Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003469.1

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

15960 .. 17227

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003469.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgctgttgatatccaggggttatatggctgagggtttgagcaatatgtctatcaaggagctcaagggcgtggagaccaaacttgagaaagcaattagcagaattagatccaagaaggaacttgacttgcacaacaataaccagctcctccgagcaaaggggcagatagctgagaatgagaggcaccagcaaagcataaatgcgattgcaggtgggcatggaagctacgagatcatgcagccgactcagccatttcatgaggctcgcaactattttcaagtgaatgctttgcaacccaatatccatcagtactcgcgccaggaccagatttcccttcaattagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

9.34

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	183
AccII	CGCG	1 cut(s)	316
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	278, 338
AjnI	CCWGG	2 cut(s)	14, 318
AluBI	AGCT	4 cut(s)	61, 145, 170, 225
AluI	AGCT	4 cut(s)	61, 145, 170, 225
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	16, 320
BcoDI	GTCTC	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	16, 320
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	16, 320
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	47, 104
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseBI	CCWGG	2 cut(s)	16, 320
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	3 cut(s)	21, 162, 260
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	107, 231
BspCNI	CTCAG	3 cut(s)	22, 163, 259
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	107, 231
Bst2UI	CCWGG	2 cut(s)	16, 320
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	30, 171, 246
BstFNI	CGCG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	110, 234
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	107, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	2 cut(s)	16, 320
BstSCI	CCNGG	2 cut(s)	14, 318
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	265
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	3 cut(s)	218, 235, 257
CviJI	RGCY	8 cut(s)	29, 61, 145, 170, 225, 241, 250, 263
CviKI_1	RGCY	8 cut(s)	29, 61, 145, 170, 225, 241, 250, 263
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	30, 171, 246
DpnI	GATC	2 cut(s)	109, 233
DpnII	GATC	2 cut(s)	107, 231
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	14, 318
EcoRV	GATATC	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	3 cut(s)	221, 238, 260
FaiI	YATR	7 cut(s)	24, 26, 47, 197, 219, 236, 258
FatI	CATG	3 cut(s)	217, 234, 256
Fnu4HI	GCNGC	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	239
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	221, 238, 260
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	109, 344
HpyCH4V	TGCA	4 cut(s)	130, 209, 238, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	30, 171, 246
Hsp92II	CATG	3 cut(s)	221, 238, 260
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	107, 231
LmnI	GCTCC	2 cut(s)	58, 150
LpnPI	CCDG	7 cut(s)	28, 155, 195, 200, 305, 332, 338
Lsp1109I	GCAGC	1 cut(s)	250
MalI	GATC	2 cut(s)	109, 233
MboI	GATC	2 cut(s)	107, 231
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	3 cut(s)	93, 102, 338
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	4 cut(s)	25, 158, 174, 253
MspR9I	CCNGG	2 cut(s)	16, 320
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	16, 320
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	2 cut(s)	107, 231
NlaIII	CATG	3 cut(s)	221, 238, 260
NlaIV	GGNNCC	1 cut(s)	185
PagI	TCATGA	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	200
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	14, 318
PspGI	CCWGG	2 cut(s)	14, 318
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	107, 231
Sau96I	GGNCC	1 cut(s)	322
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	16, 320
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	5 cut(s)	63, 147, 172, 214, 227
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	2 cut(s)	62, 83
SmoI	CTYRAG	2 cut(s)	62, 83
Sse9I	AATT	3 cut(s)	93, 102, 338
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	14, 318
TasI	AATT	3 cut(s)	93, 102, 338
TatI	WGTACW	1 cut(s)	309
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.