Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

87055 .. 90525

Gene Structure 3471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTTTCCGAGACTGATGCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCGATGGAATTGAAGATATGCAAGGTCACAATCACCGAGCAGACCCTTGCCTCGTCTTGACTTCCGATCCCAAACCCCGTCTCCGCTGGACTGCTGACCTTCACGAACGATTTGTCGACGCAGTCACTCAACTTGGTGGCGCCGCTAAAGCTACGCCCAAGGCCATTATGCGAACAATGAATGTCAAGGGGCTGACACTTTTTCATTTAAAAAGTCATCTACAGAAATACAGGCTAGGTAAGCAAGCAGGAAAGGATATGGATGAGGTATCCAAGGATGCTTCATACCTTCTAGAAAGCCCTGGTACTGGTAATTCTTCGCCAAATTTGCCTACTTCTGATATGAATGAGGGTTATGAAGTCAAAGAGGCATTACGAGTGCAAATGGAAGTACAAAGTAAACTACATGTGCAAGTTGAGGCTGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGAAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGCTTGCCGATCAATTTATTGGAGGTTCAGTCATTGATACTGATGGCCATAAATGTCATGGCTTGGGGAATAAGAATCCAAAAAGTTCCTCCCTCGACCCACTTGGCTTCTACTCATTACAATCCACAGATGTGGCTGGAGTTCATGGTCCGGAAGAAGAAGTGCTAACTAGTGTCCATCCCCAAAGGGCTGATTGCTCCACTGAAAGCTGCCTCACATCACATGAGAGTCCTGGAGGACTAACTTTGGAAGGATCTCCAGGTGATGGGAAAAAAAGAATGTTGAGCTTGGAGTCGGCAACTGCATCTCTAATTTGGGGTGAAGCCAAGGTGAGAACCCAAGAGATTAATCTAGCCCCAGTTGAGCCTCATGGAATTACTAGGTATGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 Pkinase_Tyr

Protein Analysis

313

Amino Acids

34.26

Weight (kDa)

6.23

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	45 - 96	1.7e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	138 - 183	3.5e-16	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	697
AciI	CCGC	3 cut(s)	53, 139, 198
AclWI	GGATC	2 cut(s)	116, 808
AcoI	YGGCCR	2 cut(s)	522, 592
AcsI	RAATTY	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	361, 447
AfiI	CCNNNNNNNGG	3 cut(s)	59, 362, 812
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	716
AjnI	CCWGG	4 cut(s)	355, 498, 778, 805
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	4 cut(s)	206, 539, 756, 834
AluI	AGCT	4 cut(s)	206, 539, 756, 834
Alw26I	GTCTC	2 cut(s)	4, 140
AlwI	GGATC	2 cut(s)	116, 808
Aor13HI	TCCGGA	1 cut(s)	697
AoxI	GGCC	3 cut(s)	216, 522, 592
ApeKI	GCWGC	2 cut(s)	19, 756
ApoI	RAATTY	1 cut(s)	379
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AseI	ATTAAT	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	4 cut(s)	80, 821, 878, 889
AvaII	GGWCC	1 cut(s)	695
BalI	TGGCCA	2 cut(s)	524, 594
BanI	GGYRCC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	31, 743
BccI	CCATC	4 cut(s)	53, 584, 732, 806
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	357, 500, 780, 807
BciVI	GTATCC	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	4, 140
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	5 cut(s)	290, 347, 717, 899, 927
BfmI	CTRYAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	20, 198, 757
BlsI	GCNGC	3 cut(s)	21, 199, 758
Bme1390I	CCNGG	4 cut(s)	357, 500, 780, 807
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	4 cut(s)	357, 500, 780, 807
BmrI	ACTGGG	1 cut(s)	899
BmsI	GCATC	5 cut(s)	6, 322, 493, 537, 860
BmuI	ACTGGG	1 cut(s)	899
BpmI	CTGGAG	3 cut(s)	705, 789, 801
BpuEI	CTTGAG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	213, 327, 355, 873
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 561, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 362, 812
Bse1I	ACTGG	2 cut(s)	367, 905
BseAI	TCCGGA	1 cut(s)	697
BseBI	CCWGG	4 cut(s)	357, 500, 780, 807
BseDI	CCNNGG	4 cut(s)	213, 327, 355, 873
BseGI	GGATG	4 cut(s)	322, 337, 508, 724
BseLI	CCNNNNNNNGG	3 cut(s)	59, 362, 812
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	367, 905
BseRI	GAGGAG	9 cut(s)	15, 18, 21, 24, 27, 30, 33, 36, 39
BseXI	GCAGC	2 cut(s)	31, 743
BshFI	GGCC	3 cut(s)	218, 524, 594
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	698
BslI	CCNNNNNNNGG	3 cut(s)	59, 362, 812
BsmAI	GTCTC	2 cut(s)	4, 140
BsmBI	CGTCTC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	218, 524, 594
Bsp13I	TCCGGA	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	121, 556, 800
BspACI	CCGC	3 cut(s)	53, 139, 198
BspANI	GGCC	3 cut(s)	218, 524, 594
BspCNI	CTCAG	1 cut(s)	469
BspEI	TCCGGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	116, 808
BspT107I	GGYRCC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	367, 905
BssECI	CCNNGG	4 cut(s)	213, 327, 355, 873
BssMI	GATC	3 cut(s)	121, 556, 800
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	3 cut(s)	213, 327, 873
Bst2UI	CCWGG	4 cut(s)	357, 500, 780, 807
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	300, 552
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	4 cut(s)	322, 337, 508, 724
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	3 cut(s)	124, 559, 803
BstMAI	GTCTC	2 cut(s)	4, 140
BstMBI	GATC	3 cut(s)	121, 556, 800
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 295, 382
BstNI	CCWGG	4 cut(s)	357, 500, 780, 807
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	4 cut(s)	355, 498, 778, 805
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	31, 743
BstX2I	RGATCY	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	218, 524, 594
BtsCI	GGATG	4 cut(s)	322, 337, 508, 724
BtsIMutI	CAGTG	1 cut(s)	747
Cac8I	GCNNGC	2 cut(s)	300, 552
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	695
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	360, 446
CviAII	CATG	6 cut(s)	461, 526, 605, 692, 770, 917
CviQI	GTAC	2 cut(s)	360, 446
DdeI	CTNAG	1 cut(s)	477
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	3 cut(s)	123, 558, 802
DpnII	GATC	3 cut(s)	121, 556, 800
DraI	TTTAAA	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	522, 592
Eco130I	CCWWGG	3 cut(s)	213, 327, 873
Eco47I	GGWCC	1 cut(s)	695
EcoRII	CCWGG	4 cut(s)	355, 498, 778, 805
EcoT14I	CCWWGG	3 cut(s)	213, 327, 873
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	3 cut(s)	213, 327, 873
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	6 cut(s)	464, 529, 608, 695, 773, 920
FatI	CATG	6 cut(s)	460, 525, 604, 691, 769, 916
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	20, 198, 757
FokI	GGATG	4 cut(s)	329, 344, 515, 711
Fsp4HI	GCNGC	3 cut(s)	20, 198, 757
FspBI	CTAG	5 cut(s)	290, 347, 717, 899, 927
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	20, 198, 757
GsuI	CTGGAG	3 cut(s)	705, 789, 801
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	218, 524, 594
HapII	CCGG	1 cut(s)	698
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	6 cut(s)	464, 529, 608, 695, 773, 920
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	493, 622, 775, 839
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	4 cut(s)	80, 821, 878, 889
Hpy166II	GTNNAC	2 cut(s)	172, 455
Hpy188I	TCNGA	3 cut(s)	9, 121, 394
Hpy188III	TCNNGA	4 cut(s)	112, 158, 347, 698
Hpy8I	GTNNAC	2 cut(s)	172, 455
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	164, 353, 791
HpyCH4V	TGCA	7 cut(s)	19, 76, 436, 466, 490, 506, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 295, 382
HpyF3I	CTNAG	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	6 cut(s)	464, 529, 608, 695, 773, 920
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	121, 556, 800
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	2 cut(s)	31, 743
LweI	GCATC	5 cut(s)	6, 322, 493, 537, 860
MaeI	CTAG	5 cut(s)	290, 347, 717, 899, 927
MaeIII	GTNAC	2 cut(s)	80, 178
MalI	GATC	3 cut(s)	123, 558, 802
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	3 cut(s)	121, 556, 800
MboII	GAAGA	5 cut(s)	80, 363, 525, 713, 716
MflI	RGATCY	1 cut(s)	800
MlsI	TGGCCA	2 cut(s)	524, 594
MluCI	AATT	6 cut(s)	63, 367, 379, 560, 858, 921
MluNI	TGGCCA	2 cut(s)	524, 594
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	784, 848
Mox20I	TGGCCA	2 cut(s)	524, 594
MroI	TCCGGA	1 cut(s)	697
MscI	TGGCCA	2 cut(s)	524, 594
MseI	TTAA	2 cut(s)	263, 894
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	2 cut(s)	524, 594
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	4 cut(s)	357, 500, 780, 807
MvaI	CCWGG	4 cut(s)	357, 500, 780, 807
MwoI	GCNNNNNNNGC	3 cut(s)	203, 295, 382
NarI	GGCGCC	1 cut(s)	195
NdeII	GATC	3 cut(s)	121, 556, 800
NlaIII	CATG	6 cut(s)	464, 529, 608, 695, 773, 920
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	80, 178
NspI	RCATGY	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	677
PciI	ACATGT	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	493, 622
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	812
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	3 cut(s)	21, 199, 758
PleI	GAGTC	2 cut(s)	783, 847
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	2 cut(s)	783, 847
PscI	ACATGT	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	894
Psp6I	CCWGG	4 cut(s)	355, 498, 778, 805
PspGI	CCWGG	4 cut(s)	355, 498, 778, 805
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	361, 447
RsaNI	GTAC	2 cut(s)	360, 446
RseI	CAYNNNNRTG	1 cut(s)	677
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	263, 894
SatI	GCNGC	3 cut(s)	20, 198, 757
Sau3AI	GATC	3 cut(s)	121, 556, 800
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	2 cut(s)	784, 848
ScrFI	CCNGG	4 cut(s)	357, 500, 780, 807
SfaNI	GCATC	5 cut(s)	6, 322, 493, 537, 860
SfcI	CTRYAG	1 cut(s)	275
SfoI	GGCGCC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SpeI	ACTAGT	1 cut(s)	716
Sse9I	AATT	6 cut(s)	63, 367, 379, 560, 858, 921
SsiI	CCGC	3 cut(s)	53, 139, 198
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	5 cut(s)	290, 347, 717, 899, 927
StyD4I	CCNGG	4 cut(s)	355, 498, 778, 805
StyI	CCWWGG	3 cut(s)	213, 327, 873
TaqI	TCGA	3 cut(s)	57, 171, 642
TasI	AATT	6 cut(s)	63, 367, 379, 560, 858, 921
TatI	WGTACW	1 cut(s)	445
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	493, 622
Tru1I	TTAA	2 cut(s)	263, 894
Tru9I	TTAA	2 cut(s)	263, 894
TscAI	CASTG	1 cut(s)	754
TseFI	GTSAC	2 cut(s)	80, 178
TseI	GCWGC	2 cut(s)	19, 756
Tsp45I	GTSAC	2 cut(s)	80, 178
TspDTI	ATGAA	6 cut(s)	248, 248, 327, 413, 426, 680
TspRI	CASTG	1 cut(s)	754
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	1 cut(s)	379
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	5 cut(s)	290, 347, 717, 899, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.