Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003087

Physical Location & Seq

Genomic Coordinates Forward (+)

8100765 .. 8107226

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG091800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCTCTTCCTCCTCTATATCCCATCAATCATTCACAGATTGTGGAAAAGAAAAGAAGTCTAAGAAAAAACCCAAAAGCTGCAACTATGGCCTATGAAAACAAACCCAACACGGTCCTGGACTCTGATGCCCAAAGAAGATTGGGAAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACCACCAATCGTCAAGTCACCTTCTGCAAAAGGCGCAATGGTTTGCTCAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCTAACCGTGGCCGACTCTATGAGTATTCCAACAACAGTGTTAGAGAAACAATTGAACGATACAAGAAGGCATGTGCAGATTCTTCAAATAATGGATCTGTCTCTGAAGCTACTACTCAGTACTATCAGCAAGAAGCTGCCAAACTGCGTGCCCAGATAACCACTTTGCAGAACAGTAATAGGGGTTATATGGCTGAGGGTTTGAGCAATATGTCTATCAAGGAGCTCAAGGGCGTGGAGACCAAACTTGAGAAAGCAATTAGCAGAATTAGATCCAAGAAGAACGAGCTCTTGTTTGCCGAAATTGAGTACATGCAGAAAAGGGAACTTGACTTGCACAACAATAACCAGCTCCTCCGAGCAAAGATAGCTGAGAATGAGAGGCACCAGCAAAGCATAAATGCGATTGCAGGTGGGCATGGAAGCTACGAGATCATGCAGCCGACTCAGCCATTTCATGAGGCTCGCAACTATTTTCAAGTGAATGCTTTGCAACCCAATATCCATCAGTACTCGCGCCATGACCAGATTTCCCTTCAATTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

277

Amino Acids

31.86

Weight (kDa)

9.65

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	57 - 104	1.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	132 - 218	9e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18960 AT4G18960 AT4G18960 AT4G18960
fragaria_vesca	FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720 FvH4_3g06720
malus_domestica	MD05G1293700.v1.1 MD10G1271000.v1.1
prunus_persica	Prupe.3G111300_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1 Prupe.4G070500_v2.0.a1
pyrus_communis	pycom05g27100 pycom10g22680
rosa_chinensis	RchiOBHm_Chr5g0012431
rosa_laevigata	RLG00000031913
rosa_multiflora	Rmu_sc0003469.1_g000006 Rmu_sc0003469.1_g000007
rosa_roxburghii	Rroxscaffold_1G00064240
rosa_rugosa	Rorug05G0000900 Rorug05G0001000 Rorug05G0001100 Rorug05G0001200 Rorug05G0001300 Rorug05G0001300 Rorug05G0001400
rosa_samantha	Rh5AG095600 Rh5BG091800 Rh5CG104600 Rh5DG091200
rosa_wichuraiana	Rw5G008360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	686
AccB1I	GGYRCC	1 cut(s)	669
AccII	CGCG	1 cut(s)	802
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	3 cut(s)	179, 388, 552
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	407, 596, 797
AgsI	TTSAA	4 cut(s)	341, 372, 764, 824
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	9 cut(s)	80, 244, 395, 422, 511, 574, 637, 656, 711
AluI	AGCT	9 cut(s)	80, 244, 395, 422, 511, 574, 637, 656, 711
Alw21I	GWGCWC	4 cut(s)	246, 255, 513, 576
Alw26I	GTCTC	3 cut(s)	9, 391, 518
AlwI	GGATC	3 cut(s)	179, 388, 552
AoxI	GGCC	3 cut(s)	90, 234, 295
ApeKI	GCWGC	3 cut(s)	80, 422, 724
AspLEI	GCGC	2 cut(s)	216, 804
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	3 cut(s)	246, 513, 576
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	4 cut(s)	246, 255, 513, 576
BbvCI	CCTCAGC	2 cut(s)	264, 480
BbvI	GCAGC	3 cut(s)	67, 409, 736
BccI	CCATC	2 cut(s)	32, 798
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	9, 391, 518
BfuAI	ACCTGC	1 cut(s)	686
BisI	GCNGC	3 cut(s)	81, 423, 725
BlsI	GCNGC	3 cut(s)	82, 424, 726
BmcAI	AGTACT	2 cut(s)	407, 797
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	118, 250
BpiI	GAAGAC	1 cut(s)	274
Bpu10I	CCTNAGC	2 cut(s)	264, 480
BpuEI	CTTGAG	3 cut(s)	212, 497, 554
BsaBI	GATNNNNATC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	5 cut(s)	255, 416, 471, 648, 746
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	3 cut(s)	67, 409, 736
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	802
BshFI	GGCC	3 cut(s)	92, 236, 297
BshNI	GGYRCC	1 cut(s)	669
BsiHKAI	GWGCWC	4 cut(s)	246, 255, 513, 576
BsmAI	GTCTC	3 cut(s)	9, 391, 518
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	3 cut(s)	92, 236, 297
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	5 cut(s)	246, 255, 439, 513, 576
Bsp143I	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	3 cut(s)	92, 236, 297
BspCNI	CTCAG	5 cut(s)	256, 415, 472, 649, 745
BspFNI	CGCG	1 cut(s)	802
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	1 cut(s)	671
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	3 cut(s)	179, 388, 552
BspT107I	GGYRCC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	4 cut(s)	115, 293, 323, 461
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	435, 751
BstDEI	CTNAG	6 cut(s)	62, 264, 402, 480, 657, 732
BstDSI	CCRYGG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	802
BstHHI	GCGC	2 cut(s)	216, 804
BstKTI	GATC	6 cut(s)	159, 165, 174, 383, 560, 720
BstMAI	GTCTC	3 cut(s)	9, 391, 518
BstMBI	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 213, 250, 269, 653, 733
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	360, 601
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	3 cut(s)	67, 409, 736
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	2 cut(s)	380, 557
BstYI	RGATCY	2 cut(s)	380, 557
BsuRI	GGCC	3 cut(s)	92, 236, 297
BtgI	CCRYGG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	2 cut(s)	435, 751
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	2 cut(s)	216, 804
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	406, 595, 796
CviAII	CATG	6 cut(s)	357, 598, 704, 721, 743, 806
CviQI	GTAC	3 cut(s)	406, 595, 796
DdeI	CTNAG	6 cut(s)	62, 264, 402, 480, 657, 732
DpnI	GATC	6 cut(s)	158, 164, 173, 382, 559, 719
DpnII	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	3 cut(s)	244, 511, 574
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	3 cut(s)	246, 513, 576
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	3 cut(s)	244, 511, 574
Eco57I	CTGAAG	1 cut(s)	411
EcoICRI	GAGCTC	3 cut(s)	244, 511, 574
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	3 cut(s)	246, 513, 576
FaeI	CATG	6 cut(s)	360, 601, 707, 724, 746, 809
FatI	CATG	6 cut(s)	356, 597, 703, 720, 742, 805
Fnu4HI	GCNGC	3 cut(s)	81, 423, 725
FriOI	GRGCYC	3 cut(s)	246, 513, 576
Fsp4HI	GCNGC	3 cut(s)	81, 423, 725
GlaI	GCGC	2 cut(s)	215, 803
GluI	GCNGC	3 cut(s)	81, 423, 725
HaeIII	GGCC	3 cut(s)	92, 236, 297
HhaI	GCGC	2 cut(s)	216, 804
Hin1II	CATG	6 cut(s)	360, 601, 707, 724, 746, 809
Hin6I	GCGC	2 cut(s)	214, 802
HinP1I	GCGC	2 cut(s)	214, 802
HinfI	GANTC	4 cut(s)	122, 300, 365, 730
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	127, 391, 644
Hpy188III	TCNNGA	3 cut(s)	160, 229, 743
HpyAV	CCTTC	5 cut(s)	141, 211, 226, 346, 830
HpyCH4III	ACNGT	4 cut(s)	115, 293, 323, 461
HpyCH4V	TGCA	9 cut(s)	83, 207, 362, 454, 601, 622, 695, 724, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 213, 250, 269, 653, 733
HpyF3I	CTNAG	6 cut(s)	62, 264, 402, 480, 657, 732
Hsp92II	CATG	6 cut(s)	360, 601, 707, 724, 746, 809
HspAI	GCGC	2 cut(s)	214, 802
Kzo9I	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
LmnI	GCTCC	2 cut(s)	508, 642
LpnPI	CCDG	7 cut(s)	104, 131, 452, 647, 681, 686, 824
Lsp1109I	GCAGC	3 cut(s)	67, 409, 736
LweI	GCATC	2 cut(s)	118, 250
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	6 cut(s)	158, 164, 173, 382, 559, 719
MboI	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
MboII	GAAGA	4 cut(s)	150, 274, 360, 577
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	380, 557
MhlI	GDGCHC	5 cut(s)	246, 255, 439, 513, 576
MluCI	AATT	5 cut(s)	336, 543, 552, 588, 824
MlyI	GAGTC	3 cut(s)	116, 294, 724
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	7 cut(s)	21, 24, 259, 475, 650, 660, 739
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	6 cut(s)	89, 213, 250, 269, 653, 733
NdeII	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
NlaIII	CATG	6 cut(s)	360, 601, 707, 724, 746, 809
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	2 cut(s)	360, 601
PagI	TCATGA	1 cut(s)	742
PaqCI	CACCTGC	1 cut(s)	686
PceI	AGGCCT	1 cut(s)	236
PctI	GAATGC	1 cut(s)	775
PfeI	GAWTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	82, 424, 726
PleI	GAGTC	3 cut(s)	116, 294, 724
PpsI	GAGTC	3 cut(s)	116, 294, 724
Psp124BI	GAGCTC	3 cut(s)	246, 513, 576
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	380, 557
RsaI	GTAC	3 cut(s)	407, 596, 797
RsaNI	GTAC	3 cut(s)	406, 595, 796
SacI	GAGCTC	3 cut(s)	246, 513, 576
SatI	GCNGC	3 cut(s)	81, 423, 725
Sau3AI	GATC	6 cut(s)	156, 162, 171, 380, 557, 717
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	2 cut(s)	407, 797
SchI	GAGTC	3 cut(s)	116, 294, 724
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	5 cut(s)	246, 255, 439, 513, 576
SfaNI	GCATC	2 cut(s)	118, 250
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	3 cut(s)	227, 512, 533
SmoI	CTYRAG	3 cut(s)	227, 512, 533
Sse9I	AATT	5 cut(s)	336, 543, 552, 588, 824
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	169
SstI	GAGCTC	3 cut(s)	246, 513, 576
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	4 cut(s)	115, 293, 323, 461
TaqI	TCGA	2 cut(s)	159, 174
TasI	AATT	5 cut(s)	336, 543, 552, 588, 824
TatI	WGTACW	3 cut(s)	405, 594, 795
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	80, 422, 724
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	111, 731
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	115
XceI	RCATGY	2 cut(s)	360, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
ZrmI	AGTACT	2 cut(s)	407, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.