Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Reverse (-)

86065006 .. 86071709

Gene Structure 6704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCTATGAAAACAAACCCAACACGGTCCTGGACGCTGATGCCCAAAGAAGATTGGGAAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACCACCAATCGTCAAGTCACCTTCTGCAAAAGGCGCAATGGTTTGCTCAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGCCTCTATGAGTATTCCAACAACAGTGTTAGAGAAACAATTGAACGATACAAGAAGGCATGTGCAGATGCTTCAAATAATGGATCTGTCTCTGAAGCTACTACTCAGTACTATCAACAAGAAGCTGCCAAACTGCGTGCCCAGATAACCACTTTGCAGAACAGTAACAGGGGTTATATGGCTGAGGGTTTGAGCAATATGTCTATCAAGGAGCTCAAGGGCGTGGAGACCAAACTTGAGAAAGCAATTAGCAGAATTAGATCCAAGAAGAATGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTTGACTTGCACAACAATAACCAGCTCCTCCGAGCAAAGATAGCTGAGAATGAGAGGCACCAGCAAAGCATAAATGCGATTGCAGGTGGGCATGGAAGCTACGAGATCATGCAGCCGACGCAGCCATTTCATGAGGCTCGCAACTATTTTCAAGTGAATGCTTTGCAACCCAATATCCATCAGTACTCGCGCCATGACCAGATTTCCCTTCAATTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

248

Amino Acids

28.53

Weight (kDa)

9.4

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	28 - 75	1.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	103 - 189	7.1e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	582
AccII	CGCG	1 cut(s)	715
AciI	CCGC	2 cut(s)	82, 211
AclWI	GGATC	3 cut(s)	92, 301, 465
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	320, 509, 710
AgsI	TTSAA	4 cut(s)	254, 285, 677, 737
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	8 cut(s)	157, 308, 335, 424, 487, 550, 569, 624
AluI	AGCT	8 cut(s)	157, 308, 335, 424, 487, 550, 569, 624
Alw21I	GWGCWC	4 cut(s)	159, 168, 426, 489
Alw26I	GTCTC	2 cut(s)	304, 431
AlwI	GGATC	3 cut(s)	92, 301, 465
AoxI	GGCC	3 cut(s)	3, 147, 208
ApeKI	GCWGC	3 cut(s)	335, 637, 646
AspLEI	GCGC	2 cut(s)	129, 717
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	3 cut(s)	159, 426, 489
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	4 cut(s)	159, 168, 426, 489
BbvCI	CCTCAGC	2 cut(s)	177, 393
BbvI	GCAGC	3 cut(s)	322, 649, 658
BccI	CCATC	1 cut(s)	711
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	304, 431
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	4 cut(s)	211, 336, 638, 647
BlsI	GCNGC	4 cut(s)	212, 337, 639, 648
BmcAI	AGTACT	2 cut(s)	320, 710
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	584
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	31, 163, 268
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	2 cut(s)	177, 393
BpuEI	CTTGAG	3 cut(s)	125, 410, 467
BsaBI	GATNNNNATC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	4 cut(s)	168, 329, 384, 561
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	322, 649, 658
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	715
BshFI	GGCC	3 cut(s)	5, 149, 210
BshNI	GGYRCC	1 cut(s)	582
BsiHKAI	GWGCWC	4 cut(s)	159, 168, 426, 489
BsmAI	GTCTC	2 cut(s)	304, 431
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	5, 149, 210
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	5 cut(s)	159, 168, 352, 426, 489
Bsp143I	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
BspACI	CCGC	2 cut(s)	82, 211
BspANI	GGCC	3 cut(s)	5, 149, 210
BspCNI	CTCAG	4 cut(s)	169, 328, 385, 562
BspFNI	CGCG	1 cut(s)	715
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	584
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	3 cut(s)	92, 301, 465
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	28, 206, 236, 374
BstC8I	GCNNGC	2 cut(s)	348, 664
BstDEI	CTNAG	4 cut(s)	177, 315, 393, 570
BstDSI	CCRYGG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	715
BstHHI	GCGC	2 cut(s)	129, 717
BstKTI	GATC	6 cut(s)	72, 78, 87, 296, 473, 633
BstMAI	GTCTC	2 cut(s)	304, 431
BstMBI	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 163, 182, 566, 643, 646
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	2 cut(s)	273, 514
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	715
BstV1I	GCAGC	3 cut(s)	322, 649, 658
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	293, 470
BstYI	RGATCY	2 cut(s)	293, 470
BsuRI	GGCC	3 cut(s)	5, 149, 210
BtgI	CCRYGG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	2 cut(s)	348, 664
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	2 cut(s)	129, 717
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	2 cut(s)	44, 652
Csp6I	GTAC	3 cut(s)	319, 508, 709
CviAII	CATG	6 cut(s)	270, 511, 617, 634, 656, 719
CviQI	GTAC	3 cut(s)	319, 508, 709
DdeI	CTNAG	4 cut(s)	177, 315, 393, 570
DpnI	GATC	6 cut(s)	71, 77, 86, 295, 472, 632
DpnII	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
EaeI	YGGCCR	1 cut(s)	208
Ecl136II	GAGCTC	3 cut(s)	157, 424, 487
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	3 cut(s)	159, 426, 489
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	3 cut(s)	157, 424, 487
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	3 cut(s)	157, 424, 487
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	3 cut(s)	159, 426, 489
FaeI	CATG	6 cut(s)	273, 514, 620, 637, 659, 722
FatI	CATG	6 cut(s)	269, 510, 616, 633, 655, 718
Fnu4HI	GCNGC	4 cut(s)	211, 336, 638, 647
FriOI	GRGCYC	3 cut(s)	159, 426, 489
Fsp4HI	GCNGC	4 cut(s)	211, 336, 638, 647
GlaI	GCGC	2 cut(s)	128, 716
GluI	GCNGC	4 cut(s)	211, 336, 638, 647
HaeIII	GGCC	3 cut(s)	5, 149, 210
HgaI	GACGC	2 cut(s)	44, 652
HhaI	GCGC	2 cut(s)	129, 717
Hin1II	CATG	6 cut(s)	273, 514, 620, 637, 659, 722
Hin6I	GCGC	2 cut(s)	127, 715
HinP1I	GCGC	2 cut(s)	127, 715
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	304, 557
Hpy188III	TCNNGA	3 cut(s)	73, 142, 656
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	5 cut(s)	54, 124, 139, 259, 743
HpyCH4III	ACNGT	4 cut(s)	28, 206, 236, 374
HpyCH4V	TGCA	8 cut(s)	120, 275, 367, 514, 535, 608, 637, 691
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 163, 182, 566, 643, 646
HpyF3I	CTNAG	4 cut(s)	177, 315, 393, 570
Hsp92II	CATG	6 cut(s)	273, 514, 620, 637, 659, 722
HspAI	GCGC	2 cut(s)	127, 715
Kzo9I	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
LmnI	GCTCC	2 cut(s)	421, 555
LpnPI	CCDG	8 cut(s)	17, 44, 364, 365, 560, 594, 599, 737
Lsp1109I	GCAGC	3 cut(s)	322, 649, 658
LweI	GCATC	3 cut(s)	31, 163, 268
MaeIII	GTNAC	2 cut(s)	109, 374
MalI	GATC	6 cut(s)	71, 77, 86, 295, 472, 632
MboI	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
MboII	GAAGA	3 cut(s)	63, 187, 490
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	2 cut(s)	293, 470
MhlI	GDGCHC	5 cut(s)	159, 168, 352, 426, 489
MluCI	AATT	5 cut(s)	249, 456, 465, 501, 737
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	6 cut(s)	172, 224, 388, 563, 573, 652
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	715
MwoI	GCNNNNNNNGC	6 cut(s)	126, 163, 182, 566, 643, 646
NdeII	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
NlaIII	CATG	6 cut(s)	273, 514, 620, 637, 659, 722
NlaIV	GGNNCC	1 cut(s)	584
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	273, 514
PagI	TCATGA	1 cut(s)	655
PaqCI	CACCTGC	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	688
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	212, 337, 639, 648
Psp124BI	GAGCTC	3 cut(s)	159, 426, 489
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	584
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	293, 470
RsaI	GTAC	3 cut(s)	320, 509, 710
RsaNI	GTAC	3 cut(s)	319, 508, 709
SacI	GAGCTC	3 cut(s)	159, 426, 489
SatI	GCNGC	4 cut(s)	211, 336, 638, 647
Sau3AI	GATC	6 cut(s)	69, 75, 84, 293, 470, 630
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	2 cut(s)	320, 710
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	5 cut(s)	159, 168, 352, 426, 489
SfaNI	GCATC	3 cut(s)	31, 163, 268
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	3 cut(s)	140, 425, 446
SmoI	CTYRAG	3 cut(s)	140, 425, 446
Sse9I	AATT	5 cut(s)	249, 456, 465, 501, 737
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	82, 211
SstI	GAGCTC	3 cut(s)	159, 426, 489
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	28, 206, 236, 374
TaqI	TCGA	2 cut(s)	72, 87
TasI	AATT	5 cut(s)	249, 456, 465, 501, 737
TatI	WGTACW	3 cut(s)	318, 507, 708
TauI	GCSGC	1 cut(s)	213
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	335, 637, 646
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	24, 644
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	2 cut(s)	273, 514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
ZrmI	AGTACT	2 cut(s)	320, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.