Prupe.4G070300_v2.0.a1

Cyclic phosphodiesterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0005055
Physical Location & Seq
Forward (+)
3440169 .. 3441505
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G070300.1

Sequence Viewer

Length: 576 bp
ATGGCGAAGCCAGCAGAACCAAAATCTACTGCTCCGGCGGAGAACAACGTGTATTCAGTGTGGGCCCTCCCCCCGGATGACGTGGCGCCCAGGCTGAAGAAGCTGATGCAGGGCCTCCGGGACGAGTTCAGTGGGCCCGAGTTCGAGCCCCACATCACCGTTGTGGGGGCCATCAGCCTGACCCCTGAGGACGCCCTCAACAAGTTCAAATCGGCTTCTCGGGGCCTCAAAGCCTACGATGCCAAAGTTGATCGTGTGGCTACCGGCACTTTCTTTTACCAGTGTGTTTTTCTCCTCATAAATCCAACCCCTCAGGTGGTGGAAACTAGTGCACACTGCTGTGCGCATTTCGGTTTCAATAGCGCCACTCCTTATTTTCCACACTTGAGCCTCCTTTACGCGGACCTGACAGAAGAAGAGAAGAAGAAAGCTCAAGAAAAAGCCAACATTCTTGATGAGAGCATTGGCAGCCTGAGCTTCCCGGTAACTCGCCTTGCATTGTACAAAACCGACACCGGAGATAGAACTCTCAAATCATGGGAGAAGATTGCTGAGTGCACCCTTGAAGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPDase

Protein Analysis

192

Amino Acids

21.1

Weight (kDa)

5.61

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 85
AccII CGCG 1 cut(s) 401
AciI CCGC 2 cut(s) 38, 401
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 86, 192
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 4 cut(s) 73, 165, 316, 400
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 3 cut(s) 208, 358, 566
AhlI ACTAGT 1 cut(s) 326
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 2 cut(s) 161, 339
AluBI AGCT 3 cut(s) 103, 431, 477
AluI AGCT 3 cut(s) 103, 431, 477
Alw21I GWGCWC 2 cut(s) 334, 560
Alw44I GTGCAC 2 cut(s) 330, 556
Ama87I CYCGRG 2 cut(s) 137, 219
AoxI GGCC 5 cut(s) 63, 112, 134, 168, 223
ApaI GGGCCC 2 cut(s) 67, 138
ApaLI GTGCAC 2 cut(s) 330, 556
ApeKI GCWGC 1 cut(s) 468
AspLEI GCGC 3 cut(s) 88, 346, 365
AspS9I GGNCC 8 cut(s) 63, 64, 112, 134, 135, 168, 223, 403
AsuC2I CCSGG 3 cut(s) 74, 119, 482
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 2 cut(s) 137, 219
AvaII GGWCC 1 cut(s) 403
AxyI CCTNAGG 2 cut(s) 186, 312
BaeGI GKGCMC 4 cut(s) 67, 138, 334, 560
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 3 cut(s) 67, 138, 150
Bbv12I GWGCWC 2 cut(s) 334, 560
BbvI GCAGC 1 cut(s) 480
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 3 cut(s) 74, 119, 482
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 2 cut(s) 327, 574
BfoI RGCGCY 2 cut(s) 89, 366
BisI GCNGC 1 cut(s) 469
BlsI GCNGC 1 cut(s) 470
Bme1390I CCNGG 4 cut(s) 74, 91, 119, 482
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 2 cut(s) 137, 219
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 8 cut(s) 63, 64, 112, 134, 135, 168, 223, 403
BmiI GGNNCC 5 cut(s) 65, 87, 136, 169, 224
BmrFI CCNGG 4 cut(s) 74, 91, 119, 482
BmsI GCATC 2 cut(s) 96, 229
Bpu10I CCTNAGC 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 406, 417
BpuMI CCSGG 3 cut(s) 74, 119, 482
BsaHI GRCGYC 2 cut(s) 86, 192
BsaJI CCNNGG 2 cut(s) 72, 89
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 165, 316, 400
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 280
Bse21I CCTNAGG 2 cut(s) 186, 312
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 72, 89
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 4 cut(s) 73, 165, 316, 400
BseMII CTCAG 4 cut(s) 177, 326, 464, 543
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 4 cut(s) 67, 138, 334, 560
BseXI GCAGC 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 5 cut(s) 65, 114, 136, 170, 225
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 334, 560
BsiHKCI CYCGRG 2 cut(s) 137, 219
BsiSI CCGG 6 cut(s) 35, 74, 118, 264, 482, 516
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 4 cut(s) 73, 165, 316, 400
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 5 cut(s) 65, 114, 136, 170, 225
BsoBI CYCGRG 2 cut(s) 137, 219
Bsp120I GGGCCC 2 cut(s) 63, 134
Bsp1286I GDGCHC 5 cut(s) 67, 138, 150, 334, 560
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 2 cut(s) 38, 401
BspANI GGCC 5 cut(s) 65, 114, 136, 170, 225
BspCNI CTCAG 4 cut(s) 178, 325, 465, 544
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 5 cut(s) 65, 87, 136, 169, 224
BspT107I GGYRCC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 72, 89
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 2 cut(s) 86, 192
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 2 cut(s) 86, 192
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 4 cut(s) 186, 312, 473, 552
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 401
BstH2I RGCGCY 2 cut(s) 89, 366
BstHHI GCGC 3 cut(s) 88, 346, 365
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 5 cut(s) 11, 100, 239, 468, 474
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 4 cut(s) 72, 89, 117, 480
BstSLI GKGCMC 4 cut(s) 67, 138, 334, 560
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 480
Bsu36I CCTNAGG 2 cut(s) 186, 312
BsuRI GGCC 5 cut(s) 65, 114, 136, 170, 225
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 4 cut(s) 63, 136, 287, 334
Cac8I GCNNGC 1 cut(s) 12
CfoI GCGC 3 cut(s) 88, 346, 365
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 8 cut(s) 63, 64, 112, 134, 135, 168, 223, 403
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 502
CviAII CATG 1 cut(s) 537
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 4 cut(s) 186, 312, 473, 552
DinI GGCGCC 1 cut(s) 87
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 53
Eco24I GRGCYC 3 cut(s) 67, 138, 150
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 116
Eco81I CCTNAGG 2 cut(s) 186, 312
Eco88I CYCGRG 2 cut(s) 137, 219
EcoO109I RGGNCCY 3 cut(s) 64, 112, 223
EcoRII CCWGG 1 cut(s) 89
EcoT38I GRGCYC 3 cut(s) 67, 138, 150
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
FaeI CATG 1 cut(s) 540
FaiI YATR 2 cut(s) 299, 538
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 469
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 3 cut(s) 67, 138, 150
Fsp4HI GCNGC 1 cut(s) 469
FspAI RTGCGCAY 1 cut(s) 345
FspBI CTAG 2 cut(s) 327, 574
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 3 cut(s) 87, 345, 364
GluI GCNGC 1 cut(s) 469
HaeII RGCGCY 2 cut(s) 89, 366
HaeIII GGCC 5 cut(s) 65, 114, 136, 170, 225
HapII CCGG 6 cut(s) 35, 74, 118, 264, 482, 516
HgaI GACGC 1 cut(s) 200
HhaI GCGC 3 cut(s) 88, 346, 365
Hin1I GRCGYC 2 cut(s) 86, 192
Hin1II CATG 1 cut(s) 540
Hin6I GCGC 3 cut(s) 86, 344, 363
HinP1I GCGC 3 cut(s) 86, 344, 363
HpaII CCGG 6 cut(s) 35, 74, 118, 264, 482, 516
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 332, 558
Hpy188III TCNNGA 2 cut(s) 434, 452
Hpy8I GTNNAC 2 cut(s) 332, 558
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 2 cut(s) 48, 81
HpyCH4V TGCA 4 cut(s) 109, 332, 497, 558
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 100, 239, 468, 474
HpyF3I CTNAG 4 cut(s) 186, 312, 473, 552
HpySE526I ACGT 2 cut(s) 48, 81
Hsp92I GRCGYC 2 cut(s) 86, 192
Hsp92II CATG 1 cut(s) 540
HspAI GCGC 3 cut(s) 86, 344, 363
KasI GGCGCC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 480
LweI GCATC 2 cut(s) 96, 229
MaeI CTAG 2 cut(s) 327, 574
MaeII ACGT 2 cut(s) 48, 81
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 6 cut(s) 109, 425, 428, 433, 436, 556
MhlI GDGCHC 5 cut(s) 67, 138, 150, 334, 560
Mly113I GGCGCC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 8 cut(s) 77, 125, 181, 206, 236, 305, 321, 401
MslI CAYNNNNRTG 2 cut(s) 161, 339
MspI CCGG 6 cut(s) 35, 74, 118, 264, 482, 516
MspR9I CCNGG 4 cut(s) 74, 91, 119, 482
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 11, 100, 239, 468, 474
NarI GGCGCC 1 cut(s) 86
NciI CCSGG 3 cut(s) 74, 119, 482
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 540
NlaIV GGNNCC 5 cut(s) 65, 87, 136, 169, 224
NsbI TGCGCA 1 cut(s) 345
OliI CACNNNNGTG 2 cut(s) 161, 339
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 1 cut(s) 470
PluTI GGCGCC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 5 cut(s) 65, 87, 136, 169, 224
PspOMI GGGCCC 2 cut(s) 63, 134
PspPI GGNCC 8 cut(s) 63, 64, 112, 134, 135, 168, 223, 403
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 2 cut(s) 161, 339
SatI GCNGC 1 cut(s) 469
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 8 cut(s) 63, 64, 112, 134, 135, 168, 223, 403
ScrFI CCNGG 4 cut(s) 74, 91, 119, 482
SduI GDGCHC 5 cut(s) 67, 138, 150, 334, 560
SetI ASST 7 cut(s) 51, 84, 105, 318, 408, 433, 479
SfaNI GCATC 2 cut(s) 96, 229
SfoI GGCGCC 1 cut(s) 87
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 2 cut(s) 161, 339
SmlI CTYRAG 2 cut(s) 385, 432
SmoI CTYRAG 2 cut(s) 385, 432
SpeI ACTAGT 1 cut(s) 326
SsiI CCGC 2 cut(s) 38, 401
SspDI GGCGCC 1 cut(s) 85
SspMI CTAG 2 cut(s) 327, 574
StyD4I CCNGG 4 cut(s) 72, 89, 117, 480
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 2 cut(s) 51, 84
TaqI TCGA 1 cut(s) 144
TatI WGTACW 1 cut(s) 501
TscAI CASTG 4 cut(s) 63, 136, 287, 341
TseI GCWGC 1 cut(s) 468
TspRI CASTG 4 cut(s) 63, 136, 287, 341
VneI GTGCAC 2 cut(s) 330, 556
VpaK11BI GGWCC 1 cut(s) 403
XspI CTAG 2 cut(s) 327, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.