Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

3857904 .. 3864492

Gene Structure 6589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCTATGAAAACAAACCAAACACTGACCTGGACGCTGATGCCCAAAGAAGATTGGGAAGGGGAAAGATAGAGATCAAGCGGATCGAAAACACCACCAATCGCCAAGTTACCTTCTGCAAAAGGCGCAATGGTTTGCTCAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGCCTCTATGAGTATTCCAACAACAGCAGTGTTAGAGAAACGATTGAACGATACAAGAAGGCATGTGCAGATACTTCAACTAATGGATCTGCCTCAGAAGCTACTGCTCAGTACTATCAGCAAGAAGCTGCCAAGCTGCGCAACCAGATAAATGCTTTGCAGAACAGTAACAGGGGTTATATGGCTGAGGGTTTAAGCAATATGAATATCAAGGAGCTCAAGGGCATGGAGAGCAAACTTGAGAAAGCAATTACCAGAATTAGATCCAAGAAGAATGAACTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTTGACTTGCATAACAATAACCAGCTCCTCCGAGCAAAGGGGCAGATAGCTGAGAATGAGAGGCAACAGCAGAGCATAAATGCAATTGCAGGAGGGCATGGAAGCTATGAGATCGTGCAGCCGACTCAGCCCTTTCATGAGGCTCGCAACTATTTTCAAGTGAATGCTTTGCAACCCAATATTCATCAGTACTCGCGCCATGACCAAGTTTCCCTTCAGTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

252

Amino Acids

28.8

Weight (kDa)

9.31

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	28 - 75	1.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	103 - 190	1.2e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	350
AccII	CGCG	1 cut(s)	724
AciI	CCGC	2 cut(s)	82, 211
AclWI	GGATC	3 cut(s)	92, 304, 468
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	3 cut(s)	323, 512, 719
AfiI	CCNNNNNNNGG	1 cut(s)	565
AgsI	TTSAA	3 cut(s)	257, 288, 686
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	1 cut(s)	726
AluBI	AGCT	8 cut(s)	157, 311, 338, 346, 427, 553, 578, 633
AluI	AGCT	8 cut(s)	157, 311, 338, 346, 427, 553, 578, 633
Alw21I	GWGCWC	3 cut(s)	159, 168, 429
AlwI	GGATC	3 cut(s)	92, 304, 468
AoxI	GGCC	3 cut(s)	3, 147, 208
ApeKI	GCWGC	3 cut(s)	338, 346, 646
AspLEI	GCGC	3 cut(s)	129, 351, 726
BanII	GRGCYC	2 cut(s)	159, 429
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	3 cut(s)	159, 168, 429
BbvCI	CCTCAGC	2 cut(s)	177, 396
BbvI	GCAGC	3 cut(s)	325, 333, 658
BciT130I	CCWGG	1 cut(s)	32
BisI	GCNGC	4 cut(s)	211, 339, 347, 647
BlsI	GCNGC	4 cut(s)	212, 340, 348, 648
BmcAI	AGTACT	2 cut(s)	323, 719
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	31, 163
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	2 cut(s)	177, 396
BpuEI	CTTGAG	3 cut(s)	125, 413, 470
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	6 cut(s)	168, 318, 332, 387, 570, 668
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	325, 333, 658
BsgI	GTGCAG	2 cut(s)	297, 665
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	3 cut(s)	5, 149, 210
BsiHKAI	GWGCWC	3 cut(s)	159, 168, 429
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	5, 149, 210
Bsp1286I	GDGCHC	3 cut(s)	159, 168, 429
Bsp143I	GATC	5 cut(s)	75, 84, 296, 473, 639
BspACI	CCGC	2 cut(s)	82, 211
BspANI	GGCC	3 cut(s)	5, 149, 210
BspCNI	CTCAG	6 cut(s)	169, 317, 331, 388, 571, 667
BspFNI	CGCG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	664
BspPI	GGATC	3 cut(s)	92, 304, 468
BsrDI	GCAATG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	5 cut(s)	75, 84, 296, 473, 639
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	206, 377
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	6 cut(s)	177, 304, 318, 396, 579, 654
BstDSI	CCRYGG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	3 cut(s)	129, 351, 726
BstKTI	GATC	5 cut(s)	78, 87, 299, 476, 642
BstMBI	GATC	5 cut(s)	75, 84, 296, 473, 639
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 163, 182, 308, 441, 655
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	2 cut(s)	276, 517
BstSCI	CCNGG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	325, 333, 658
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	296, 473
BstYI	RGATCY	2 cut(s)	296, 473
BsuRI	GGCC	3 cut(s)	5, 149, 210
BtgI	CCRYGG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	24, 244
Cac8I	GCNNGC	1 cut(s)	673
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	3 cut(s)	129, 351, 726
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	322, 511, 718
CviAII	CATG	6 cut(s)	273, 436, 514, 626, 665, 728
CviQI	GTAC	3 cut(s)	322, 511, 718
DdeI	CTNAG	6 cut(s)	177, 304, 318, 396, 579, 654
DpnI	GATC	5 cut(s)	77, 86, 298, 475, 641
DpnII	GATC	5 cut(s)	75, 84, 296, 473, 639
EaeI	YGGCCR	1 cut(s)	208
Ecl136II	GAGCTC	2 cut(s)	157, 427
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	159, 429
Eco53kI	GAGCTC	2 cut(s)	157, 427
Eco57I	CTGAAG	1 cut(s)	728
EcoICRI	GAGCTC	2 cut(s)	157, 427
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	159, 429
FaeI	CATG	6 cut(s)	276, 439, 517, 629, 668, 731
FalI	AAGNNNNNCTT	1 cut(s)	726
FatI	CATG	6 cut(s)	272, 435, 513, 625, 664, 727
Fnu4HI	GCNGC	4 cut(s)	211, 339, 347, 647
FriOI	GRGCYC	2 cut(s)	159, 429
Fsp4HI	GCNGC	4 cut(s)	211, 339, 347, 647
FspI	TGCGCA	1 cut(s)	350
GlaI	GCGC	3 cut(s)	128, 350, 725
GluI	GCNGC	4 cut(s)	211, 339, 347, 647
HaeIII	GGCC	3 cut(s)	5, 149, 210
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	3 cut(s)	129, 351, 726
Hin1II	CATG	6 cut(s)	276, 439, 517, 629, 668, 731
Hin6I	GCGC	3 cut(s)	127, 349, 724
HinP1I	GCGC	3 cut(s)	127, 349, 724
HinfI	GANTC	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	307, 560
Hpy188III	TCNNGA	2 cut(s)	142, 665
HpyAV	CCTTC	5 cut(s)	54, 124, 139, 262, 752
HpyCH4III	ACNGT	2 cut(s)	206, 377
HpyCH4V	TGCA	9 cut(s)	120, 278, 370, 517, 538, 611, 617, 646, 700
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 163, 182, 308, 441, 655
HpyF3I	CTNAG	6 cut(s)	177, 304, 318, 396, 579, 654
Hsp92II	CATG	6 cut(s)	276, 439, 517, 629, 668, 731
HspAI	GCGC	3 cut(s)	127, 349, 724
Kzo9I	GATC	5 cut(s)	75, 84, 296, 473, 639
LmnI	GCTCC	2 cut(s)	424, 558
LpnPI	CCDG	7 cut(s)	17, 44, 367, 368, 478, 563, 603
Lsp1109I	GCAGC	3 cut(s)	325, 333, 658
LweI	GCATC	2 cut(s)	31, 163
MaeIII	GTNAC	2 cut(s)	109, 377
MalI	GATC	5 cut(s)	77, 86, 298, 475, 641
MboI	GATC	5 cut(s)	75, 84, 296, 473, 639
MboII	GAAGA	3 cut(s)	63, 187, 493
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	2 cut(s)	296, 473
MhlI	GDGCHC	3 cut(s)	159, 168, 429
MluCI	AATT	4 cut(s)	459, 468, 504, 612
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	8 cut(s)	172, 224, 313, 391, 566, 582, 614, 661
MseI	TTAA	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	6 cut(s)	126, 163, 182, 308, 441, 655
NdeII	GATC	5 cut(s)	75, 84, 296, 473, 639
NlaIII	CATG	6 cut(s)	276, 439, 517, 629, 668, 731
NsbI	TGCGCA	1 cut(s)	350
NspI	RCATGY	2 cut(s)	276, 517
PagI	TCATGA	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	697
PkrI	GCNGC	4 cut(s)	212, 340, 348, 648
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp124BI	GAGCTC	2 cut(s)	159, 429
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	296, 473
RsaI	GTAC	3 cut(s)	323, 512, 719
RsaNI	GTAC	3 cut(s)	322, 511, 718
SacI	GAGCTC	2 cut(s)	159, 429
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	4 cut(s)	211, 339, 347, 647
Sau3AI	GATC	5 cut(s)	75, 84, 296, 473, 639
ScaI	AGTACT	2 cut(s)	323, 719
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	3 cut(s)	159, 168, 429
SfaNI	GCATC	2 cut(s)	31, 163
SmlI	CTYRAG	3 cut(s)	140, 428, 449
SmoI	CTYRAG	3 cut(s)	140, 428, 449
Sse9I	AATT	4 cut(s)	459, 468, 504, 612
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	82, 211
SspI	AATATT	1 cut(s)	709
SstI	GAGCTC	2 cut(s)	159, 429
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	206, 377
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	459, 468, 504, 612
TatI	WGTACW	3 cut(s)	321, 510, 717
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	31, 244
TseI	GCWGC	3 cut(s)	338, 346, 646
TspDTI	ATGAA	5 cut(s)	24, 428, 501, 653, 701
TspRI	CASTG	2 cut(s)	31, 244
XceI	RCATGY	2 cut(s)	276, 517
ZrmI	AGTACT	2 cut(s)	323, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.