Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Forward (+)

9277323 .. 9277904

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G111300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCCTATGAAAACAAATCCATGTCTCTGGACTCTCCCCAAAGAAAATTGGGTTGGGGAAAGATCGAGGTCAAGCAGATCGAAAACACCACAAACCGTCAAGTCGCCTTCTGCAAAAAGCGCAATGGGTTGCTCAAGATGGCCTATGAACTCTCTCTACTCTGTGATGCAGAGGTTGCTCTCATAGTCTTCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

67

Amino Acids

7.5

Weight (kDa)

9.06

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
Alw26I	GTCTC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	3, 141
AspLEI	GCGC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	181
BccI	CCATC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	30
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	5, 143
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	5, 143
Bsp143I	GATC	2 cut(s)	63, 78
BspANI	GGCC	2 cut(s)	5, 143
BspHI	TCATGA	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	130
BssMI	GATC	2 cut(s)	63, 78
Bst4CI	ACNGT	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	66, 81
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	63, 78
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 176
BstV2I	GAAGAC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	5, 143
CciI	TCATGA	1 cut(s)	197
CfoI	GCGC	1 cut(s)	123
CviAII	CATG	2 cut(s)	22, 198
CviJI	RGCY	2 cut(s)	5, 143
CviKI_1	RGCY	2 cut(s)	5, 143
DpnI	GATC	2 cut(s)	65, 80
DpnII	GATC	2 cut(s)	63, 78
FaeI	CATG	2 cut(s)	25, 201
FaiI	YATR	5 cut(s)	9, 23, 147, 185, 199
FatI	CATG	2 cut(s)	21, 197
GlaI	GCGC	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	5, 143
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	25, 201
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	32
Hpy188III	TCNNGA	3 cut(s)	29, 136, 198
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	114, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 176
Hsp92II	CATG	2 cut(s)	25, 201
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	63, 78
LpnPI	CCDG	1 cut(s)	14
LweI	GCATC	1 cut(s)	157
MalI	GATC	2 cut(s)	65, 80
MboI	GATC	2 cut(s)	63, 78
MboII	GAAGA	2 cut(s)	181, 186
MluCI	AATT	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	61, 166
MwoI	GCNNNNNNNGC	2 cut(s)	120, 176
NdeII	GATC	2 cut(s)	63, 78
NlaIII	CATG	2 cut(s)	25, 201
PagI	TCATGA	1 cut(s)	197
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
Sau3AI	GATC	2 cut(s)	63, 78
SchI	GAGTC	1 cut(s)	26
SetI	ASST	2 cut(s)	72, 177
SfaNI	GCATC	1 cut(s)	157
SgeI	CNNG	6 cut(s)	34, 41, 79, 85, 113, 148
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	66, 81
TasI	AATT	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	24, 162, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.