Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003469.1

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

21655 .. 21993

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003469.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggcctatgaaaacaaacccaacacggtcctggacgctgatgcgcaaagaagattgggaaggggaaagatcgagatcaagcggatcgaaaacaccaccaatcgtcaagtcaccttctgcaaaaggcgcaatggtttgctcaagaaggcctatgagctctctgtgctctgtgatgctgaggttgctctcatagtcttctccaaccgtggccgcctctatgagtattcaaacaacaggtataacacttacttggttcttctcttcttcctcttcccaattccctcaaagtcctggcgtttcattttacccaagtttcacaaagttttttgctttctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

112

Amino Acids

13.3

Weight (kDa)

9.96

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
AciI	CCGC	2 cut(s)	82, 211
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	228
AjnI	CCWGG	2 cut(s)	30, 290
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	2 cut(s)	159, 168
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	3 cut(s)	3, 147, 208
AspLEI	GCGC	2 cut(s)	46, 129
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	2 cut(s)	159, 168
BbvCI	CCTCAGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	32, 292
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	32, 292
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	32, 292
BmsI	GCATC	2 cut(s)	31, 163
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	32, 292
BseDI	CCNNGG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	5, 149, 210
BsiHKAI	GWGCWC	2 cut(s)	159, 168
BsnI	GGCC	3 cut(s)	5, 149, 210
Bsp1286I	GDGCHC	2 cut(s)	159, 168
Bsp143I	GATC	3 cut(s)	69, 75, 84
BspACI	CCGC	2 cut(s)	82, 211
BspANI	GGCC	3 cut(s)	5, 149, 210
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	3 cut(s)	69, 75, 84
Bst2UI	CCWGG	2 cut(s)	32, 292
Bst4CI	ACNGT	2 cut(s)	28, 206
Bst6I	CTCTTC	2 cut(s)	266, 275
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	46, 129
BstKTI	GATC	3 cut(s)	72, 78, 87
BstMBI	GATC	3 cut(s)	69, 75, 84
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 163, 182
BstNI	CCWGG	2 cut(s)	32, 292
BstSCI	CCNGG	2 cut(s)	30, 290
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	5, 149, 210
BtgI	CCRYGG	1 cut(s)	205
CfoI	GCGC	2 cut(s)	46, 129
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	44
CviJI	RGCY	4 cut(s)	5, 149, 157, 210
CviKI_1	RGCY	4 cut(s)	5, 149, 157, 210
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	71, 77, 86
DpnII	GATC	3 cut(s)	69, 75, 84
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	266, 275
EarI	CTCTTC	2 cut(s)	266, 275
Ecl136II	GAGCTC	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	30, 290
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	5 cut(s)	9, 153, 191, 219, 240
Fnu4HI	GCNGC	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	211
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	2 cut(s)	45, 128
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	5, 149, 210
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	46, 129
Hin6I	GCGC	2 cut(s)	44, 127
HinP1I	GCGC	2 cut(s)	44, 127
HphI	GGTGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	73, 142
HpyAV	CCTTC	3 cut(s)	54, 124, 139
HpyCH4III	ACNGT	2 cut(s)	28, 206
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 163, 182
HpyF3I	CTNAG	1 cut(s)	177
HspAI	GCGC	2 cut(s)	44, 127
Kzo9I	GATC	3 cut(s)	69, 75, 84
LpnPI	CCDG	5 cut(s)	17, 44, 220, 277, 304
LweI	GCATC	2 cut(s)	31, 163
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	71, 77, 86
MboI	GATC	3 cut(s)	69, 75, 84
MboII	GAAGA	6 cut(s)	63, 187, 248, 253, 256, 262
MhlI	GDGCHC	2 cut(s)	159, 168
MluCI	AATT	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	172, 224, 278, 292
MseI	TTAA	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	32, 292
MvaI	CCWGG	2 cut(s)	32, 292
MwoI	GCNNNNNNNGC	3 cut(s)	126, 163, 182
NdeII	GATC	3 cut(s)	69, 75, 84
NmuCI	GTSAC	1 cut(s)	109
NsbI	TGCGCA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	30, 290
PspGI	CCWGG	2 cut(s)	30, 290
PspPI	GGNCC	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	337
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	3 cut(s)	69, 75, 84
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	32, 292
SduI	GDGCHC	2 cut(s)	159, 168
SetI	ASST	4 cut(s)	116, 159, 183, 239
SfaNI	GCATC	2 cut(s)	31, 163
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	276
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	82, 211
SstI	GAGCTC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	30, 290
TaaI	ACNGT	2 cut(s)	28, 206
TaqI	TCGA	2 cut(s)	72, 87
TasI	AATT	1 cut(s)	276
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	24, 289
VpaK11BI	GGWCC	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.