Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

107348 .. 107866

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0001400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAGCATGAGCTGCGTGACAGCAAGAAAAGAGTAAGAGAAGGAGATGAAGAACATATGATTTGTTCAGAGAAGCATGCAAAGACCAAATTGGATGATGATATAAATGGTATTTTTGACTTGAAAAATGAGGTGCCTGAATACAACTGCAACCACAGCGGGGGCGGCAGCAGCAACAGTAGCATAACTGTTAATAGTAGTTGTAAGACATCATCATCATCAGATTCCCATGATTACTGTGACTTGGCATTGGGGGTATTTGATTTCCCGTGGCTGAAAGATGGTGTAATCTCGAAATCAGATCAGGAGTACTGGAATTTTGAAGACGTCTTCTCATCACCCCTAGAATATGATCAGATTAACACATCCACCCTAAGTACTATTTCAGCTGGAGCTCGTATTGAATTTTCTAATTTCAGCTGGCAATGTTTCTATGATGAGACTGATCCGGATAAAAAGGTAGAATTTCCAGAAGACAAGCCCAAGCTTGAGGAAGATGTGTGGCGTGCGCCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

172

Amino Acids

19.61

Weight (kDa)

4.5

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	2 cut(s)	159, 165
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	3 cut(s)	316, 404, 464
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	311, 379
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	124, 323, 404
AluBI	AGCT	5 cut(s)	13, 389, 395, 420, 487
AluI	AGCT	5 cut(s)	13, 389, 395, 420, 487
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	13, 168, 171
ApoI	RAATTY	3 cut(s)	316, 404, 464
AspLEI	GCGC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	3 cut(s)	322, 330, 480
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	180, 183
BccI	CCATC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	4 cut(s)	14, 166, 169, 172
BlsI	GCNGC	4 cut(s)	15, 167, 170, 173
BmcAI	AGTACT	2 cut(s)	311, 379
BmiI	GGNNCC	1 cut(s)	135
BpiI	GAAGAC	3 cut(s)	322, 330, 480
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	431
BseAI	TCCGGA	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	100, 365
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	180, 183
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	301, 352, 445
BspACI	CCGC	2 cut(s)	159, 165
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	301, 352, 445
BssNI	GRCGYC	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	179, 190, 239
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	3 cut(s)	78, 422, 507
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	100, 365
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	3 cut(s)	304, 355, 448
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	301, 352, 445
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 156, 165, 171, 180
BstNSI	RCATGY	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	180, 183
BstV2I	GAAGAC	3 cut(s)	322, 330, 480
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	100, 365
Cac8I	GCNNGC	3 cut(s)	78, 422, 507
CfoI	GCGC	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	310, 378
CviAII	CATG	3 cut(s)	8, 77, 230
CviJI	RGCY	7 cut(s)	13, 274, 389, 395, 420, 481, 487
CviKI_1	RGCY	7 cut(s)	13, 274, 389, 395, 420, 481, 487
CviQI	GTAC	2 cut(s)	310, 378
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	3 cut(s)	303, 354, 447
DpnII	GATC	3 cut(s)	301, 352, 445
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	3 cut(s)	11, 80, 233
FaiI	YATR	9 cut(s)	9, 57, 59, 78, 104, 185, 231, 351, 435
FatI	CATG	3 cut(s)	7, 76, 229
FauI	CCCGC	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	14, 166, 169, 172
FokI	GGATG	2 cut(s)	107, 352
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	4 cut(s)	14, 166, 169, 172
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	4 cut(s)	14, 166, 169, 172
GsuI	CTGGAG	1 cut(s)	411
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	11, 80, 233
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	330
Hpy188I	TCNGA	4 cut(s)	70, 223, 301, 357
Hpy188III	TCNNGA	4 cut(s)	292, 305, 449, 470
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	3 cut(s)	179, 190, 239
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	80, 150
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 156, 165, 171, 180
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	11, 80, 233
HspAI	GCGC	1 cut(s)	509
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	301, 352, 445
LmnI	GCTCC	2 cut(s)	4, 392
LpnPI	CCDG	7 cut(s)	150, 290, 298, 375, 406, 462, 483
Lsp1109I	GCAGC	2 cut(s)	180, 183
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	17, 239
MalI	GATC	3 cut(s)	303, 354, 447
MboI	GATC	3 cut(s)	301, 352, 445
MboII	GAAGA	5 cut(s)	62, 322, 335, 485, 506
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	5 cut(s)	89, 316, 404, 412, 464
MnlI	CCTC	2 cut(s)	124, 484
MroI	TCCGGA	1 cut(s)	448
MseI	TTAA	3 cut(s)	192, 360, 517
MspA1I	CMGCKG	3 cut(s)	159, 389, 420
MspI	CCGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	5 cut(s)	13, 156, 165, 171, 180
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	3 cut(s)	301, 352, 445
NlaIII	CATG	3 cut(s)	11, 80, 233
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	17, 239
NspI	RCATGY	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	15, 167, 170, 173
Psp124BI	GAGCTC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	135
PvuII	CAGCTG	2 cut(s)	389, 420
RsaI	GTAC	2 cut(s)	311, 379
RsaNI	GTAC	2 cut(s)	310, 378
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	192, 360, 517
SatI	GCNGC	4 cut(s)	14, 166, 169, 172
Sau3AI	GATC	3 cut(s)	301, 352, 445
ScaI	AGTACT	2 cut(s)	311, 379
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	8 cut(s)	15, 135, 330, 391, 397, 422, 462, 489
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	5 cut(s)	89, 316, 404, 412, 464
SsiI	CCGC	2 cut(s)	159, 165
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	179, 190, 239
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	293
TasI	AATT	5 cut(s)	89, 316, 404, 412, 464
TatI	WGTACW	2 cut(s)	309, 377
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	192, 360, 517
Tru9I	TTAA	3 cut(s)	192, 360, 517
TseFI	GTSAC	2 cut(s)	17, 239
TseI	GCWGC	3 cut(s)	13, 168, 171
Tsp45I	GTSAC	2 cut(s)	17, 239
TspDTI	ATGAA	1 cut(s)	63
XapI	RAATTY	3 cut(s)	316, 404, 464
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	344
ZraI	GACGTC	1 cut(s)	328
ZrmI	AGTACT	2 cut(s)	311, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.