Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

25005248 .. 25012442

Gene Structure 7195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCCTATGAAAGCAAATCCTTGTCCATGGACTCTCCCCAGAGAAAATTGGGTAGGGGAAAGATCGAGATTAAGCGGATCGAAAACACGACAAATCGTCAAGTGACCTTCTGCAAGAGGCGCAATGGGTTGCTTAAGAAGGCCTATGAACTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGCCTCTATGAGTATGCCAACAATAGTGTTAAAGGAACAATTGAGAGGTACAAGAAGGCATGTGCAGATTCTTCAAATACTGGATCAGTTTCTGAAGCTAGTACTCAGTACTACCAGCAAGAAGCTGCGAAATTGCGTGCGCAGATAGTGAAATTGCAGAATGACAACCGGAATATGATGGGTGATGCATTGAGTAGAATGTCTGTCAAGGACCTGAAGAGCCTGGAGAATAAACTGGAGAAAGGAATTAGCAGAATCCGATCCAAAAAGAATGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTGGACTTGCACAACAATAACCAGCTCCTACGAGCAAAGATAGCTGAGAATGAGAGGGGCCAGCAGAACATAAATGTAATGGCTGGAGGAGGAAGCTATGAGATCCTGCAGTCTCAGCCATACGACTCTCGGGACTATTTCCAAGTGAACGTGTTACAACCCAATAATCACTACAATCCCCGCCACGATCAGATTTCCCTTCAATTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

244

Amino Acids

27.92

Weight (kDa)

9.5

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	345
AciI	CCGC	3 cut(s)	76, 205, 700
AclWI	GGATC	4 cut(s)	86, 295, 459, 616
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	318, 440
AfaI	GTAC	4 cut(s)	254, 307, 314, 503
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	2 cut(s)	279, 722
AhdI	GACNNNNNGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	6 cut(s)	302, 329, 481, 544, 563, 615
AluI	AGCT	6 cut(s)	302, 329, 481, 544, 563, 615
Alw21I	GWGCWC	2 cut(s)	162, 483
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	4 cut(s)	86, 295, 459, 616
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	4 cut(s)	3, 141, 202, 577
ApeKI	GCWGC	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	123, 346
AspS9I	GGNCC	2 cut(s)	415, 577
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	162, 483
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	626
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	205, 330
BlsI	GCNGC	2 cut(s)	206, 331
BmcAI	AGTACT	2 cut(s)	307, 314
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	415, 577
BmiI	GGNNCC	1 cut(s)	578
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	157, 379
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	3 cut(s)	449, 461, 624
Bpu10I	CCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	27, 199
BsaWI	WCCGGW	1 cut(s)	372
Bse1I	ACTGG	3 cut(s)	289, 444, 525
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	27, 199
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	4 cut(s)	162, 323, 555, 647
BseNI	ACTGG	3 cut(s)	289, 444, 525
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	5, 143, 204, 579
BsiHKAI	GWGCWC	2 cut(s)	162, 483
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	665
BsnI	GGCC	4 cut(s)	5, 143, 204, 579
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	162, 483
Bsp143I	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	76, 205, 700
BspANI	GGCC	4 cut(s)	5, 143, 204, 579
BspCNI	CTCAG	4 cut(s)	163, 322, 556, 646
BspLI	GGNNCC	1 cut(s)	578
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	4 cut(s)	86, 295, 459, 616
BspQI	GCTCTTC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	289, 444, 525
BssECI	CCNNGG	2 cut(s)	27, 199
BssMI	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	416
BstAFI	CTTAAG	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	342, 581
BstDEI	CTNAG	4 cut(s)	171, 309, 564, 633
BstDSI	CCRYGG	2 cut(s)	27, 199
BstHHI	GCGC	2 cut(s)	123, 346
BstKTI	GATC	6 cut(s)	66, 81, 290, 467, 624, 709
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 176, 560, 634
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	267, 508
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	5, 143, 204, 579
BtgI	CCRYGG	2 cut(s)	27, 199
Cac8I	GCNNGC	2 cut(s)	342, 581
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	2 cut(s)	123, 346
Cfr13I	GGNCC	2 cut(s)	415, 577
Csp6I	GTAC	4 cut(s)	253, 306, 313, 502
CviAII	CATG	3 cut(s)	28, 264, 505
CviQI	GTAC	4 cut(s)	253, 306, 313, 502
DdeI	CTNAG	4 cut(s)	171, 309, 564, 633
DpnI	GATC	6 cut(s)	65, 80, 289, 466, 623, 708
DpnII	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
DriI	GACNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	416
Eam1105I	GACNNNNNGTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	416
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	318, 440
Eco88I	CYCGRG	1 cut(s)	648
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	31, 267, 508
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	3 cut(s)	27, 263, 504
FauI	CCCGC	1 cut(s)	707
Fnu4HI	GCNGC	2 cut(s)	205, 330
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	2 cut(s)	205, 330
FspBI	CTAG	1 cut(s)	303
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	2 cut(s)	122, 345
GluI	GCNGC	2 cut(s)	205, 330
GsuI	CTGGAG	3 cut(s)	449, 461, 624
HaeIII	GGCC	4 cut(s)	5, 143, 204, 579
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	2 cut(s)	123, 346
Hin1II	CATG	3 cut(s)	31, 267, 508
Hin6I	GCGC	2 cut(s)	121, 344
HinP1I	GCGC	2 cut(s)	121, 344
HinfI	GANTC	4 cut(s)	32, 272, 459, 644
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	3 cut(s)	298, 464, 711
Hpy188III	TCNNGA	2 cut(s)	67, 650
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	4 cut(s)	118, 133, 253, 728
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	7 cut(s)	114, 269, 361, 392, 508, 529, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 176, 560, 634
HpyF3I	CTNAG	4 cut(s)	171, 309, 564, 633
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	31, 267, 508
HspAI	GCGC	2 cut(s)	121, 344
Kzo9I	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	157, 379
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	103, 672
MalI	GATC	6 cut(s)	65, 80, 289, 466, 623, 708
MboI	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
MboII	GAAGA	3 cut(s)	181, 267, 433
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	162, 483
MluCI	AATT	7 cut(s)	47, 243, 335, 356, 450, 495, 722
MlyI	GAGTC	2 cut(s)	26, 638
MnlI	CCTC	7 cut(s)	111, 166, 218, 243, 567, 599, 602
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	3 cut(s)	72, 135, 234
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	4 cut(s)	120, 176, 560, 634
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
NlaIII	CATG	3 cut(s)	31, 267, 508
NlaIV	GGNNCC	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	2 cut(s)	267, 508
PceI	AGGCCT	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	272, 459
PkrI	GCNGC	2 cut(s)	206, 331
PleI	GAGTC	2 cut(s)	26, 638
PpsI	GAGTC	2 cut(s)	26, 638
PpuMI	RGGWCCY	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	578
PspPI	GGNCC	2 cut(s)	415, 577
PspPPI	RGGWCCY	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	621
RsaI	GTAC	4 cut(s)	254, 307, 314, 503
RsaNI	GTAC	4 cut(s)	253, 306, 313, 502
SacI	GAGCTC	1 cut(s)	483
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	72, 135, 234
SatI	GCNGC	2 cut(s)	205, 330
Sau3AI	GATC	6 cut(s)	63, 78, 287, 464, 621, 706
Sau96I	GGNCC	2 cut(s)	415, 577
ScaI	AGTACT	2 cut(s)	307, 314
SchI	GAGTC	2 cut(s)	26, 638
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	162, 483
SfaNI	GCATC	2 cut(s)	157, 379
SfcI	CTRYAG	1 cut(s)	626
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	7 cut(s)	47, 243, 335, 356, 450, 495, 722
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	3 cut(s)	76, 205, 700
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	2 cut(s)	66, 81
TasI	AATT	7 cut(s)	47, 243, 335, 356, 450, 495, 722
TatI	WGTACW	3 cut(s)	305, 312, 501
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	272, 459
Tru1I	TTAA	3 cut(s)	72, 135, 234
Tru9I	TTAA	3 cut(s)	72, 135, 234
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	24, 162
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	415
XceI	RCATGY	2 cut(s)	267, 508
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	2 cut(s)	307, 314
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.