Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Reverse (-)

28281722 .. 28282692

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G318900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCGTGTCCCCGTTGAAAACCAAGATGTGCAGGAAAAAATGCACAGGTACGCGGTCTGGGCCATACCACCCAATGACGTGGTCCGCAGGATCAAGAAAGTGACGGAGGGCCTCCGGGCTGAGTTTGGTGGGCCCCAGATCGAGCCCCACATCACCATTGTGGGGTCCATCCTTTTGAGTCATGAAAGAGCAGTCGAAGGCTTCACAGAGGCTTGTGAAAGTTTCCAGCAGCACAGTTTTAAAGTTGGTCATGTGGCTACTCGTAAATTCTTTTACCAGTGTGTTTCGCTCTTCATCCATCCATCTCTTTATGCGAACCTGACAGAGGAAGAAAGGATAAAAGCTCAAGAAAAAGTTACCATTTTAAATCGTTTTGAATTGTACAAAACCAAAAACGAAGATAGAGATCAACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

140

Amino Acids

16.19

Weight (kDa)

7.02

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	53, 85
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	2 cut(s)	50, 383
AfiI	CCNNNNNNNGG	2 cut(s)	162, 325
AgsI	TTSAA	2 cut(s)	17, 377
AjiI	CACGTC	1 cut(s)	79
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	3 cut(s)	60, 109, 131
ApaI	GGGCCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	6 cut(s)	60, 82, 109, 131, 132, 165
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	82, 165
BaeGI	GKGCMC	1 cut(s)	135
BanII	GRGCYC	2 cut(s)	135, 147
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	176, 306, 310
BcnI	CCSGG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	82, 165
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	6 cut(s)	60, 82, 109, 131, 132, 165
BmiI	GGNNCC	3 cut(s)	133, 134, 166
BmrFI	CCNGG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 325
Bse1I	ACTGG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	405
BseGI	GGATG	3 cut(s)	168, 294, 298
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	162, 325
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	62, 111, 133
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	162, 325
BsnI	GGCC	3 cut(s)	62, 111, 133
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	135, 147
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	90, 138, 406
BspACI	CCGC	2 cut(s)	53, 85
BspANI	GGCC	3 cut(s)	62, 111, 133
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	133, 134, 166
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	90, 138, 406
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	120
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	168, 294, 298
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	93, 141, 409
BstMBI	GATC	3 cut(s)	90, 138, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	62, 111, 133
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	168, 294, 298
BtsIMutI	CAGTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	6 cut(s)	60, 82, 109, 131, 132, 165
Csp6I	GTAC	2 cut(s)	49, 382
CviAII	CATG	2 cut(s)	182, 251
CviJI	RGCY	9 cut(s)	62, 111, 119, 133, 145, 201, 212, 257, 344
CviKI_1	RGCY	9 cut(s)	62, 111, 119, 133, 145, 201, 212, 257, 344
CviQI	GTAC	2 cut(s)	49, 382
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	3 cut(s)	92, 140, 408
DpnII	GATC	3 cut(s)	90, 138, 406
DraI	TTTAAA	2 cut(s)	241, 366
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco24I	GRGCYC	2 cut(s)	135, 147
Eco47I	GGWCC	2 cut(s)	82, 165
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	109, 132
EcoT38I	GRGCYC	2 cut(s)	135, 147
FaeI	CATG	2 cut(s)	185, 254
FaiI	YATR	4 cut(s)	65, 183, 252, 312
FatI	CATG	2 cut(s)	181, 250
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	3 cut(s)	155, 281, 285
FriOI	GRGCYC	2 cut(s)	135, 147
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	62, 111, 133
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	2 cut(s)	185, 254
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	94, 182, 347, 417
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	31, 43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	185, 254
Kzo9I	GATC	3 cut(s)	90, 138, 406
LguI	GCTCTTC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	17, 31, 43, 73, 128, 149, 239, 290, 332
Lsp1109I	GCAGC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	100, 355
MalI	GATC	3 cut(s)	92, 140, 408
MboI	GATC	3 cut(s)	90, 138, 406
MboII	GAAGA	3 cut(s)	283, 341, 410
MhlI	GDGCHC	2 cut(s)	135, 147
MluCI	AATT	2 cut(s)	266, 377
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	100, 122, 202, 319
MseI	TTAA	2 cut(s)	240, 365
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	90, 138, 406
NlaIII	CATG	2 cut(s)	185, 254
NlaIV	GGNNCC	3 cut(s)	133, 134, 166
NmuCI	GTSAC	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	158
PagI	TCATGA	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	133, 134, 166
PspOMI	GGGCCC	1 cut(s)	131
PspPI	GGNCC	6 cut(s)	60, 82, 109, 131, 132, 165
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	2 cut(s)	50, 383
RsaNI	GTAC	2 cut(s)	49, 382
RseI	CAYNNNNRTG	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	240, 365
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	90, 138, 406
Sau96I	GGNCC	6 cut(s)	60, 82, 109, 131, 132, 165
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	135, 147
SetI	ASST	4 cut(s)	50, 81, 321, 346
SinI	GGWCC	2 cut(s)	82, 165
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	266, 377
SsiI	CCGC	2 cut(s)	53, 85
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	141, 195
TasI	AATT	2 cut(s)	266, 377
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	240, 365
Tru9I	TTAA	2 cut(s)	240, 365
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	198, 283
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	284
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	82, 165
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.