296, 314
BsiHKAI	GWGCWC	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	146, 204
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	8 cut(s)	98, 158, 186, 208, 242, 287, 296, 314
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	210, 632
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	27, 475
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	8 cut(s)	98, 158, 186, 208, 242, 287, 296, 314
BspCNI	CTCAG	4 cut(s)	397, 471, 537, 616
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	159, 208, 241
BspMAI	CTGCAG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	340, 352
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	27, 475
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	37, 232
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	573
BstDEI	CTNAG	4 cut(s)	384, 479, 545, 624
BstF5I	GGATG	2 cut(s)	462, 532
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	139, 194
BstKTI	GATC	2 cut(s)	30, 478
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	27, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 302, 311
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	161, 203
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	2 cut(s)	210, 632
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	153, 395
BstV2I	GAAGAC	2 cut(s)	267, 495
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	475
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	8 cut(s)	98, 158, 186, 208, 242, 287, 296, 314
BtrI	CACGTC	2 cut(s)	121, 154
BtsCI	GGATG	2 cut(s)	462, 532
BtsIMutI	CAGTG	2 cut(s)	359, 585
CfoI	GCGC	2 cut(s)	139, 194
Cfr13I	GGNCC	5 cut(s)	157, 184, 206, 207, 240
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	402, 574
CviAII	CATG	2 cut(s)	94, 178
CviQI	GTAC	2 cut(s)	402, 574
DdeI	CTNAG	4 cut(s)	384, 479, 545, 624
DpnI	GATC	2 cut(s)	29, 477
DpnII	GATC	2 cut(s)	27, 475
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	384
EcoO109I	RGGNCCY	2 cut(s)	184, 207
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	97, 181
FaiI	YATR	4 cut(s)	95, 179, 447, 449
FatI	CATG	2 cut(s)	93, 177
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	167, 409
FokI	GGATG	2 cut(s)	449, 539
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	167, 409
FspBI	CTAG	2 cut(s)	399, 540
GlaI	GCGC	2 cut(s)	138, 193
GluI	GCNGC	2 cut(s)	167, 409
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	8 cut(s)	98, 158, 186, 208, 242, 287, 296, 314
HapII	CCGG	2 cut(s)	146, 204
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	2 cut(s)	139, 194
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	97, 181
Hin6I	GCGC	2 cut(s)	137, 192
HinP1I	GCGC	2 cut(s)	137, 192
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	146, 204
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	3 cut(s)	124, 201, 630
Hpy188I	TCNGA	4 cut(s)	27, 44, 480, 546
Hpy188III	TCNNGA	2 cut(s)	506, 524
Hpy8I	GTNNAC	3 cut(s)	124, 201, 630
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	32, 91, 286, 295
HpyCH4III	ACNGT	2 cut(s)	37, 232
HpyCH4IV	ACGT	2 cut(s)	120, 153
HpyCH4V	TGCA	3 cut(s)	169, 569, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 302, 311
HpyF3I	CTNAG	4 cut(s)	384, 479, 545, 624
HpySE526I	ACGT	2 cut(s)	120, 153
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	97, 181
HspAI	GCGC	2 cut(s)	137, 192
Kzo9I	GATC	2 cut(s)	27, 475
Lsp1109I	GCAGC	2 cut(s)	153, 395
LweI	GCATC	2 cut(s)	471, 543
MaeI	CTAG	2 cut(s)	399, 540
MaeII	ACGT	2 cut(s)	120, 153
MaeIII	GTNAC	2 cut(s)	425, 556
MalI	GATC	2 cut(s)	29, 477
MboI	GATC	2 cut(s)	27, 475
MboII	GAAGA	5 cut(s)	55, 272, 500, 602, 628
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	210, 632
MluCI	AATT	1 cut(s)	643
MlyI	GAGTC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	2 cut(s)	146, 204
MspR9I	CCNGG	2 cut(s)	163, 205
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	293, 302, 311
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	2 cut(s)	27, 475
NlaIII	CATG	2 cut(s)	97, 181
NlaIV	GGNNCC	3 cut(s)	159, 208, 241
NmeAIII	GCCGAG	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	168, 410
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	159, 208, 241
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	5 cut(s)	157, 184, 206, 207, 240
PstI	CTGCAG	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	2 cut(s)	403, 575
RsaNI	GTAC	2 cut(s)	402, 574
RseI	CAYNNNNRTG	1 cut(s)	233
SatI	GCNGC	2 cut(s)	167, 409
Sau3AI	GATC	2 cut(s)	27, 475
Sau96I	GGNCC	5 cut(s)	157, 184, 206, 207, 240
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	163, 205
SduI	GDGCHC	2 cut(s)	210, 632
SetI	ASST	7 cut(s)	123, 156, 390, 400, 410, 505, 551
SfaNI	GCATC	2 cut(s)	471, 543
SfcI	CTRYAG	1 cut(s)	167
SfiI	GGCCNNNNNGGCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	1 cut(s)	643
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	2 cut(s)	399, 540
StyD4I	CCNGG	2 cut(s)	161, 203
TaaI	ACNGT	2 cut(s)	37, 232
TaiI	ACGT	2 cut(s)	123, 156
TaqI	TCGA	2 cut(s)	216, 290
TasI	AATT	1 cut(s)	643
TatI	WGTACW	2 cut(s)	401, 573
TscAI	CASTG	2 cut(s)	359, 592
TseI	GCWGC	2 cut(s)	166, 408
TspDTI	ATGAA	3 cut(s)	17, 55, 501
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	359, 592
VneI	GTGCAC	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	2 cut(s)	399, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.